View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8413_high_1 (Length: 533)

Name: NF8413_high_1
Description: NF8413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8413_high_1
NF8413_high_1
[»] chr2 (5 HSPs)
chr2 (19-142)||(10973998-10974121)
chr2 (453-525)||(10973705-10973777)
chr2 (453-514)||(2973587-2973648)
chr2 (453-526)||(14230934-14231007)
chr2 (453-507)||(17826658-17826712)
[»] chr1 (6 HSPs)
chr1 (266-355)||(47063063-47063148)
chr1 (231-296)||(47026785-47026850)
chr1 (249-301)||(47030738-47030790)
chr1 (266-310)||(47061535-47061579)
chr1 (453-525)||(47726169-47726241)
chr1 (453-525)||(47747475-47747547)
[»] chr4 (6 HSPs)
chr4 (464-526)||(27066502-27066564)
chr4 (453-520)||(54027864-54027931)
chr4 (453-519)||(12355135-12355201)
chr4 (464-526)||(27066696-27066758)
chr4 (464-526)||(27066890-27066952)
chr4 (464-526)||(27087603-27087665)
[»] chr6 (1 HSPs)
chr6 (453-526)||(30141094-30141167)
[»] chr8 (1 HSPs)
chr8 (470-525)||(10601022-10601077)
[»] chr5 (1 HSPs)
chr5 (464-520)||(5335371-5335427)
[»] scaffold1964 (1 HSPs)
scaffold1964 (453-525)||(1023-1095)


