View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8412_low_5 (Length: 564)
Name: NF8412_low_5
Description: NF8412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8412_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 375
Target Start/End: Original strand, 49204996 - 49205354
Alignment:
| Q |
17 |
cagaagttgcgtaccttcgcttccatgaacaaacttcacacccttttccccaatacatgtagcattaaagtgtgctaccacgggaaacaccgcaatttta |
116 |
Q |
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| T |
49204996 |
cagaagttgcgtaccttggcttccatgaaccaacttcacacccttttccccagtacgtgtagcattaaagtgtgcttccacgggaaacaccgcaatttta |
49205095 |
T |
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| Q |
117 |
actcattcttggttagtttgatataaagctacattatatcctcgttaacaatggttttcataccttcgatattttctcaacaacaaatcaatacaagagg |
216 |
Q |
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| T |
49205096 |
actcattcttggttagtttgatataaagctacattgtatcctcgttaacaatggctttcataccttcgatattttatcagcaacaaatcaataaaagagg |
49205195 |
T |
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| Q |
217 |
actctatttcaaaatcttgtgcaccctccatctccatgagtttatctttgaaggaacatacacctttttcattaagacctaactccgtccaggcctcaat |
316 |
Q |
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| T |
49205196 |
actctatttcaaaatcttgtgcaccctccatctccatgagtttatctttgaaggaacatacacctttttcattaagacctaactccgtccaggcctcaac |
49205295 |
T |
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| Q |
317 |
tttataaccattaaaaggtaacacactacaaatcaaggacagggtgtaggattagtgga |
375 |
Q |
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| T |
49205296 |
tttataaccattaaaaggtaacacactacaaatcaaggacagggtgtaggattagtgga |
49205354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 8333136 - 8333067
Alignment:
| Q |
204 |
tcaatacaagaggactctatttcaaaatcttgtgcaccctccatctccatgagtttatctttgaaggaac |
273 |
Q |
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| T |
8333136 |
tcaatataagaggtctcaacttcaaaatcttgtgcacccaccatctcctagagtttatctttgtaggaac |
8333067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 261
Target Start/End: Complemental strand, 32191801 - 32191640
Alignment:
| Q |
100 |
gaaacaccgcaattttaactcattcttggttagtttgatataa-agctacattatatcctcgttaacaatggttttcataccttcgatattttc-tcaac |
197 |
Q |
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| T |
32191801 |
gaaacaccacaatttaaactcatcactggttagtttgatatcacagc-atattgcatccttcttaacaatagatttcatacctttgatatgctcctcaac |
32191703 |
T |
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| Q |
198 |
aacaaatcaatacaagaggactctatttcaaaatcttgtgcaccctccatctccatgagtttat |
261 |
Q |
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| T |
32191702 |
aatag-tcaatataagatgactctatttcaaaattgtgttcaccctccatcttcacgagtttat |
32191640 |
T |
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