View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8412_high_2 (Length: 751)

Name: NF8412_high_2
Description: NF8412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8412_high_2
NF8412_high_2
[»] chr4 (1 HSPs)
chr4 (12-718)||(46754739-46755445)


Alignment Details
Target: chr4 (Bit Score: 663; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 12 - 718
Target Start/End: Complemental strand, 46755445 - 46754739
Alignment:
Q  12 gtagcagagacatggactagttaaatgagtttcgttcacaatctcaaaagttagcttgtgagataaagtatccaaattcaatagtctattcttacgtctt 111  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46755445 gtagcatagacatggactagttaaatgagtttcgttcacaatctcaaaagttagcttgtgagataaagtatccaaattcaatagtctattcttacgtctt 46755346  T
Q  112 gtgtgatttttgagtcaaattcttacattgtcatctttaatttagctttaatacaatgttaaatagactttaatttcattttcgaaagatagttcaaaag 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  46755345 gtgtgatttttgagtcaaattcttacattgtcatctttaatttagctttaatacaatgttaaatagactttaattttattttcaaaagatagttcaaaag 46755246  T
Q  212 attaggtggccacatattgtaaacacacacgcatccgagctcaaaaatcttagcaacgtgaaacatagttattagagttggttgaaattgaaatttatac 311  Q
    ||||||||||||||||| ||| ||||||||||||||||||| ||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  46755245 attaggtggccacatatagtacacacacacgcatccgagctaaaaaattatagcaacgtgacacatagttattagagttggttgaaattgaaatttatac 46755146  T
Q  312 accttttacgtatacacccttcaaatataatcatagttcaaaagaattagtaaactccatacttcactttcaactaaaccactctaaaaatttacatatg 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46755145 accttttacgtatacacccttcaaatataatcatagttcaaaagaattagtaaactccatacttcactttcaactaaaccactctaaaaatttacatatg 46755046  T
Q  412 ccaaaagaaattagtctcacatcaatttgttgttgtacttggtgctctcccaaactcctcaacggttacaatttcaataccaactttcatttccgtttag 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46755045 ccaaaagaaattagtctcacatcaatttgttgttgtacttggtgctctcccaaactcctcaacggttacaatttcaataccaactttcatttccgtttag 46754946  T
Q  512 agaataaatgcattgtttttactattttgataaggttatatatgtgtagttatcaacctaaaatatttgtcctaaccgtcaacctcatacagctatgccg 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46754945 agaataaatgcattgtttttactattttgataaggttatatatgtatagttatcaacctaaaatatttgtcctaaccgtcaacctcatacagctatgccg 46754846  T
Q  612 ggaaagattatcgatgttgtgtacacgaaaataaactgagaaaaaagaatggaaaattattgtagacaaccattggttacacaatcaaggggccaaaaaa 711  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  46754845 ggaaagattatcgatgttgtgtacacgaaaataaactgagaaaaaagaatggaaaattgttgtagacaaccattggttacacaatcaaggggccaaaaaa 46754746  T
Q  712 tgcattg 718  Q
    |||||||    
T  46754745 tgcattg 46754739  T

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