View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8412_high_24 (Length: 258)

Name: NF8412_high_24
Description: NF8412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8412_high_24
NF8412_high_24
[»] chr6 (12 HSPs)
chr6 (1-240)||(2187075-2187314)
chr6 (19-240)||(2172105-2172332)
chr6 (70-180)||(28327820-28327930)
chr6 (70-180)||(28505456-28505566)
chr6 (139-217)||(29470467-29470545)
chr6 (91-147)||(28141894-28141950)
chr6 (118-147)||(27590835-27590864)
chr6 (118-147)||(27696443-27696472)
chr6 (124-164)||(26658241-26658281)
chr6 (124-164)||(26764212-26764252)
chr6 (118-146)||(27675432-27675460)
chr6 (118-146)||(27716352-27716380)
[»] scaffold0286 (1 HSPs)
scaffold0286 (19-240)||(21711-21938)
[»] chr1 (1 HSPs)
chr1 (116-146)||(28125543-28125573)
[»] scaffold0349 (1 HSPs)
scaffold0349 (118-146)||(15565-15593)


Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2187314 - 2187075
Alignment:
Q  1 ttgagattattacaatgtgaaagttcaagttttagaagagatgtcaactttatgggtggaaaactactcagcttgctgcagccagtaacgttcaagattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2187314 ttgagattattacaatgtgaaagttcaagttttagaagagatgtcaactttatgggtggaaaactactcagcttgctgcagccagtaacgttcaagattt 2187215  T
Q  101 tgagtttattcaaaaacccaatcgaattgtgaattgtaattaaattcgaacaatctcgaaatgatagtatttccaaatttaagagaccagatatgtcaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2187214 tgagtttattcaaaaacccaatcgaattgtgaattgtaattaaattcgaacaatctcgaaatgacagtatttccaaatttaagagaccagatatgtcaag 2187115  T
Q  201 tatctgtgttaaagattgattgtggtctaaatttaactct 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2187114 tatctgtgttaaagattgattgtggtctaaatttaactct 2187075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 2172105 - 2172332
Alignment:
Q  19 gaaagttcaagttttagaagagatgtcaactttatgggtggaaaactactcagcttgctgcagccagtaacgttcaagattttgagtttattcaaaaacc 118  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||  | |||||| |||| ||| |||||||||||||||||||||||||||| ||||    
T  2172105 gaaagttcaagttttggaagagatgtcaaatttatgggtggaaaacttgtaagcttgatgcaaccaataacgttcaagattttgagtttattcaagaacc 2172204  T
Q  119 caatcgaattgtgaattgtaattaaattcgaacaatctcgaaatgatagtatttccaaatttaagag------accagatatgtcaagtatctgtgttaa 212  Q
         |||| ||||| ||||||||||||| ||||||||||||  || ||||||||||||||||||||      ||||||| |||||| ||||||||||||    
T  2172205 tttcagaatcgtgaaatgtaattaaattccaacaatctcgaatcgaaagtatttccaaatttaagagaacagaaccagatttgtcaactatctgtgttaa 2172304  T
Q  213 agattgattgtggtctaaatttaactct 240  Q
    ||||||| ||| ||||||||||||||||    
T  2172305 agattgactgtagtctaaatttaactct 2172332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 28327930 - 28327820
Alignment:
Q  70 agcttgctgcagccagtaacgttcaagattttgagtttattcaaaaacccaatcgaattgtgaattgtaattaaattcgaacaatctcgaaatgatagta 169  Q
    ||||||||||| |||||| ||||||||||||  |||||||| |  ||||||| |||  ||||||||  ||||||||||  |||| || ||||||| | ||    
T  28327930 agcttgctgcaaccagtagcgttcaagatttcaagtttatttaggaacccaaacgatctgtgaatttcaattaaattcttacaaccttgaaatgaaaata 28327831  T
Q  170 tttccaaattt 180  Q
    |||| ||||||    
T  28327830 tttctaaattt 28327820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 28505566 - 28505456
Alignment:
Q  70 agcttgctgcagccagtaacgttcaagattttgagtttattcaaaaacccaatcgaattgtgaattgtaattaaattcgaacaatctcgaaatgatagta 169  Q
    ||||||||||| |||||| ||||||||||||  |||||||| |  ||||||| |||  ||||||||  ||||||||||  |||| || ||||||| | ||    
T  28505566 agcttgctgcaaccagtagcgttcaagatttcaagtttatttaggaacccaaacgatctgtgaatttcaattaaattcttacaaccttgaaatgaaaata 28505467  T
Q  170 tttccaaattt 180  Q
    |||| ||||||    
T  28505466 tttctaaattt 28505456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 29470545 - 29470467
