View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8412_low_9 (Length: 526)

Name: NF8412_low_9
Description: NF8412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8412_low_9
NF8412_low_9
[»] chr6 (5 HSPs)
chr6 (19-518)||(8445785-8446289)
chr6 (19-518)||(8454589-8455093)
chr6 (318-518)||(8441269-8441464)
chr6 (318-518)||(8450073-8450268)
chr6 (54-296)||(388427-388676)
[»] chr4 (4 HSPs)
chr4 (54-296)||(12099627-12099876)
chr4 (193-299)||(2857803-2857909)
chr4 (244-300)||(23540620-23540676)
chr4 (244-303)||(16833990-16834049)
[»] chr2 (4 HSPs)
chr2 (193-299)||(36682542-36682648)
chr2 (244-303)||(5709215-5709274)
chr2 (243-296)||(6747060-6747113)
chr2 (244-300)||(16464842-16464898)
[»] chr1 (3 HSPs)
chr1 (198-278)||(12496904-12496984)
chr1 (195-278)||(44921103-44921186)
chr1 (214-300)||(22855439-22855525)
[»] chr5 (2 HSPs)
chr5 (193-299)||(36830251-36830357)
chr5 (257-303)||(9964491-9964537)
[»] chr7 (2 HSPs)
chr7 (243-297)||(42648090-42648144)
chr7 (251-299)||(48187320-48187368)
[»] chr8 (1 HSPs)
chr8 (253-301)||(12667606-12667654)


Alignment Details
Target: chr6 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 19 - 518
Target Start/End: Complemental strand, 8446289 - 8445785
Alignment:
Q  19 gatgcttcttccacctgaacctcaaccaccgcccaccatacctcctcatccttctcgaattccacaaccactaccatgccttctttctccggtgatattg 118  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8446289 gatgcttcttccacctgaacctcaaccaccgtccaccatacctcctcatccttctcgaattccacaaccactaccatgccttctttctccggtgatattg 8446190  T
Q  119 aatcgtcgccggtgtgtgacagagagaggagaagaacgatgaggttaggggagagaagag-------gtacaattgcataaagagagggatgattttcca 211  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||       |||||||||||||||||||| |||||||||| |    
T  8446189 aatcgtcgccggtgtgtgacagagag--gagaagaacgatgaggttaggggagagaacagagaagatgtacaattgcataaagagagagatgattttcta 8446092  T
Q  212 aaattgtccttacactttaaaggaaattacaaaaaa-tgtcattggtgtcgtatttgtgtcaaaaaatcagtgtttgtttatcatttctgataactaaaa 310  Q
    ||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  8446091 aaattgtccttgcactttaaaggaaattacaaaaaaatgtcattgatgtcgtatttgtgtcaaaaaatttgtgtttgtttatcatttctgataactaaaa 8445992  T
Q  311 acccaggagtaaaacaaaatcttcaaattttgtttgagtctaggtcaaggtgactttcaaccgttaaaagtttgcttcaataaaataggtaaaaacatgt 410  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  8445991 acccaaaagtaaaacaaaatcttcaaattttgtttgagtctaggtcaaggtgactttcaaccgttaaaagtttacttcaacaaaataggtaaaaacatgt 8445892  T
Q  411 tgtacttgcaattgnnnnnnnggcttcttttgcttcacaagtaacagctagcacataggcatgcaaatcaaaagaccaatgtttttgtcaataaataggt 510  Q
    ||||||||||||||       ||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  8445891 tgtacttgcaattg-ctttttggcttcttttgcttcacgagtaacagctaacacatagacatgcaaatcaaaagaccaatgttattgtcaataaataggt 8445793  T
Q  511 ttcttctc 518  Q
    ||||||||    
T  8445792 ttcttctc 8445785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 19 - 518
Target Start/End: Complemental strand, 8455093 - 8454589
Alignment:
Q  19 gatgcttcttccacctgaacctcaaccaccgcccaccatacctcctcatccttctcgaattccacaaccactaccatgccttctttctccggtgatattg 118  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8455093 gatgcttcttccacctgaacctcaaccaccgtccaccatacctcctcatccttctcgaattccacaaccactaccatgccttctttctccggtgatattg 8454994  T
Q  119 aatcgtcgccggtgtgtgacagagagaggagaagaacgatgaggttaggggagagaagag-------gtacaattgcataaagagagggatgattttcca 211  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||       |||||||||||||||||||| |||||||||| |    
