View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8412_low_8 (Length: 542)
Name: NF8412_low_8
Description: NF8412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8412_low_8 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 533
Target Start/End: Complemental strand, 9197884 - 9197371
Alignment:
| Q |
19 |
gatgaaacattgtccccttccacatagcaatcgtgtagttttgcccgcataaaaatagctcacaatgcaacaatcca-tcttcattttcatgtgcagcaa |
117 |
Q |
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| T |
9197884 |
gatgaaacattgtccccttccacatagcaatcgtgtagttttgcccgcataaaaatagctcacaatgcaacaatccaatcttcattttcatgtgcagcaa |
9197785 |
T |
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| Q |
118 |
ccaattttcctatgcacaagaaacaagacacaacacaacacaatacatgtacagcagccaattatatatgcagcaacaaccaatcgatagttttatcata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9197784 |
ccaattttcctatgcacaagaaacaagacacaacacaacataatacatgtacagcagccaattatatatgcagcaacaaccaatcgatagttttatcata |
9197685 |
T |
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| Q |
218 |
tttttgtttttggagtaaaccattaagttggtcccnnnnnnnnaaatcattctcaaattaattctcgattctgttaatatttcaaactaaccaacaatta |
317 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||| |
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| T |
9197684 |
tttttgtttttggagtaaactattaagttggtcccttttttttaaatcattctcaaattaattctcgattctgctaatatttgaaactaatcaacaatta |
9197585 |
T |
|
| Q |
318 |
acttttatcgaactcttcaaacttttgtttacnnnnnnnnnnnnatatgctaatttgtcagctatatatcaagtacagtatcatttcacttattcacaac |
417 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
9197584 |
acttttatcgaacacttcaaacttttgtttac--ttttttttttatatgctaatttgtccgctatatattaagtacagtatcatttcacttattcacaac |
9197487 |
T |
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| Q |
418 |
ttgcttcaagttttaactagctgttttttaggtgaagttttaactaacttttctattatacattactttttactaaacatagcattacgcatttggtggg |
517 |
Q |
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| T |
9197486 |
ttgcttcaagttttaactagctgttttttaggtgaagttttaactaacttttctattatacattactttttactaaacatagcattacacatttggtggg |
9197387 |
T |
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| Q |
518 |
attaaatagaataata |
533 |
Q |
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| T |
9197386 |
attaaatagaataata |
9197371 |
T |
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Back To:
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Target: scaffold0252 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 301
Target Start/End: Complemental strand, 19957 - 19920
Alignment:
| Q |
264 |
tcattctcaaattaattctcgattctgttaatatttca |
301 |
Q |
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| T |
19957 |
tcattctcaaattaattcccgattctattaatatttca |
19920 |
T |
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