View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8412_low_11 (Length: 490)
Name: NF8412_low_11
Description: NF8412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8412_low_11 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 15 - 472
Target Start/End: Complemental strand, 31347208 - 31346751
Alignment:
| Q |
15 |
catcaaatactaatgaatctctattgcctcaattattggattcttctccatacaatagtgaaaaccaaaccactctttctgatttctctcaaaacaaggt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31347208 |
catcaaatactaatgaatctctattgcctcaattattggattcttctccatacaatagtgaaaaccaaaccactctttctgatttctctcaaaacaaggt |
31347109 |
T |
|
| Q |
115 |
gaaaccaaaatcacaagatgacaacattgttcataacaatgaaactagtatcttgaacatttcatcctcttcaaagcaaatggatgtttatcctttagct |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31347108 |
gaaaccaaaatcacaagatgacaacattgttcataacaatgaaactagtatcttgaacatttcatcctcttcaaaacaaatggatgtttatcctttagct |
31347009 |
T |
|
| Q |
215 |
gaagtaatagctgccgatttgaaccaaactacaatggtcggaaattcatcaaactttttcttctctcaagaccaatcgatgttgaggatgcagttggaga |
314 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
31347008 |
gaagtaatagctgctgatttgaaccaaacctcaatggtcggaaattcgtcaaactttttcttctctcaagaccaatcgctgttgaggatgcagttggaga |
31346909 |
T |
|
| Q |
315 |
atgagaatattggaacaacctcaaaccaaagcataaaccaagagttttcttttgggagatattctgatgatgatatctcatctgtggtatatggaaatgg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31346908 |
atgagaatattggaacaacctcaaaccaaagcataaaccaagagttttcttttgggagatattctgatgatgatatctcatctgtggtatatggaaatgg |
31346809 |
T |
|
| Q |
415 |
catgtttcaaaggtggtttgggaatcaagaactgtcatcagcttctactggacatgtg |
472 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31346808 |
catgcttcaaaggtggtttgggaatcaagaactgtcatcagcttctactggacatgtg |
31346751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 15 - 472
Target Start/End: Complemental strand, 31357868 - 31357423
Alignment:
| Q |
15 |
catcaaatactaatgaatctctattgcctcaattattggattcttctccatacaatagtgaaaaccaaaccactctttctgatttctctcaaaacaaggt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31357868 |
catcaaatactaatgaatctctattgcctcaattattggattcttctccatacaatagtgaaaaccaaaccactctttctgatttctctcaaaacaaggt |
31357769 |
T |
|
| Q |
115 |
gaaaccaaaatcacaagatgacaacattgttcataacaatgaaactagtatcttgaacatttcatcctcttcaaagcaaatggatgtttatcctttagct |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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|
| T |
31357768 |
gaaaccaaaatcacaagatgacaacattgttcataacaatgaaactagtatcttgaacatttcatcctcttcaaaacaattggatgtttatcctttagct |
31357669 |
T |
|
| Q |
215 |
gaagtaatagctgccgatttgaaccaaactacaatggtcggaaattcatcaaactttttcttctctcaagaccaatcgatgttgaggatgcagttggaga |
314 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| |||| | ||||||||||||||||||||| |
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|
| T |
31357668 |
gaagtaatagctgctgatttgaaccaaacctcaatggtcgggaattcgtcaaactttttcttctctcaagaacaattgctgttgaggatgcagttggaga |
31357569 |
T |
|
| Q |
315 |
atgagaatattggaacaacctcaaaccaaagcataaaccaagagttttcttttgggagatattctgatgatgatatctcatctgtggtatatggaaatgg |
414 |
Q |
| |
|
||||||||||||||||||||||||| | | | ||||||||||||||| | ||||||| |||||||||||||||||||||||||||||| |
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|
| T |
31357568 |
atgagaatattggaacaacctcaaagaacatc------------ttttcttttgggagagactctgatgctgatatctcatctgtggtatatggaaatgg |
31357481 |
T |
|
| Q |
415 |
catgtttcaaaggtggtttgggaatcaagaactgtcatcagcttctactggacatgtg |
472 |
Q |
| |
|
||||||||||| || || | |||||||||| ||||| |||||||||||||||||||| |
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|
| T |
31357480 |
catgtttcaaaagttgtcagagaatcaagaattgtcaccagcttctactggacatgtg |
31357423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 115 - 275
Target Start/End: Original strand, 2920267 - 2920430
Alignment:
| Q |
115 |
gaaaccaaaatcacaagatgacaacattgttcataacaatgaaactagtatcttgaacatttcatcctcttcaaagcaaatggatgtttat---ccttta |
211 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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|
