View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8413_low_12 (Length: 305)

Name: NF8413_low_12
Description: NF8413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8413_low_12
NF8413_low_12
[»] chr4 (35 HSPs)
chr4 (55-305)||(4331020-4331270)
chr4 (15-57)||(23369217-23369259)
chr4 (15-56)||(26732369-26732410)
chr4 (15-56)||(51986186-51986227)
chr4 (19-63)||(2268398-2268442)
chr4 (15-58)||(37297192-37297235)
chr4 (15-54)||(43175128-43175167)
chr4 (15-54)||(53786103-53786142)
chr4 (15-54)||(53801647-53801686)
chr4 (17-55)||(27965131-27965169)
chr4 (15-57)||(44539878-44539920)
chr4 (15-56)||(29175369-29175410)
chr4 (15-55)||(26724859-26724899)
chr4 (18-54)||(46634235-46634271)
chr4 (15-54)||(15175690-15175729)
chr4 (15-54)||(39440628-39440667)
chr4 (15-57)||(38382465-38382507)
chr4 (15-57)||(47181985-47182027)
chr4 (15-57)||(48402082-48402124)
chr4 (15-56)||(10250401-10250442)
chr4 (15-56)||(11068832-11068873)
chr4 (15-56)||(26492151-26492192)
chr4 (15-48)||(45083116-45083149)
chr4 (15-51)||(24575742-24575778)
chr4 (19-54)||(42360292-42360327)
chr4 (15-54)||(46213114-46213153)
chr4 (15-57)||(34616705-34616747)
chr4 (15-57)||(56363930-56363972)
chr4 (15-56)||(2575676-2575717)
chr4 (14-51)||(25123178-25123215)
chr4 (15-56)||(31641451-31641492)
chr4 (15-55)||(5622602-5622642)
chr4 (15-55)||(27050973-27051013)
chr4 (19-55)||(29531505-29531541)
chr4 (15-55)||(36178050-36178090)
[»] chr1 (29 HSPs)
chr1 (210-299)||(17779548-17779636)
chr1 (67-140)||(17779343-17779416)
chr1 (15-59)||(27464940-27464984)
chr1 (15-57)||(31088325-31088367)
chr1 (15-57)||(45121366-45121408)
chr1 (15-56)||(19055645-19055686)
chr1 (16-63)||(8350078-8350125)
chr1 (15-54)||(26469503-26469542)
chr1 (15-54)||(48470783-48470822)
chr1 (18-56)||(41677222-41677260)
chr1 (15-56)||(649913-649954)
chr1 (15-56)||(21401542-21401583)
chr1 (13-54)||(44914459-44914500)
chr1 (15-56)||(45640445-45640486)
chr1 (15-55)||(33100952-33100992)
chr1 (15-50)||(35369844-35369879)
chr1 (15-54)||(37619688-37619727)
chr1 (15-54)||(44519039-44519078)
chr1 (15-48)||(3851302-3851335)
chr1 (15-56)||(37274919-37274960)
chr1 (15-48)||(50932448-50932481)
chr1 (19-54)||(3981914-3981949)
chr1 (23-54)||(50726136-50726167)
chr1 (19-57)||(29359773-29359811)
chr1 (15-57)||(46907339-46907381)
chr1 (15-56)||(23645555-23645596)
chr1 (15-56)||(43775350-43775391)
chr1 (15-56)||(50333352-50333393)
chr1 (19-51)||(12657359-12657391)
[»] chr5 (24 HSPs)
chr5 (15-59)||(1671686-1671730)
chr5 (15-57)||(1274501-1274543)
chr5 (15-57)||(26791129-26791171)
chr5 (15-56)||(18258679-18258720)
chr5 (15-55)||(35634722-35634762)
chr5 (15-54)||(28306020-28306059)
chr5 (15-54)||(33037664-33037703)
chr5 (15-54)||(7287077-7287116)
chr5 (15-54)||(15479613-15479652)
chr5 (15-53)||(1764368-1764406)
chr5 (16-54)||(14923218-14923256)
chr5 (15-57)||(17626130-17626172)
chr5 (18-56)||(35646518-35646556)
chr5 (23-57)||(36739100-36739134)
chr5 (15-56)||(8687035-8687076)
chr5 (15-55)||(5168327-5168367)
chr5 (15-54)||(41321399-41321438)
chr5 (15-53)||(13168666-13168704)
chr5 (15-53)||(42175063-42175101)
chr5 (15-56)||(7552853-7552894)
chr5 (15-56)||(22972261-22972302)
chr5 (15-56)||(28467339-28467380)
chr5 (15-51)||(2972468-2972504)
chr5 (15-55)||(14051202-14051242)
[»] chr2 (23 HSPs)
chr2 (15-57)||(1248830-1248872)
