View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8412_high_28 (Length: 223)
Name: NF8412_high_28
Description: NF8412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8412_high_28 |
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| [»] scaffold0734 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 11211721 - 11211901
Alignment:
| Q |
17 |
tattgaaagcagcatcaccaatcattctttcagaatcttggaatgcaacacaagaaggtgttgttctcttccctaggtcgttcactattatatgtacctc |
116 |
Q |
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|||||||||||||||||||||| ||||||||| | | || ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
11211721 |
tattgaaagcagcatcaccaataattctttcatagtttttgaatgcaacacaagaaggtgttgttctgttcccttggtcgttcactattatatgtacctc |
11211820 |
T |
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| Q |
117 |
tccattcttcttacacactccaacacaagaataggttgttcctaggtcgattcctattgctactttcttacctattcctga |
197 |
Q |
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| T |
11211821 |
tccattcttcttacacactgcaacacaagaataggttgttcctaggtcgattcctattgcaactttcttacctattcctga |
11211901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 11174191 - 11174371
Alignment:
| Q |
16 |
atattgaaagcagcatcaccaatcattctttcagaatcttggaatgcaacacaagaaggtgttgttctcttccctaggtcgttcactattatatgtacct |
115 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
11174191 |
atattgaaagcagcatcaccaatcattctttcagagtctttgaatgcaacaaaagaaggtgttgttctcttccctaggtcgttcactattatatctatct |
11174290 |
T |
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| Q |
116 |
ctccattcttcttacacactccaacacaagaataggttgttcctaggtcgattcctattgctactttcttacctattcctgaca |
199 |
Q |
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| T |
11174291 |
ctcca---ttcttacacactgcaacacaagaataggttgttcctaggtcgattcctattgctactttcttacctcttcctgaca |
11174371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 11278601 - 11278780
Alignment:
| Q |
17 |
tattgaaagcagcatcaccaatcattctttcagaatcttggaatgcaacacaagaaggtgttgttctcttccctaggtcgttcactattatatgtacctc |
116 |
Q |
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|||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||| |||||| |||||||||||||||| | |||||| |
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| T |
11278601 |
tattgaaagcagcatcaccaatcattctttcagagtttttgaatgcaacacaagaaggtgttgttctgttcccttggtcgttcactattatctctacctc |
11278700 |
T |
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| Q |
117 |
tccattcttcttacacactccaacacaagaataggttgttcctaggtcgattcctattgctactttcttacctattcctgaca |
199 |
Q |
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||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11278701 |
tcc---tttcttacacactgcaacacaagaataggttgttcctaggtcgattcctattgcaactttcttacctattcctgaca |
11278780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 11159644 - 11159809
Alignment:
| Q |
16 |
atattgaaagcagcatcaccaatcattctttcagaatcttggaatgcaacacaagaaggtgttgttctcttccctaggtcgttcactattatatgtacct |
115 |
Q |
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|||||| |||||||||||||||||||||||| ||| || ||| |||||| |||||||||||||||| |||||| |||||||||||||||| | ||||| |
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| T |
11159644 |
atattggaagcagcatcaccaatcattctttgagagtcagtgaaggcaacataagaaggtgttgttctattcccttggtcgttcactattatctctacct |
11159743 |
T |
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| Q |
116 |
ctccattcttcttacacactccaacacaagaataggttgttcctaggtcgattcctattgctactttct |
184 |
Q |
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| T |
11159744 |
tatcattcttc---catacagcaacacaagaataggttgttcctaggtcgattcctattgcaactttct |
11159809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 11134310 - 11134484
Alignment:
| Q |
19 |
ttgaaagcagcatcaccaatcattctttcagaatcttggaatgcaacacaagaaggtgttgttctcttccctaggtcgttcactattatatgtacctctc |
118 |
Q |
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|||||||||| ||||||||||||||||| ||| || |||||||||| |||||||||||||||| |||||| ||||||||||||| || | ||| | |
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| T |
11134310 |
ttgaaagcaggatcaccaatcattctttgagagtcagtgaatgcaacataagaaggtgttgttctattcccttggtcgttcactatcatctcaacc---c |
11134406 |
T |
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| Q |
119 |
cattcttcttacacactccaacacaagaataggttgttcctaggtcgattcctattgctactttcttacctattcctg |
196 |
Q |
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|| ||| | |||||| || |||||||||| |||||||||| ||||||||||||||| ||||||| |||| |||||| |
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| T |
11134407 |
tatcattcctccacactgcagcacaagaataagttgttcctaagtcgattcctattgcaactttctcaccttttcctg |
11134484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 11198196 - 11198366
Alignment:
| Q |
16 |
atattgaaagcagcatcaccaatcattctttcagaatcttggaatgcaacacaagaaggtgttgttctcttccctaggtcgttcactattatatgta-cc |
114 |
Q |
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||||||||||||| ||||||||||||||||||||| || ||| |||||| |||||||||||||||| |||||| |||||||| ||| || | || || |
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| T |
11198196 |
atattgaaagcagaatcaccaatcattctttcagagtcagtgaaggcaacataagaaggtgttgttctattcccttggtcgttcggtatgatctctatcc |
11198295 |
T |
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| Q |
115 |
tctccattcttcttacacactccaacacaagaataggttgttcctaggtcgattcctattgctactttcttacct |
189 |
Q |
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| | ||| | || || || |||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
11198296 |
tat-catgcctc---catacagcaacacaagaataggttgttcctaggtcgattcctattgcaactttctcacct |
11198366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0734 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0734
Description:
Target: scaffold0734; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 4837 - 4888
Alignment:
| Q |
148 |
taggttgttcctaggtcgattcctattgctactttcttacctattcctgaca |
199 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
4837 |
taggttgttcctaggtcgattcctattgccacttttttacctattcctgaca |
4888 |
T |
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