Alignment Details
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 10974121 - 10973998
Alignment:
Q  19 gatatagaaacgaagttgataattctagaatttataaaaacttaaacttaggtttgaggtgatggcaccaaaaagaaatggagatgaggctgtgaaaagt 118  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10974121 gatatagaaacgaagttgataattctagaatttatataaacttaaacttaggtttgaggtgatggcaccaaaaagaaatggagatgaggctgtggaaagt 10974022  T
Q  119 gggaatcaaaaatatgtccggcac 142  Q
    ||||| ||||||||||||||||||    
T  10974021 gggaaccaaaaatatgtccggcac 10973998  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 453 - 525
Target Start/End: Complemental strand, 10973777 - 10973705
Alignment:
Q  453 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgct 525  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  10973777 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacggcttcccggtctttgct 10973705  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 453 - 514
Target Start/End: Complemental strand, 2973648 - 2973587
Alignment:
Q  453 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcc 514  Q
    |||||||||| || ||||||| |||||||||||| |||||||| |||||||||||| |||||    
T  2973648 aagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggcttcc 2973587  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 453 - 526
Target Start/End: Original strand, 14230934 - 14231007
Alignment:
Q  453 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgctt 526  Q
    |||||| ||| |||||||||| |||||||||||| |||||||| |||||||||||  | ||||||||| |||||    
T  14230934 aagatggtctttattcgggtcgggaagacataaccgaatttggaaacatcatcacagcctcccggtctttgctt 14231007  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 507
Target Start/End: Original strand, 17826658 - 17826712
Alignment:
Q  453 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcac 507  Q
    |||||||||| |||||| ||| |||||| ||||| ||||||||||||||||||||    
T  17826658 aagatgctctttattcgtgtcgggaagatataaccgaatttggtaacatcatcac 17826712  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 266 - 355
Target Start/End: Original strand, 47063063 - 47063148
Alignment:
Q  266 atgtatgtaatgtttctttgcagcgatgtggaactagaaggcgttgtttctactatatatctactatccactcccaccccaaacttggca 355  Q
    ||||||| ||||||||||||||||||||||| ||||  ||||||| |||||||    |||||||| ||||||| |||||| |||||||||    
T  47063063 atgtatgaaatgtttctttgcagcgatgtgggactaccaggcgttatttctac----tatctactctccactctcacccccaacttggca 47063148  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 47026785 - 47026850
Alignment:
Q  231 tgactttgtcaaaggcacttatataagatatcttcatgtatgtaatgtttctttgcagcgatgtgg 296  Q
    ||||| ||||||||||| |||||||| | || | |||||||| ||||||| |||||||||||||||    
T  47026785 tgactctgtcaaaggcaattatataaaacatgtccatgtatgcaatgtttgtttgcagcgatgtgg 47026850  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 47030738 - 47030790
Alignment:
Q  249 ttatataagatatcttcatgtatgtaatgtttctttgcagcgatgtggaacta 301  Q
    |||||||||||||||||| ||||  |||||| ||||| |||||||||| ||||    
T  47030738 ttatataagatatcttcaagtatagaatgttactttggagcgatgtgggacta 47030790  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 47061535 - 47061579
Alignment:
Q  266 atgtatgtaatgtttctttgcagcgatgtggaactagaaggcgtt 310  Q
    ||||||| |||||||||||| |||||||||| |||| ||||||||    
T  47061535 atgtatgcaatgtttctttgaagcgatgtgggactaaaaggcgtt 47061579  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 525
Target Start/End: Original strand, 47726169 - 47726241
Alignment:
Q  453 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgct 525  Q
    |||| ||||| || ||| ||| |||||||||||| |||||||| |||||||||||   |||||||||| ||||    
T  47726169 aagacgctctttactcgagtcgggaagacataactgaatttggcaacatcatcacatattcccggtctttgct 47726241  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 525
Target Start/End: Original strand, 47747475 - 47747547
Alignment:
Q  453 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgct 525  Q
    |||| ||||| || ||| ||| |||||||||||| |||||||| |||||||||||   |||||||||| ||||    
T  47747475 aagacgctctttactcgagtcgggaagacataactgaatttggcaacatcatcacatattcccggtctttgct 47747547  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 464 - 526
Target Start/End: Complemental strand, 27066564 - 27066502
Alignment:
Q  464 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgctt 526  Q
    |||||||||| |||||||||||  |||||||| ||||||||||| |||||||||||| |||||    
T  27066564 tattcgggtcgggaagacataatggaatttggaaacatcatcacaacttcccggtctttgctt 27066502  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 453 - 520
Target Start/End: Complemental strand, 54027931 - 54027864
Alignment:
Q  453 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtct 520  Q
    |||| ||||| | |||| ||| |||||| ||||| |||||||||||||||||||| ||||||||||||    
T  54027931 aagacgctctttgttcgagtcgggaagatataaccgaatttggtaacatcatcacaacttcccggtct 54027864  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 519
Target Start/End: Original strand, 12355135 - 12355201
Alignment:
Q  453 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtc 519  Q
    |||||| ||| |||||||||| |||||||||||| |||||||| || ||||||||  ||||||||||    
T  12355135 aagatggtctttattcgggtcgggaagacataacggaatttggaaatatcatcacagcttcccggtc 12355201  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 526
Target Start/End: Complemental strand, 27066758 - 27066696
Alignment:
Q  464 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgctt 526  Q
    |||||||||| |||||||||||  |||||||| ||||||||||| |||| ||||||| |||||    
T  27066758 tattcgggtcgggaagacataatggaatttggaaacatcatcacaactttccggtctttgctt 27066696  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 526
Target Start/End: Complemental strand, 27066952 - 27066890
Alignment:
Q  464 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgctt 526  Q
    |||||||||| |||||||||||  |||||||| ||||||||||| |||| ||||||| |||||    
T  27066952 tattcgggtcgggaagacataatggaatttggaaacatcatcacaactttccggtctttgctt 27066890  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 526
Target Start/End: Complemental strand, 27087665 - 27087603
Alignment:
Q  464 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgctt 526  Q
    |||||||||| |||||||||||  |||||||| ||||||||||| |||| ||||||| |||||    
T  27087665 tattcgggtcgggaagacataatggaatttggaaacatcatcacaactttccggtctttgctt 27087603  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 453 - 526
Target Start/End: Complemental strand, 30141167 - 30141094
Alignment:
Q  453 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgctt 526  Q
    |||||| ||| |||||||||| |||||||||||| |||| ||| |||||||||||  ||||||||||| |||||    
T  30141167 aagatggtctttattcgggtcgggaagacataacggaatgtggaaacatcatcacagcttcccggtctttgctt 30141094  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 470 - 525
Target Start/End: Original strand, 10601022 - 10601077
Alignment:
Q  470 ggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgct 525  Q
    |||| |||||||||||| |||||||| |||||||||||||||| ||||||| ||||    
T  10601022 ggtcgggaagacataactgaatttggcaacatcatcacgactttccggtctttgct 10601077  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 520
Target Start/End: Complemental strand, 5335427 - 5335371
Alignment:
Q  464 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtct 520  Q
    |||||||||| |||||||||||| |||||||| |||||||||||  |||||| ||||    
T  5335427 tattcgggtcgggaagacataactgaatttggaaacatcatcacagcttcccagtct 5335371  T

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Target: scaffold1964 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1964
Description:

Target: scaffold1964; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 525
Target Start/End: Original strand, 1023 - 1095
Alignment:
Q  453 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgct 525  Q
    |||| ||||| || ||||||| |||||||||||| |||||||| ||||| |||||| ||| || |||| ||||    
T  1023 aagacgctctttactcgggtcgggaagacataactgaatttggcaacattatcacggctttccagtctttgct 1095  T

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