View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8413_low_11 (Length: 319)
Name: NF8413_low_11
Description: NF8413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8413_low_11 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 4e-75; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 127 - 319
Target Start/End: Original strand, 9196974 - 9197159
Alignment:
| Q |
127 |
ggtaattttgggtcaaaattgatccttaatcacccctattcgagatatgaagaagaataaaagtggtgacgattagagtctcgaaaggagaggagagaga |
226 |
Q |
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| T |
9196974 |
ggtaattttgggtcaaaattgatccttaat-------attcgagatatgaagaagaataaaagtggtgactattagggtctcgaaaggagaggagagaga |
9197066 |
T |
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| Q |
227 |
agagtatcaatatatttcttgatgatatgattgtttcaagggatgattgttattattagcttagaattgattttatttttgagattatttgta |
319 |
Q |
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| T |
9197067 |
agagtatcaatatattacttgatgatatgtttgtttcaagggatgattgttattattagctcaaaattgattttatttttgagattatttgta |
9197159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 9196856 - 9196945
Alignment:
| Q |
18 |
atcaaaacaaacagcactgtgcaaagacgaagaaatcaaacgaaacaa---------gattgaaaatatgtgaaaatcacttacttaatt |
98 |
Q |
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| T |
9196856 |
atcaaaacaaacagtgctgtgcaaagacaaagaaatcaaaggaaacaaacgaaataagattaaaaatatgtgaaaatcacttacttaatt |
9196945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 585896 - 585860
Alignment:
| Q |
54 |
caaacgaaacaagattgaaaatatgtgaaaatcactt |
90 |
Q |
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| T |
585896 |
caaacgaaataagattgaaaatatgtgaaaatcactt |
585860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 13161518 - 13161478
Alignment:
| Q |
56 |
aacgaaacaagattgaaaatatgtgaaaatcacttacttaa |
96 |
Q |
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| T |
13161518 |
aacgaaataagatttaaaatatgtgaaaatcacttacttaa |
13161478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 1419090 - 1419136
Alignment:
| Q |
50 |
aaatcaaacgaaacaagattgaaaatatgtgaaaatcacttacttaa |
96 |
Q |
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| T |
1419090 |
aaatcaaatgaaataatattgaaaatatgtgaaaatcacttatttaa |
1419136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 10833136 - 10833104
Alignment:
| Q |
59 |
gaaacaagattgaaaatatgtgaaaatcactta |
91 |
Q |
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| T |
10833136 |
gaaaaaagattgaaaatatgtgaaaatcactta |
10833104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 38431526 - 38431568
Alignment:
| Q |
54 |
caaacgaaacaagattgaaaatatgtgaaaatcacttacttaa |
96 |
Q |
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| T |
38431526 |
caaacgaaataagattgaaaatatgtgaaaatcgcttatttaa |
38431568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 39797955 - 39797913
Alignment:
| Q |
54 |
caaacgaaacaagattgaaaatatgtgaaaatcacttacttaa |
96 |
Q |
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| T |
39797955 |
caaacgaaagaagattgaaaatatatgaaaatcacttatttaa |
39797913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 19745400 - 19745367
Alignment:
| Q |
132 |
ttttgggtcaaaattgatccttaatcacccctat |
165 |
Q |
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| T |
19745400 |
ttttgggtcaaaattgatcctaaatcacccctat |
19745367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 19794406 - 19794439
Alignment:
| Q |
132 |
ttttgggtcaaaattgatccttaatcacccctat |
165 |
Q |
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| T |
19794406 |
ttttgggtcaaaattgatcctaaatcacccctat |
19794439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 45681960 - 45681996
Alignment:
| Q |
54 |
caaacgaaacaagattgaaaatatgtgaaaatcactt |
90 |
Q |
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| T |
45681960 |
caaacgaaataagattgaaaatatgtgaaaaccactt |
45681996 |
T |
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