T  8454993 aatcgtcgccggtgtgtgacagagag--gagaagaacgatgaggttaggggagagaacagagaagatgtacaattgcataaagagagagatgattttcta 8454896  T
Q  212 aaattgtccttacactttaaaggaaattacaaaaaa-tgtcattggtgtcgtatttgtgtcaaaaaatcagtgtttgtttatcatttctgataactaaaa 310  Q
    ||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  8454895 aaattgtccttgcactttaaaggaaattacaaaaaaatgtcattgatgtcgtatttgtgtcaaaaaatttgtgtttgtttatcatttctgataactaaaa 8454796  T
Q  311 acccaggagtaaaacaaaatcttcaaattttgtttgagtctaggtcaaggtgactttcaaccgttaaaagtttgcttcaataaaataggtaaaaacatgt 410  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  8454795 acccaaaagtaaaacaaaatcttcaaattttgtttgagtctaggtcaaggtgactttcaaccgttaaaagtttacttcaacaaaataggtaaaaacatgt 8454696  T
Q  411 tgtacttgcaattgnnnnnnnggcttcttttgcttcacaagtaacagctagcacataggcatgcaaatcaaaagaccaatgtttttgtcaataaataggt 510  Q
    ||||||||||||||       ||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  8454695 tgtacttgcaattg-ctttttggcttcttttgcttcacgagtaacagctaacacatagacatgcaaatcaaaagaccaatgttattgtcaataaataggt 8454597  T
Q  511 ttcttctc 518  Q
    ||||||||    
T  8454596 ttcttctc 8454589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 318 - 518
Target Start/End: Complemental strand, 8441464 - 8441269
Alignment:
Q  318 agtaaaacaaaatcttcaaattttgtttgagtctaggtcaaggtgactttcaaccgttaaaagtttgcttcaataaaataggtaaaaacatgttgtactt 417  Q
    ||||||||||||| |||||||||||    ||||||||||||||||||||||| | ||||| |||||||||||| ||||||||||||||||||||||||||    
T  8441464 agtaaaacaaaatattcaaattttg----agtctaggtcaaggtgactttcagctgttaagagtttgcttcaacaaaataggtaaaaacatgttgtactt 8441369  T
Q  418 gcaattgnnnnnnnggcttcttttgcttcacaagtaacagctagcacataggcatgcaaatcaaaagaccaatgtttttgtcaataaataggtttcttct 517  Q
    |||||||       ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  8441368 gcaattgtttttt-ggcttcttttgcttcacgagtaacagctagcacatagacatgcaaatcaaaagaccaatgttattgtcaataaataggtttcttct 8441270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 318 - 518
Target Start/End: Complemental strand, 8450268 - 8450073
Alignment:
Q  318 agtaaaacaaaatcttcaaattttgtttgagtctaggtcaaggtgactttcaaccgttaaaagtttgcttcaataaaataggtaaaaacatgttgtactt 417  Q
    ||||||||||||| |||||||||||    ||||||||||||||||||||||| | ||||| |||||||||||| ||||||||||||||||||||||||||    
T  8450268 agtaaaacaaaatattcaaattttg----agtctaggtcaaggtgactttcagctgttaagagtttgcttcaacaaaataggtaaaaacatgttgtactt 8450173  T
Q  418 gcaattgnnnnnnnggcttcttttgcttcacaagtaacagctagcacataggcatgcaaatcaaaagaccaatgtttttgtcaataaataggtttcttct 517  Q
    |||||||       ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  8450172 gcaattgtttttt-ggcttcttttgcttcacgagtaacagctagcacatagacatgcaaatcaaaagaccaatgttattgtcaataaataggtttcttct 8450074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 54 - 296
Target Start/End: Complemental strand, 388676 - 388427
Alignment:
Q  54 ccatacctcctcatccttctcgaattccacaaccactaccatgccttctt--tctccggtgatattgaatcgtcgccggtgtgtgacagagagaggagaa 151  Q
    |||||||||||| ||||||||| ||||||||||||  |||||||||| ||  ||||||||||| |||  | ||||||||||||||||| ||| |||||||    
T  388676 ccatacctcctcctccttctcggattccacaaccatcaccatgcctttttattctccggtgat-ttgggtagtcgccggtgtgtgaca-agataggagaa 388579  T
Q  152 gaacgatgaggttagggga-------gagaagaggtacaattgcataaagagagggatgattttccaaaattgtccttacactttaaaggaaattacaa- 243  Q
    ||||||| |||||||||||       ||||||||||||| |||||||| || |||||||||||| ||||||||||||| ||||||||||| ||||||||     
T  388578 gaacgataaggttaggggaaagaagagagaagaggtacacttgcataagga-agggatgattttacaaaattgtccttgcactttaaagggaattacaaa 388480  T
