View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8412_low_19 (Length: 345)
Name: NF8412_low_19
Description: NF8412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8412_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 325
Target Start/End: Complemental strand, 28128411 - 28128102
Alignment:
| Q |
16 |
ctgtgacactatttatttacactatagacgatgaaatgnnnnnnntgtcaaattttatagtaacagtactgagattgcttttgttttatttacaaattga |
115 |
Q |
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| T |
28128411 |
ctgtgacactatttatttacactatagacaatgaaatgaaaagaatgtcaaattttatagtaacagtactgagattgcttttgttttatttgcaaattga |
28128312 |
T |
|
| Q |
116 |
agagaaagaggtgcaaaagttgtggaaaatttggaagtagaaaatttaagcatcattctagacccttttcaaaatggtgaaatgataacctttcttccag |
215 |
Q |
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| T |
28128311 |
agagaaagaggtgcaaaagttgtggaaaatttggaagtagaaaatttaagtatcattctagacccttttcaaaatggtgaaatgataacctttcttccag |
28128212 |
T |
|
| Q |
216 |
aattgaagttgtccattaacaaatatctacaggagctcacttattctcccgtgaggtctctagctgagattatagaattcaacatcaataaccctaaatt |
315 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28128211 |
aattcaagttgtccattaacaaatatctacaggagctcacttattctcccgtgaggtctctagctgagattatagaattcaacatcaataaccctaaatt |
28128112 |
T |
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| Q |
316 |
agtaagtatc |
325 |
Q |
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|||||||||| |
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| T |
28128111 |
agtaagtatc |
28128102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 97 - 324
Target Start/End: Complemental strand, 28109831 - 28109604
Alignment:
| Q |
97 |
tgttttatttacaaattgaagagaaagaggtgcaaaagttgtggaaaatttggaagtagaaaatttaagcatcattctagacccttttcaaaatggtgaa |
196 |
Q |
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|||||||||| |||||| |||| |||||||||||| ||| ||||| ||||||||||| ||||||||||||||| || | ||||||| ||||| ||||||| |
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| T |
28109831 |
tgttttatttgcaaattcaagacaaagaggtgcaacagtggtggacaatttggaagtggaaaatttaagcatccttatggacccttctcaaagtggtgaa |
28109732 |
T |
|
| Q |
197 |
atgataacctttcttccagaattgaagttgtccattaacaaatatctacaggagctcacttattctcccgtgaggtctctagctgagattatagaattca |
296 |
Q |
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||| |||||| ||| |||||| ||||||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
28109731 |
atggcaaccttacttttagaattcaagttgtccatcaacaaatttctgcaggagctcatttattctcccgtgaggtctctagctgagattatagaattta |
28109632 |
T |
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| Q |
297 |
acatcaataaccctaaattagtaagtat |
324 |
Q |
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||||||| |||||||| ||||||||||| |
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| T |
28109631 |
acatcaacaaccctaatttagtaagtat |
28109604 |
T |
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