View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8412_low_21 (Length: 338)
Name: NF8412_low_21
Description: NF8412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8412_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 15 - 268
Target Start/End: Original strand, 32168382 - 32168635
Alignment:
| Q |
15 |
cagagatcaaaattttagaaaaattcaggactgtaaagtagtgccaaaatggcaaggtagtagttgtaaaagctacagagcagagagcttaaaccaataa |
114 |
Q |
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| T |
32168382 |
cagagatcaaaattttagaaaaattcaggactgtaaagtagtgccaaaatagcaaggtagtagttgtaaaagctacagagcagagagcttaaaccaatga |
32168481 |
T |
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| Q |
115 |
aaccgaaaaagaaatggtaaagataattggaatgtttctgaaaatagcacttcatcaaaagtttggtcaaagagaaaaatctttttacgtggaacaaaag |
214 |
Q |
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| T |
32168482 |
aaccgaaaaagaaatggtaaagataattggaatgtttctgaaaatagcactttatcaaaagtttggtcaaagagcaaaatctttttacgtggaacaaaag |
32168581 |
T |
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| Q |
215 |
aaagagaaataaacttcatataatttttataattaaagatgagtaatataaaca |
268 |
Q |
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| T |
32168582 |
aaagagaaataaacttcatataatttttataattaaagatgagtaatataaaca |
32168635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 321
Target Start/End: Original strand, 32168654 - 32168688
Alignment:
| Q |
287 |
aggatttatcaggaaattaaaatgatggtacatgt |
321 |
Q |
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| T |
32168654 |
aggatttatcaggaaattaaaatgatggtacatgt |
32168688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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