View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8412_high_10 (Length: 447)

Name: NF8412_high_10
Description: NF8412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8412_high_10
NF8412_high_10
[»] chr8 (3 HSPs)
chr8 (155-433)||(24378405-24378683)
chr8 (13-80)||(24377787-24377854)
chr8 (1-79)||(24378836-24378914)
[»] chr2 (4 HSPs)
chr2 (155-433)||(20102186-20102466)
chr2 (13-78)||(20102985-20103050)
chr2 (20-82)||(23183800-23183862)
chr2 (20-82)||(23595057-23595119)
[»] chr5 (1 HSPs)
chr5 (198-296)||(29760552-29760650)


Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 155 - 433
Target Start/End: Complemental strand, 24378683 - 24378405
Alignment:
Q  155 aactagcatacaagttcaaccaagccatgtctcattcctattgtgagagttagcgtaatgggtgttttcccttttctattagcatcaaaacccacttcca 254  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| || |||||||||||||||||||| |    
T  24378683 aactagcatacaagttcaaccaagccatgtctcattcctattctgagagttagcgtaatgtgtgttttccctttccttttagcatcaaaacccacttcga 24378584  T
Q  255 gtttctcaatcttttcattttcaacaaccccagtttcttcttgtccttcttcgagtttttcaacacaacaaatcaatttaaaatcaaaaaacacaaaagt 354  Q
    ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||| ||||||||||||||| ||||| ||||||||||||||    
T  24378583 gtttctcaatcttttcattttcaacaacctcattttcttcttgttcttcttcgagtgtttcaatacaacaaatcaatttgaaatcgaaaaacacaaaagt 24378484  T
Q  355 tgtctcatgttaatctaggttttgaaaagggnnnnnnnntcaatcttgattgatgatggaagctgaaatagagaacaat 433  Q
    ||||||||||||||||||| |||||||||||        ||||||||||||||||||||||||||||| ||||||||||    
T  24378483 tgtctcatgttaatctagggtttgaaaagggaaaaaaattcaatcttgattgatgatggaagctgaaacagagaacaat 24378405  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 24377787 - 24377854
Alignment:
Q  13 aagcctcttgcaatgacatttttgcccttgctgaagcaggactcgcatgtaaagaccattttacccct 80  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  24377787 aagcctcttgcaatgacatttttgcccttactgaagcaggactcgcacgtaaagaccattttacccct 24377854  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 24378914 - 24378836
Alignment:
Q  1 acacgtaagtctaagcctcttgcaatgacatttttgcccttgctgaagcaggactcgcatgtaaagaccattttacccc 79  Q
    |||||||||  |||||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||    
T  24378914 acacgtaagcataagcctcttgcaatgacatttttgcccttactgaagcaggactcgtgcgtaaagaccattttacccc 24378836  T

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Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 155 - 433
Target Start/End: Original strand, 20102186 - 20102466
Alignment:
Q  155 aactagcatacaagttcaaccaagccatgtctcattcctattgtgagagttagcgtaatgggtgttttcccttttctattagcatcaaaacccacttcca 254  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  20102186 aactagcatacaagttcaaccaagccatgtctcattcctattctgagagttagcgtaatgggtgttttccctttccttttagcatcaaaacccacttcca 20102285  T
Q  255 gtttctcaatcttttcattttcaacaaccccagt---ttcttcttgtccttcttcgagtttttcaacacaacaaatcaatttaaaatcaaaaaacacaaa 351  Q
    |||||||||||||||||||||||||||||||| |   |||||||| | ||||||||||| |||||| ||||||||||||||||||||| |||||||||||    
T  20102286 gtttctcaatcttttcattttcaacaaccccattttcttcttcttcttcttcttcgagtgtttcaatacaacaaatcaatttaaaatcgaaaaacacaaa 20102385  T
Q  352 agttgtctcatgttaatctaggttttgaaaagggnnnnnnnntcaatcttgattgatgatggaagctgaaatagagaacaat 433  Q
    |||||||||||||||||||||| |||||||||||        ||||| ||||||||||||||||||||||| ||||||||||    
T  20102386 agttgtctcatgttaatctagggtttgaaaaggg-aaaaaattcaatattgattgatgatggaagctgaaacagagaacaat 20102466  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 20103050 - 20102985
Alignment:
Q  13 aagcctcttgcaatgacatttttgcccttgctgaagcaggactcgcatgtaaagaccattttaccc 78  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||    
T  20103050 aagcctcttgcaatgacatttttgcacttactgaagcaggactcgcacgtaaagaccattttaccc 20102985  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 23183800 - 23183862
Alignment:
Q  20 ttgcaatgacatttttgcccttgctgaagcaggactcgcatgtaaagaccattttacccctag 82  Q
    ||||||||| ||||||||||||  |||| ||||||||||| |||||||| | |||||||||||    
T  23183800 ttgcaatgatatttttgcccttaatgaatcaggactcgcacgtaaagacaaatttacccctag 23183862  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 23595057 - 23595119
Alignment:
Q  20 ttgcaatgacatttttgcccttgctgaagcaggactcgcatgtaaagaccattttacccctag 82  Q
    ||||||||| ||||||||||||  |||| ||||||||||| |||||||| | |||||||||||    
T  23595057 ttgcaatgatatttttgcccttaatgaatcaggactcgcacgtaaagacaaatttacccctag 23595119  T

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Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 198 - 296
Target Start/End: Complemental strand, 29760650 - 29760552
Alignment:
Q  198 tgagagttagcgtaatgggtgttttcccttttctattagcatcaaaacccacttccagtttctcaatcttttcattttcaacaaccccagtttcttctt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29760650 tgagagttagcgtaatgggtgttttcccttttctattagcatcaaaacccacttccagtttctcaatcttttcattttcaacaaccccattttcttctt 29760552  T

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