chr2 (15-56)||(18254095-18254136)
chr2 (15-56)||(21611541-21611582)
chr2 (15-56)||(22888703-22888744)
chr2 (15-57)||(43487523-43487565)
chr2 (15-56)||(9760162-9760203)
chr2 (15-56)||(9990835-9990876)
chr2 (19-56)||(22416349-22416386)
chr2 (15-56)||(32477476-32477517)
chr2 (15-56)||(42421784-42421825)
chr2 (15-51)||(6049236-6049272)
chr2 (15-55)||(37737858-37737898)
chr2 (15-54)||(3838768-3838807)
chr2 (15-57)||(2076713-2076755)
chr2 (15-57)||(3097746-3097788)
chr2 (16-57)||(25270467-25270508)
chr2 (15-56)||(41042398-41042439)
chr2 (15-55)||(41195728-41195768)
chr2 (15-57)||(13333055-13333097)
chr2 (20-54)||(17388503-17388537)
chr2 (15-53)||(41056636-41056674)
chr2 (15-56)||(9194385-9194426)
chr2 (15-56)||(9647276-9647317)
[»] chr8 (16 HSPs)
chr8 (16-57)||(27325903-27325944)
chr8 (19-57)||(31249421-31249459)
chr8 (15-56)||(12898815-12898856)
chr8 (15-55)||(34186751-34186791)
chr8 (15-54)||(22719584-22719623)
chr8 (15-56)||(37449311-37449352)
chr8 (15-51)||(36816507-36816543)
chr8 (15-54)||(4054174-4054213)
chr8 (15-54)||(7271994-7272033)
chr8 (23-54)||(42768356-42768387)
chr8 (17-55)||(10692577-10692615)
chr8 (15-53)||(36660339-36660377)
chr8 (15-56)||(13106624-13106665)
chr8 (15-55)||(29025404-29025444)
chr8 (23-51)||(32501087-32501115)
chr8 (16-48)||(36251471-36251503)
[»] chr3 (42 HSPs)
chr3 (15-56)||(27541388-27541429)
chr3 (15-56)||(33939382-33939423)
chr3 (15-59)||(16969449-16969493)
chr3 (15-54)||(13735874-13735913)
chr3 (15-54)||(32924169-32924208)
chr3 (17-56)||(44856099-44856138)
chr3 (16-55)||(52939796-52939835)
chr3 (15-57)||(52326163-52326205)
chr3 (16-56)||(38926773-38926813)
chr3 (15-51)||(42358529-42358565)
chr3 (15-54)||(7934118-7934157)
chr3 (15-54)||(19149134-19149173)
chr3 (17-56)||(31157563-31157602)
chr3 (15-54)||(36670902-36670941)
chr3 (19-54)||(41505627-41505662)
chr3 (15-54)||(42356972-42357011)
chr3 (15-54)||(44413283-44413322)
chr3 (15-57)||(21217656-21217698)
chr3 (15-57)||(37056942-37056984)
chr3 (15-57)||(44383333-44383375)
chr3 (15-57)||(44813280-44813322)
chr3 (15-57)||(46624051-46624093)
chr3 (15-56)||(7668074-7668115)
chr3 (18-54)||(288873-288909)
chr3 (15-55)||(41309261-41309301)
chr3 (15-55)||(52254025-52254065)
chr3 (15-55)||(55151604-55151644)
chr3 (15-54)||(47472473-47472512)
chr3 (15-53)||(23592602-23592640)
chr3 (15-53)||(23600737-23600775)
chr3 (15-53)||(24256660-24256698)
chr3 (15-57)||(35376966-35377008)
chr3 (15-53)||(35597306-35597344)
chr3 (15-56)||(5114222-5114263)
chr3 (15-56)||(13348020-13348061)
chr3 (15-56)||(25641469-25641510)
chr3 (19-56)||(33791668-33791705)
chr3 (15-56)||(37302690-37302731)
chr3 (27-56)||(42478115-42478144)
chr3 (15-56)||(44445438-44445479)
chr3 (27-56)||(45000201-45000230)
chr3 (15-51)||(8847254-8847289)
[»] chr6 (12 HSPs)
chr6 (15-55)||(32316815-32316855)
chr6 (15-54)||(552937-552976)
chr6 (15-56)||(15974752-15974793)
chr6 (15-54)||(13689882-13689921)
chr6 (15-57)||(16199594-16199636)
chr6 (15-56)||(26595493-26595534)
chr6 (15-56)||(33430248-33430289)
chr6 (15-56)||(34047531-34047572)
chr6 (15-55)||(1156864-1156904)
chr6 (19-55)||(8098496-8098532)
chr6 (23-54)||(5080467-5080498)
chr6 (15-49)||(18737460-18737494)
[»] chr7 (18 HSPs)
chr7 (15-54)||(38956506-38956545)
chr7 (15-56)||(3937009-3937050)
chr7 (19-54)||(38073356-38073391)
chr7 (15-54)||(41989628-41989667)