Alignment:
Q  139 attaaattcgaacaatctcgaaatgatagtatttccaaatttaagagaccagatatgtcaagtatctgtgttaaagatt 217  Q
    |||||||||  ||||||| |||| || |||  ||| ||||||| |||||||||||||||| ||||| ||||||||||||    
T  29470545 attaaattcacacaatcttgaaaagaaagttcttctaaatttacgagaccagatatgtcaggtatccgtgttaaagatt 29470467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 28141950 - 28141894
Alignment:
Q  91 ttcaagattttgagtttattcaaaaacccaatcgaattgtgaattgtaattaaattc 147  Q
    |||||||||||||||||||| || |||||||  |||||||| | |||||||||||||    
T  28141950 ttcaagattttgagtttatttaataacccaacagaattgtgtactgtaattaaattc 28141894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 147
Target Start/End: Original strand, 27590835 - 27590864
Alignment:
Q  118 ccaatcgaattgtgaattgtaattaaattc 147  Q
    ||||||||||||||||||||||||||||||    
T  27590835 ccaatcgaattgtgaattgtaattaaattc 27590864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 147
Target Start/End: Original strand, 27696443 - 27696472
Alignment:
Q  118 ccaatcgaattgtgaattgtaattaaattc 147  Q
    ||||||||||||||||||||||||||||||    
T  27696443 ccaatcgaattgtgaattgtaattaaattc 27696472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 26658281 - 26658241
Alignment:
Q  124 gaattgtgaattgtaattaaattcgaacaatctcgaaatga 164  Q
    ||||||||||||||||||||||| | ||||| |||||||||    
T  26658281 gaattgtgaattgtaattaaattagcacaatttcgaaatga 26658241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 26764252 - 26764212
Alignment:
Q  124 gaattgtgaattgtaattaaattcgaacaatctcgaaatga 164  Q
    ||||||||||||||||||||||| | ||||| |||||||||    
T  26764252 gaattgtgaattgtaattaaattagcacaatttcgaaatga 26764212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 146
Target Start/End: Original strand, 27675432 - 27675460
Alignment:
Q  118 ccaatcgaattgtgaattgtaattaaatt 146  Q
    |||||||||||||||||||||||||||||    
T  27675432 ccaatcgaattgtgaattgtaattaaatt 27675460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 146
Target Start/End: Original strand, 27716352 - 27716380
Alignment:
Q  118 ccaatcgaattgtgaattgtaattaaatt 146  Q
    |||||||||||||||||||||||||||||    
T  27716352 ccaatcgaattgtgaattgtaattaaatt 27716380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 21938 - 21711
Alignment:
Q  19 gaaagttcaagttttagaagagatgtcaactttatgggtggaaaactactcagcttgctgcagccagtaacgttcaagattttgagtttattcaaaaacc 118  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||  | |||||| |||| ||| |||||||||||||||||||||||||||| ||||    
T  21938 gaaagttcaagttttggaagagatgtcaaatttatgggtggaaaacttgtaagcttgatgcaaccaataacgttcaagattttgagtttattcaagaacc 21839  T
Q  119 caatcgaattgtgaattgtaattaaattcgaacaatctcgaaatgatagtatttccaaatttaagag------accagatatgtcaagtatctgtgttaa 212  Q
         |||| ||||| ||||||||||||| ||||||||||||  || ||||||||||||||||||||      ||||||| |||||| ||||||||||||    
T  21838 tttcagaatcgtgaaatgtaattaaattccaacaatctcgaatcgaaagtatttccaaatttaagagaacagaaccagatttgtcaactatctgtgttaa 21739  T
Q  213 agattgattgtggtctaaatttaactct 240  Q
    ||||||| ||| ||||||||||||||||    
T  21738 agattgactgtagtctaaatttaactct 21711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 146
Target Start/End: Original strand, 28125543 - 28125573
Alignment:
Q  116 acccaatcgaattgtgaattgtaattaaatt 146  Q
    |||||||||||||||||||||||||||||||    
T  28125543 acccaatcgaattgtgaattgtaattaaatt 28125573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 146
Target Start/End: Complemental strand, 15593 - 15565
Alignment:
Q  118 ccaatcgaattgtgaattgtaattaaatt 146  Q
    |||||||||||||||||||||||||||||    
T  15593 ccaatcgaattgtgaattgtaattaaatt 15565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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