Q  244 aaaatgtcattggtgtcgtatttgtgtcaaaaaatcagtgtttgtttatcatt 296  Q
    |||||  |||||||||||||||||||||  |||||| ||||||||||||||||    
T  388479 aaaataccattggtgtcgtatttgtgtctcaaaatctgtgtttgtttatcatt 388427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 4e-58; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 54 - 296
Target Start/End: Original strand, 12099627 - 12099876
Alignment:
Q  54 ccatacctcctcatccttctcgaattccacaaccactaccatgccttctt--tctccggtgatattgaatcgtcgccggtgtgtgacagagagaggagaa 151  Q
    |||||||||||| ||||||||| ||||||||||||  | |||||||||||  ||||||||||| |||  |||||||||||||||||||||||||||||||    
T  12099627 ccatacctcctcctccttctcggattccacaaccatcatcatgccttcttattctccggtgat-ttgggtcgtcgccggtgtgtgacagagagaggagaa 12099725  T
Q  152 gaacgatgaggttaggg-------gagagaagaggtacaattgcataaagagagggatgattttccaaaattgtccttacactttaaaggaaattacaaa 244  Q
    ||||||| |||||||||       |||||||||||||||  ||||||| || |||||||||||| ||||||||||||| ||||||||||| ||| | |||    
T  12099726 gaacgataaggttaggggaaagaagagagaagaggtacacatgcataagga-agggatgattttacaaaattgtccttgcactttaaagggaataaaaaa 12099824  T
Q  245 aaatgtcattggtgtcgtatttgtgtcaaaaaatcagtgtttgtttatcatt 296  Q
    ||||  |||||||||||||||||||||  |||||| ||||||||||||||||    
T  12099825 aaataccattggtgtcgtatttgtgtctcaaaatctgtgtttgtttatcatt 12099876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 193 - 299
Target Start/End: Original strand, 2857803 - 2857909
Alignment:
Q  193 agagagggatgattttccaaaattgtccttacactttaaaggaaattacaaaaaatgtcattggtgtcgtatttgtgtcaaaaaatcagtgtttgtttat 292  Q
    ||||||||| |||||  ||||||| ||||| || ||||||||||||||| ||||||| |||||||||| | |||||||||||||||| ||||||||||||    
T  2857803 agagagggacgatttcacaaaattttccttgcattttaaaggaaattacgaaaaatggcattggtgtcttttttgtgtcaaaaaatctgtgtttgtttat 2857902  T
Q  293 catttct 299  Q
    |||||||    
T  2857903 catttct 2857909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 23540620 - 23540676
Alignment:
Q  244 aaaatgtcattggtgtcgtatttgtgtcaaaaaatcagtgtttgtttatcatttctg 300  Q
    |||||||||||||| | ||| ||||||| ||||||  ||||||||||||||||||||    
T  23540620 aaaatgtcattggtattgtaattgtgtctaaaaatttgtgtttgtttatcatttctg 23540676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 16834049 - 16833990
Alignment:
Q  244 aaaatgtcattggtgtcgtatttgtgtcaaaaaatcagtgtttgtttatcatttctgata 303  Q
    |||||| || || |||||||||||||||||||  |  |||||||||||||||||||||||    
T  16834049 aaaatgccactgatgtcgtatttgtgtcaaaagttatgtgtttgtttatcatttctgata 16833990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 193 - 299
Target Start/End: Complemental strand, 36682648 - 36682542
Alignment:
Q  193 agagagggatgattttccaaaattgtccttacactttaaaggaaattacaaaaaatgtcattggtgtcgtatttgtgtcaaaaaatcagtgtttgtttat 292  Q
    |||||||||||||||  ||||||| ||||| ||||||||| ||||||||||||| || |||||||||| | |||||||||||||| | ||||||||||||    
T  36682648 agagagggatgatttcacaaaattatccttgcactttaaaagaaattacaaaaattgccattggtgtcttttttgtgtcaaaaaacctgtgtttgtttat 36682549  T
Q  293 catttct 299  Q
    |||||||    
T  36682548 catttct 36682542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 5709274 - 5709215
Alignment:
Q  244 aaaatgtcattggtgtcgtatttgtgtcaaaaaatcagtgtttgtttatcatttctgata 303  Q
    |||||| || || ||||||||||||||||||| ||  |||||||||||||||||||||||    
T  5709274 aaaatgccactgatgtcgtatttgtgtcaaaatatatgtgtttgtttatcatttctgata 5709215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 6747060 - 6747113
Alignment:
Q  243 aaaaatgtcattggtgtcgtatttgtgtcaaaaaatcagtgtttgtttatcatt 296  Q
