View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8412_low_10 (Length: 504)
Name: NF8412_low_10
Description: NF8412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8412_low_10 |
 | |
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| [»] scaffold0608 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 11107199 - 11107678
Alignment:
| Q |
1 |
ttttgtaatatcggtcgccaaatccttaaactctccagctgcaccattagattgaatcaaatctacagagaaaatagtgtttgataataaattgatggta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11107199 |
ttttgtaatatcggtcgccaaatccttaaactctccagctgcaccattagattgaatcaaatctacagagaaaatagtgtttgataataaattgatggta |
11107298 |
T |
|
| Q |
101 |
gtcttgaacactattgttccaatgtctattgattcaccaatttggctgctttgatgaatatcactaagaagttgttgaattttcattcgcctaacatctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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|
| T |
11107299 |
gtcttgaacactattgttccaatgtctattgcttcaccaatttgactgctttgatgaatatcactaagaagttgtcgaattttcatgcgcctaacatctt |
11107398 |
T |
|
| Q |
201 |
gactagcatcaagactcttgtgagaaagtaattgagtgttgcatatttttctcaattccttccaaagaggtgaaatgggagtgaatgcaagactatattg |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
11107399 |
gactagcatcaagactcttatgagaaagtaattgagtgttgcatatttttctcaattccttccaaagaggtgaaatgggtgtgaatgcaagactatattg |
11107498 |
T |
|
| Q |
301 |
gtcatggttgagaactgacacagattgtggaacagtcctatttgacaagaatttgtcattggtgagaagcacttctttggccattgttgatgaagagata |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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|
| T |
11107499 |
gtcatggttgagaactgacacagattgtggaacagtcctatttgacaagaatttgtcattggtgagaagaacttgtttggccattgttgatgaagagata |
11107598 |
T |
|
| Q |
401 |
acaacagtggttatttgccctagcttgagactcattaaaggaccataaattttggcaagttttgctaatgatttgtgggg |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||| |
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|
| T |
11107599 |
acaacagtggttatttgccctagcttgagactcattaaaggaccatatattttggcaagtttagccaatgatttgtgggg |
11107678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 22 - 482
Target Start/End: Complemental strand, 46926838 - 46926378
Alignment:
| Q |
22 |
atccttaaactctccagctgcaccattagattgaatcaaatctacagagaaaatagtgtttgataataaattgatggtagtcttgaacactattgttcca |
121 |
Q |
| |
|
||||||||| ||||| ||||||||||| || ||||||||||| | ||||||||| |||||||||| |||||| ||||||||||||||||||||||||||| |
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|
| T |
46926838 |
atccttaaattctcctgctgcaccatttgagtgaatcaaatccatagagaaaatggtgtttgatagtaaatttatggtagtcttgaacactattgttcca |
46926739 |
T |
|
| Q |
122 |
atgtctattgattcaccaatttggctgctttgatgaatatcactaagaagttgttgaattttcattcgcctaacatcttgactagcatcaagactcttgt |
221 |
Q |
| |
|
||||| || | ||||||||||| ||||||||||| |||||| | ||||| ||||||||||| | |||||||| ||||| || |||||||||||||||| |
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|
| T |
46926738 |
atgtcaatagcttcaccaattttactgctttgatggatatcattgagaagctgttgaatttttttacgcctaacgtcttggctggcatcaagactcttgt |
46926639 |
T |
|
| Q |
222 |
gagaaagtaattgagtgttgcatatttttctcaattccttccaaagaggtgaaatgggagtgaatgcaagactatattggtcatggttgagaactgacac |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| || |||||||||||||||||||| |
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|
| T |
46926638 |
gagaaagtaattgagtgttgcatatttttctcaattccttccaaagtggtgaaatgggcatgaaagcaagactatactgctcatggttgagaactgacac |
46926539 |
T |
|
| Q |
322 |
agattgtggaacagtcctatttgacaagaatttgtcattggtgagaagcacttctttggccattgttgatgaagagataacaacagtggttatttgccct |
421 |
Q |
| |
|
|| ||| || | | || ||||||||||| ||||||||||| || || || ||||| |||||||||| ||| |||||||||| |||||||||||| || |
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|
| T |
46926538 |
agtttgaggtatgtttctctttgacaagaacttgtcattggttaggagaacctctttagccattgttgctgaggagataacaatagtggttatttggcca |
46926439 |
T |
|
| Q |
422 |
agcttgagactcattaaaggaccataaattttggcaagttttgctaatgatttgtggggtt |
482 |
Q |
| |
|
| |||||||||||||||||| |||| |||||| || || || || ||||| ||||| |||| |
|
|
| T |
46926438 |
aacttgagactcattaaagggccatgaattttcgctagcttggccaatgacttgtgaggtt |
46926378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 46933724 - 46933243
Alignment:
| Q |
1 |
ttttgtaatatcggtcgccaaatccttaaactctccagctgcaccattagattgaatcaaatctacagagaaaatagtgtttgataataaattgatggta |
100 |
Q |
| |
|
||||||||||| ||| |||| ||||| |||||||| ||| |||||||||| ||||||||||| ||||||||||| |||||||| || | ||| ||||| |
|
|
| T |
46933724 |
ttttgtaatattagtcaccaagtccttgaactctcctgcttcaccattagactgaatcaaatccacagagaaaattgtgtttgacaacagatttatggtg |
46933625 |
T |
|
| Q |
101 |
gtcttgaacactattgttccaatgtctattgattcaccaatttggctgctttgatgaatatcactaagaagttgttgaattttcattcgcctaacatctt |
200 |
Q |
| |
|
|||||||| ||| |||||| || ||||||| |||||| ||||| |||||||||| |||||| | ||||| ||||| |||||| | || |||||||||| |
|
|
| T |
46933624 |