| T |
2920267 |
gaaatcaaaaacacaagatgacaacattgttcataacaatgaaacttgtatcttgaacatttcatcctcttcaaaacaaatggatgtttataaccctttc |
2920366 |
T |
|
| Q |
212 |
gctgaagtaatagctgccgatttgaaccaaactacaatggtcggaaattcatcaaactttttct |
275 |
Q |
| |
|
||||||| || || ||| |||| |||||||| |||||||||| ||||||||||||||||||| |
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|
| T |
2920367 |
gctgaaggaacagttgctgattccaaccaaacctcaatggtcgggaattcatcaaactttttct |
2920430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 115 - 285
Target Start/End: Original strand, 2925652 - 2925822
Alignment:
| Q |
115 |
gaaaccaaaatcacaagatgacaacattgttcataacaatgaaactagtatcttgaacatttcatcctcttcaaagcaaatggatgtttatcctttagct |
214 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| ||||||||| |
|
|
| T |
2925652 |
gaaaccaaaaacacaatatgacaacattgttcataacaatgaaacaagtatcttgaacatttcatcgtcttcaaaacaaatggatgtttaccctttagct |
2925751 |
T |
|
| Q |
215 |
gaagtaatagctgccgatttgaaccaaactacaatggtcggaaattcatcaaactttttcttctctcaaga |
285 |
Q |
| |
|
| || || || || ||| |||| ||| |||||| ||| ||||| ||||||||||||||||| ||||| |
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|
| T |
2925752 |
ggagcaacagtggctgatcccaacctaacctcaatggccgggaattcttcaaactttttcttctcccaaga |
2925822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 380 - 467
Target Start/End: Original strand, 2920466 - 2920553
Alignment:
| Q |
380 |
gatgatgatatctcatctgtggtatatggaaatggcatgtttcaaaggtggtttgggaatcaagaactgtcatcagcttctactggac |
467 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| ||||| ||||||||||||||| |
|
|
| T |
2920466 |
gatgctgatatctcatctgtggtatatggaaatgacatgtttcaaaggtggtctgggtatcaagatttgtcaccagcttctactggac |
2920553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 380 - 467
Target Start/End: Original strand, 2925851 - 2925938
Alignment:
| Q |
380 |
gatgatgatatctcatctgtggtatatggaaatggcatgtttcaaaggtggtttgggaatcaagaactgtcatcagcttctactggac |
467 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| ||||| ||||||||||||||| |
|
|
| T |
2925851 |
gatgctgatatctcatctgtggtatatggaaatgacatgtttcaaaggtggtctgggtatcaagatttgtcaccagcttctactggac |
2925938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 115 - 268
Target Start/End: Original strand, 29272304 - 29272460
Alignment:
| Q |
115 |
gaaaccaaaatcacaagatgacaacattgttcataacaatgaaactagtatcttgaacatttcatcctcttcaaagcaaatggatgtttat---ccttta |
211 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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|
| T |
29272304 |
gaaaccaaaaacacaagatgacaacattgttcacaacaatgaaactagtatcttgaacatttcatcctcttcaaaacaaatggatgtttataacccttta |
29272403 |
T |
|
| Q |
212 |
gctgaagtaatagctgccgatttgaaccaaactacaatggtcggaaattcatcaaac |
268 |
Q |
| |
|
||||||| || | ||| |||| |||||||| |||||||||| |||||||||||| |
|
|
| T |
29272404 |
gctgaagcaacaattgctgattccaaccaaacctcaatggtcgggaattcatcaaac |
29272460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 115 - 274
Target Start/End: Original strand, 9447671 - 9447837
Alignment:
| Q |
115 |
gaaaccaaaatcacaagatgacaacattgttcataacaatgaaactag----tatcttgaacatttcatcctcttcaaagcaaatggatgtttat---cc |
207 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
9447671 |
gaaaccaaaaacacaagacgacaacattgttcataacaatgaaactagtatatatcttgaacatttcatcctcttcaaaacaaatggatgtttataaccc |
9447770 |
T |
|
| Q |
208 |
tttagctgaagtaatagctgccgatttgaaccaaactacaatggtcggaaattcatcaaactttttc |
274 |
Q |
| |
|
||||||||||| || | ||| ||| |||||||| |||| ||||| |||||||||||||||||| |
|
|
| T |
9447771 |
tttagctgaagcaacaattgcttattccaaccaaacctcaattgtcgggaattcatcaaactttttc |
9447837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 9447562 - 9447611
Alignment:
| Q |
15 |
catcaaatactaatgaatctctattgcctcaattattggattcttctcca |
64 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||| ||||||| ||||||| |
|
|
| T |
9447562 |
catcaaatactaatgcatctctattgcctccattgttggattattctcca |
9447611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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