chr7 (15-57)||(7701688-7701730)
chr7 (17-55)||(40112841-40112879)
chr7 (15-57)||(46022152-46022194)
chr7 (23-56)||(43942784-43942817)
chr7 (15-55)||(24614203-24614243)
chr7 (15-55)||(43025484-43025524)
chr7 (15-54)||(44895460-44895499)
chr7 (15-53)||(32529745-32529783)
chr7 (15-56)||(25192803-25192844)
chr7 (15-52)||(32803833-32803870)
chr7 (15-55)||(3614333-3614373)
chr7 (15-55)||(35072249-35072289)
chr7 (15-55)||(35098590-35098630)
chr7 (14-54)||(45851095-45851135)
[»] scaffold0199 (1 HSPs)
scaffold0199 (15-56)||(8812-8853)
[»] scaffold0056 (1 HSPs)
scaffold0056 (15-56)||(76505-76546)
[»] scaffold0098 (1 HSPs)
scaffold0098 (15-54)||(49439-49478)
[»] scaffold0067 (1 HSPs)
scaffold0067 (20-54)||(35660-35694)
[»] scaffold0184 (1 HSPs)
scaffold0184 (15-55)||(16676-16716)
[»] scaffold0078 (1 HSPs)
scaffold0078 (15-55)||(56128-56168)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 55 - 305
Target Start/End: Complemental strand, 4331270 - 4331020
Alignment:
Q  55 ttacctaaattagtttggtgggatttgaattctagatggaaactgggaagctacatgacgagcttctttagttaggcatacatcttacatacatgatgtg 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4331270 ttacctaaattagtttggtgggatttgaattctagatggaaactgggaagctacatgacgagcttctttagttaggcatacatcttacatacatgatgtg 4331171  T
Q  155 gtagcttgattaatgtaaaaatgaaacaacagaataaaattcataaatgaggtaatcttggtacctgatgtgaaaataaataagccaactataagtcaat 254  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4331170 gtagcttgattaatgtaaaaatgaaacaatagaataaaattcataaatgaggtaatcttggtacctgatgtgaaaataaataagtcaactataagtcaat 4331071  T
Q  255 cataagcttgtataatcaggtaacaattactctttactctttacctctgct 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4331070 cataagcttgtataatcaggtaacaattactctttactctttaccactgct 4331020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 23369259 - 23369217
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  23369259 aaaagttgtcacatatatggatgttcaaataacacaactctta 23369217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 26732369 - 26732410
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  26732369 aaaagttgtcacatatatggatgttcaaataacacaactctt 26732410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 51986186 - 51986227
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  51986186 aaaagttgtcacatatatggatgttcaaataacacaactctt 51986227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 2268442 - 2268398
Alignment:
Q  19 gttgtcacatatatggatgttcaaataacacaactcttacctaaa 63  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  2268442 gttgtcacatatatggatgttcaaataacacaactcttagctaaa 2268398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 37297192 - 37297235
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactcttac 58  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  37297192 aaaagttgtcaaatatatggatgttcaaataacacaactcttac 37297235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 43175128 - 43175167
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43175128 aaaagttgtcacatatatggatgttcaaataacacaactc 43175167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 53786142 - 53786103
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  53786142 aaaagttgtcacatatatggatgttcaaataacacaactc 53786103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 53801686 - 53801647
