View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8412_low_16 (Length: 375)
Name: NF8412_low_16
Description: NF8412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8412_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 13615354 - 13615709
Alignment:
| Q |
1 |
ggtgtggcttgttgcttaacatttgtagcacatgatgatccaaatagtttaggtgaaggaataaagcgtcttagttggttcggtctcggttttcaagatg |
100 |
Q |
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| T |
13615354 |
ggtgtggcttgttgcttaacatttgtagcacatgatgatccaaatagtttaggtgaaggaataaagcgtcttagttggttcggtctcggttttcaagatg |
13615453 |
T |
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| Q |
101 |
aaccagcaggaatgagctctttcaactatattcccgtacatcttgaaaaagatctgattacagttgatttagatcacctgttgttacgttttatcagtaa |
200 |
Q |
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| T |
13615454 |
aaccagcaggaatgagctctttcaactatattcccgtacatgttgaaaaagatctgattacagttgatttagatcacctgttgctacgttttatcagtaa |
13615553 |
T |
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| Q |
201 |
ggaacactttaagtctgaaacattggattttgatattagcagtggtcttgaattggcagctgaagttgggaaagtccccggtttgcgtgttaaggtaaag |
300 |
Q |
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| T |
13615554 |
ggaacactttaagtctgaaacattggattttgatattagcagtggtcttgaattggcagctgaagttgggaaagtccccggtttgcgtgttaaggtaaag |
13615653 |
T |
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| Q |
301 |
aattgtggttatcgttggatatttgaggaggatttggagcaattaaaaccccgcaa |
356 |
Q |
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| T |
13615654 |
agttgtggttatcgttggatatttgaggaggatttggagcaattaaacccccgcaa |
13615709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 245 - 347
Target Start/End: Original strand, 31304762 - 31304864
Alignment:
| Q |
245 |
gtcttgaattggcagctgaagttgggaaagtccccggtttgcgtgttaaggtaaagaattgtggttatcgttggatatttgaggaggatttggagcaatt |
344 |
Q |
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| T |
31304762 |
gtcttgaattggcagctgatgtttggcaagtccccggtttgcattttgaggtaaagaactgtggttacagatggatatttgaggaggatctggagcaatt |
31304861 |
T |
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| Q |
345 |
aaa |
347 |
Q |
| |
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||| |
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| T |
31304862 |
aaa |
31304864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 31304676 - 31304726
Alignment:
| Q |
15 |
cttaacatttgtagcacatgatgatccaaatagtttaggtgaaggaataaa |
65 |
Q |
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| T |
31304676 |
cttaacatttgtagcacatgatgatccaaatagtttaggtgaaggaataaa |
31304726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 31213496 - 31213542
Alignment:
| Q |
301 |
aattgtggttatcgttggatatttgaggaggatttggagcaattaaa |
347 |
Q |
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||||| |||||||| ||||||||| |||||||||||||||||||||| |
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| T |
31213496 |
aattgaggttatcgatggatatttaaggaggatttggagcaattaaa |
31213542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 31247733 - 31247787
Alignment:
| Q |
129 |
tattcccgtacatcttgaaaaagatctgattacagttgatttagatcacctgttg |
183 |
Q |
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||||||| ||||||||| |||||||||| | |||||||||||||||||| ||||| |
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| T |
31247733 |
tattcccatacatcttggaaaagatctggtcacagttgatttagatcacttgttg |
31247787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 31213206 - 31213248
Alignment:
| Q |
15 |
cttaacatttgtagcacatgatgatccaaatagtttaggtgaa |
57 |
Q |
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|||||| |||||||||||||||||||||| || |||||||||| |
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| T |
31213206 |
cttaacttttgtagcacatgatgatccaactaatttaggtgaa |
31213248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 347
Target Start/End: Original strand, 31247912 - 31247966
Alignment:
| Q |
293 |
aggtaaagaattgtggttatcgttggatatttgaggaggatttggagcaattaaa |
347 |
Q |
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||||||| ||||||||||||| |||||||||| |||||||| |||| || ||||| |
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| T |
31247912 |
aggtaaaaaattgtggttatcattggatatttaaggaggatctggaacatttaaa |
31247966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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