View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8412_low_14 (Length: 444)
Name: NF8412_low_14
Description: NF8412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8412_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 67 - 431
Target Start/End: Complemental strand, 52770083 - 52769725
Alignment:
| Q |
67 |
aattaattaattaatgttgttactgttgtagttgttatgaaagaaattagtatttttgaattaatattaatatagaatagaagaaatagtattaaattat |
166 |
Q |
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| T |
52770083 |
aattaattaattaatgttgttgctgttgtagttgttatgaaagaaattagtatttttgaattaatattaatatagaatagaagaaagagtattaaattat |
52769984 |
T |
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| Q |
167 |
ttagatgatcctcctcctactcctattgataaatgaaaaaagaaatggaatgtctggagctgagtcagctgacagtgatgcggataacgataagaagaag |
266 |
Q |
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| T |
52769983 |
ttagatgatcctcctcct---cctattgataaatgaaaaaagaaatgaaatgtctggagctgagtcagctgacagtgatgcggataacgataagaag--- |
52769890 |
T |
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| Q |
267 |
cacgttgtcttgtattgtaatattgtattggctatctattgggacttaactcaactaatcatccaatccattaatctttgttacgatgagatgacgataa |
366 |
Q |
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| T |
52769889 |
catgttgtcttgtattgtaatattgtattggctatctattgggacttaactcaactaatcatccaatccattaatctttgttacgatgagatgacggtaa |
52769790 |
T |
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| Q |
367 |
caacatcaattcgaattccaggaagctctgggtatttggatacacaccctgaaaggaaagtctct |
431 |
Q |
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| T |
52769789 |
caacatcaattcgaattccaggaagctctgggtatttggatatacaccctgaaagaaaagtctct |
52769725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 52770170 - 52770117
Alignment:
| Q |
17 |
aacaccagaattagaaaaatgagaagaaaagcaaccttcacattccttcaaatt |
70 |
Q |
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| T |
52770170 |
aacaccagaattagaaaaatgagaagaaaagcaacattcacattccttcaaatt |
52770117 |
T |
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