    |||| |||||||||||| |||||||||||||||  |  ||||||||||||||||    
T  6747060 aaaattgtcattggtgttgtatttgtgtcaaaatttgtgtgtttgtttatcatt 6747113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 16464842 - 16464898
Alignment:
Q  244 aaaatgtcattggtgtcgtatttgtgtcaaaaaatcagtgtttgtttatcatttctg 300  Q
    |||||| || || |||||||||||||||||||  |  ||||||||||||||||||||    
T  16464842 aaaatgccactgatgtcgtatttgtgtcaaaagttatgtgtttgtttatcatttctg 16464898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 12496904 - 12496984
Alignment:
Q  198 gggatgattttccaaaattgtccttacactttaaaggaaattacaaaaaatgtcattggtgtcgtatttgtgtcaaaaaat 278  Q
    ||||||||||| ||||||||||||| || |||||||||||||||||||||| ||||||||||| | |||||||||||||||    
T  12496904 gggatgattttacaaaattgtccttgcaatttaaaggaaattacaaaaaatctcattggtgtcatttttgtgtcaaaaaat 12496984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 44921103 - 44921186
Alignment:
Q  195 agagggatgattttccaaaattgtccttacactttaaaggaaattacaaaaaatgtcattggtgtcgtatttgtgtcaaaaaat 278  Q
    |||||||||||||| ||||||| | | | |||||||||| ||||||||||||||||||||||||||   ||||||| |||||||    
T  44921103 agagggatgattttacaaaattattcctgcactttaaagaaaattacaaaaaatgtcattggtgtccattttgtgtaaaaaaat 44921186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 214 - 300
Target Start/End: Complemental strand, 22855525 - 22855439
Alignment:
Q  214 attgtccttacactttaaaggaaattacaaaaaatgtcattggtgtcgtatttgtgtcaaaaaatcagtgtttgtttatcatttctg 300  Q
    ||||||||| |||||||||| |||||||| |||||  |||||||||| | |||||||||||||||  |||||  | |||||||||||    
T  22855525 attgtccttgcactttaaagaaaattacagaaaataccattggtgtcatttttgtgtcaaaaaatgtgtgttcatgtatcatttctg 22855439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 193 - 299
Target Start/End: Original strand, 36830251 - 36830357
Alignment:
Q  193 agagagggatgattttccaaaattgtccttacactttaaaggaaattacaaaaaatgtcattggtgtcgtatttgtgtcaaaaaatcagtgtttgtttat 292  Q
    |||||||||||||||   |||||| ||| | ||||||||| |||||||||||||||| |||||||||| | |||||| ||||||| |  ||| |||||||    
T  36830251 agagagggatgatttcataaaattatccatgcactttaaaagaaattacaaaaaatgccattggtgtcttttttgtgccaaaaaacctatgtctgtttat 36830350  T
Q  293 catttct 299  Q
    |||||||    
T  36830351 catttct 36830357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 9964491 - 9964537
Alignment:
Q  257 tgtcgtatttgtgtcaaaaaatcagtgtttgtttatcatttctgata 303  Q
    |||||||||| |||||||| ||  |||||||||||||||||||||||    
T  9964491 tgtcgtatttatgtcaaaatatatgtgtttgtttatcatttctgata 9964537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 297
Target Start/End: Original strand, 42648090 - 42648144
Alignment:
Q  243 aaaaatgtcattggtgtcgtatttgtgtcaaaaaatcagtgtttgtttatcattt 297  Q
    ||||||| ||||| ||||||||||||||||||| ||  |||||||||||||||||    
T  42648090 aaaaatgccattgatgtcgtatttgtgtcaaaatatatgtgtttgtttatcattt 42648144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 48187320 - 48187368
Alignment:
Q  251 cattggtgtcgtatttgtgtcaaaaaatcagtgtttgtttatcatttct 299  Q
    ||||||||||||||||||||| |||| |  |||||||||||| ||||||    
T  48187320 cattggtgtcgtatttgtgtctaaaattgtgtgtttgtttattatttct 48187368  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 301
Target Start/End: Original strand, 12667606 - 12667654
Alignment:
Q  253 ttggtgtcgtatttgtgtcaaaaaatcagtgtttgtttatcatttctga 301  Q
    ||||||| |||||||||||||| |||  ||||| |||||||||||||||    
T  12667606 ttggtgttgtatttgtgtcaaataatatgtgttcgtttatcatttctga 12667654  T

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