gtcttgaaaactgctgttccgatatctattgcttcaccgatttgactgctttgattgatatcattgagaagctgttgcattttcttgcgtctaacatctt |
46933525 |
T |
|
| Q |
201 |
gactagcatcaagactcttgtgagaaagtaattgagtgttgcatatttttctcaattccttccaaagaggtgaaatgggagtgaatgcaagactatattg |
300 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || |||| ||||||||||| || |
|
|
| T |
46933524 |
gactagcatcaagagtcttgtgagaaaataattgagtgttgcatatttttctcaattccttccaaagaggtgcaactggtatgaaagcaagactataatg |
46933425 |
T |
|
| Q |
301 |
gtcatggttgagaactgacacagattgtggaacagtcctatttgacaagaatttgtcattggtgagaagcacttctttggccattgttgatgaagagata |
400 |
Q |
| |
|
|| ||||||||||| |||||||||||||||| || ||||| |||||||| | ||||||||| |||||||| || || ||||| | | ||| |||| |
|
|
| T |
46933424 |
ctcgtggttgagaaccgacacagattgtggaatggttctattagacaagaactggtcattggtcagaagcacctcctttgccatgttggctgaggagacg |
46933325 |
T |
|
| Q |
401 |
acaacagtggttatttgccctagcttgagactcattaaaggaccataaattttggcaagttttgctaatgatttgtggggtt |
482 |
Q |
| |
|
|| |||||||||||| | || | ||||||||| |||| || ||||| ||| || | ||| || ||||| |||||||| |||| |
|
|
| T |
46933324 |
acgacagtggttattcggccaaacttgagacttattatagaaccatgaatctttgtaagattggctaaggatttgtgaggtt |
46933243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 11112282 - 11112142
Alignment:
| Q |
1 |
ttttgtaatatcggtcgccaaatccttaaactctccagctgcaccattagattgaatcaaatctacagagaaaatagtgtttgataataaattgatggta |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11112282 |
ttttgtaatatccgtcgccaaatccttaaactctccagctgcaccattagattgaatcaaatctacagagaaaatagtgtttgataataaattgatggta |
11112183 |
T |
|
| Q |
101 |
gtcttgaacactattgttccaatgtctattgattcaccaat |
141 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
11112182 |
gtcttgaacactattgttccaatatctattgcttcaccaat |
11112142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 2638 - 3117
Alignment:
| Q |
1 |
ttttgtaatatcggtcgccaaatccttaaactctccagctgcaccattagattgaatcaaatctacagagaaaatagtgtttgataataaattgatggta |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2638 |
ttttgtaatatccgtcgccaaatccttaaactctccagctgcaccattagattgaatcaaatctacagagaaaatagtgtttgataataaattgatggta |
2737 |
T |
|
| Q |
101 |
gtcttgaacactattgttccaatgtctattgattcaccaatttggctgctttgatgaatatcactaagaagttgttgaattttcattcgcctaacatctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
2738 |
gtcttgaacactattgttccaatgtctattgcttcaccaatttgactgctttgatgaatatcactaagaagttgtcgaattttcatgcgcctaacatctt |
2837 |
T |
|
| Q |
201 |
gactagcatcaagactcttgtgagaaagtaattgagtgttgcatatttttctcaattccttccaaagaggtgaaatgggagtgaatgcaagactatattg |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2838 |
gactagcatcaagactcttatgagaaagtaattgagtgttgcatatttttctcaattccttccaaagaggtgaaatgggtgtgaatgcaagactatattg |
2937 |
T |
|
| Q |
301 |
gtcatggttgagaactgacacagattgtggaacagtcctatttgacaagaatttgtcattggtgagaagcacttctttggccattgttgatgaagagata |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
2938 |
gtcatggttgagaactgacacagattgtggaacagtcctatttgacaagaatttgtcattggtgagaagaacttgtttggccattgttgatgaagagata |
3037 |
T |
|
| Q |
401 |
acaacagtggttatttgccctagcttgagactcattaaaggaccataaattttggcaagttttgctaatgatttgtgggg |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
3038 |
acaacagtggttatttgccctagcttgagactcattaaaggaccatatattttggcaagtttagccaatgatttgtgggg |
3117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 5 - 141
Target Start/End: Complemental strand, 7714 - 7578
Alignment:
| Q |
5 |
gtaatatcggtcgccaaatccttaaactctccagctgcaccattagattgaatcaaatctacagagaaaatagtgtttgataataaattgatggtagtct |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7714 |
gtaatatcggtcgccaaatccttaaactctccagctgcaccattagattgaatcaaatctacagagaaaatagtgtttgataataaattgatggtagtct |
7615 |
T |
|
| Q |
105 |
tgaacactattgttccaatgtctattgattcaccaat |
141 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
7614 |
tgaacactattgttccaatatctattgcttcaccaat |
7578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 440 - 474
Target Start/End: Complemental strand, 1363417 - 1363383
Alignment:
| Q |
440 |
ggaccataaattttggcaagttttgctaatgattt |
474 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1363417 |
ggaccataaattttggcaagtttggctaatgattt |
1363383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 440 - 474
Target Start/End: Complemental strand, 1368935 - 1368901
Alignment:
| Q |
440 |
ggaccataaattttggcaagttttgctaatgattt |
474 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1368935 |
ggaccataaattttggcaagtttggctaatgattt |
1368901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 440 - 474
Target Start/End: Original strand, 1408007 - 1408041
Alignment:
| Q |
440 |
ggaccataaattttggcaagttttgctaatgattt |
474 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1408007 |
ggaccataaattttggcaagtttggctaatgattt |
1408041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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