View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8412_high_3 (Length: 705)
Name: NF8412_high_3
Description: NF8412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8412_high_3 |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 109 - 543
Target Start/End: Complemental strand, 13392426 - 13391999
Alignment:
| Q |
109 |
atagaaaaggaaagtgcttacctaataagcttttctacttcttcctgtcttatttgtaaagaaataaatnnnnnnnnncttatcaagagttaccaaataa |
208 |
Q |
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| T |
13392426 |
atagaaaaggaaagtgcttacctaataagcttttctacttcttcctgtcttatttgtaaagaaataaaaaaaaaaa---ttatcaagagttaccaaataa |
13392330 |
T |
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| Q |
209 |
taaactaatctaaaacactattttaagtaaacaagctacaattcaatttattttaaacctgtaaattgttctaaatgttggatcccacctaatattgttt |
308 |
Q |
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| T |
13392329 |
taaactaatctaaaacactattttaagtaaacaagctacaattcaatttattttaaacctgtaaattgttctaaatgttggatcccacctaatattgttt |
13392230 |
T |
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| Q |
309 |
tatccattagagttttcaaattgcatgtcattgtcctaacattttgtacggctcatttacaagccttccaatcacaaaatgcaatctgtgtcatgaacac |
408 |
Q |
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| T |
13392229 |
tatccattagagttttcaaattgcatgtcattgtcctaacattttgtacggctcatttacaagccttccaatcacaaaatgcaatctgtgtcatgaacac |
13392130 |
T |
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| Q |
409 |
tttgtttaaataccaaacaaataggatctggttatacactcactcactagtttcaatttgcactacttttttcccctaacaaatatgattatctaacaaa |
508 |
Q |
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| T |
13392129 |
tttgtttaaataccaaacaaataggatctggttatacact----cactagtttcaatttgcactacttttttcccctaacaaatatgattatctaacaaa |
13392034 |
T |
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| Q |
509 |
cttattaaaaagttagaatagtactactatgaaca |
543 |
Q |
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| T |
13392033 |
attattaaaaagttagaatagtactactatgaaca |
13391999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 544 - 697
Target Start/End: Complemental strand, 13391961 - 13391805
Alignment:
| Q |
544 |
tattttgagctagcaagagaggcttgtgttggaatttaacgtaaatttcttcaagaatattaacctacttagcttgttttggtggtgttgccttgagact |
643 |
Q |
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| T |
13391961 |
tatttagagctagcaagagaggcttgtgttggaatttaacgtaaattttttc---aaaattaacctacttaacttgttctggtaatgttatcttaagact |
13391865 |
T |
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| Q |
644 |
ttaaagtgtgttac------tttcgaagtctcaactttgattctttctgatgttcatttc |
697 |
Q |
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| T |
13391864 |
ttaaagtgcgttaccttcgatttcaaagtctcaactttgattcttttcgatgttgatttc |
13391805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 600 - 686
Target Start/End: Complemental strand, 29592 - 29506
Alignment:
| Q |
600 |
atattaacctacttagcttgttttggtggtgttgccttgagactttaaagtgtgttactttcgaagtctcaactttgattctttctg |
686 |
Q |
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| T |
29592 |
atattaatctacttaggttggtatggtggtgttcgcttgagactttggagtgtgtttctctcaaagtctcatgtttgattctctctg |
29506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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