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  53801686 aaaagttgtcacatatatggatgttcaaataacacaactc 53801647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 27965131 - 27965169
Alignment:
Q  17 aagttgtcacatatatggatgttcaaataacacaactct 55  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27965131 aagttgtcacatatatggatgttcaaataacacaactct 27965169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 44539878 - 44539920
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  44539878 aaaagttgtcacatatatgaatgttcaaataacacaactctta 44539920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 29175369 - 29175410
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  29175369 aaaagttgtcacatatatgaatgttcaaataacacaactctt 29175410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 26724899 - 26724859
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  26724899 aaaagttatcacatatatggatgttcaaataacacaactct 26724859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 46634235 - 46634271
Alignment:
Q  18 agttgtcacatatatggatgttcaaataacacaactc 54  Q
    |||||||||||||||||||||||||||||||||||||    
T  46634235 agttgtcacatatatggatgttcaaataacacaactc 46634271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 15175690 - 15175729
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  15175690 aaaagttgtcacatatatggatgttcaaataatacaactc 15175729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 39440628 - 39440667
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  39440628 aaaagttgtcacatatatgaatgttcaaataacacaactc 39440667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 38382465 - 38382507
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    ||||||||||| ||| |||||||||||||||||||||||||||    
T  38382465 aaaagttgtcatataaatggatgttcaaataacacaactctta 38382507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 47181985 - 47182027
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    ||||||||||| ||| |||||||||||||||||||||||||||    
T  47181985 aaaagttgtcatataaatggatgttcaaataacacaactctta 47182027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 48402124 - 48402082
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    ||||||||||| ||| |||||||||||||||||||||||||||    
T  48402124 aaaagttgtcatataaatggatgttcaaataacacaactctta 48402082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 10250442 - 10250401
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    |||||||||| |||||||||||||||||||||||||| ||||    
T  10250442 aaaagttgtcgcatatatggatgttcaaataacacaattctt 10250401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 11068832 - 11068873
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  11068832 aaaagttgtcacatatatgaatgttcaaataacacaattctt 11068873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 26492151 - 26492192
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    |||| ||||||||||||| |||||||||||||||||||||||    
T  26492151 aaaaattgtcacatatatagatgttcaaataacacaactctt 26492192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 45083116 - 45083149
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataaca 48  Q
    ||||||||||||||||||||||||||||||||||    
T  45083116 aaaagttgtcacatatatggatgttcaaataaca 45083149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 24575778 - 24575742
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaa 51  Q
    |||||||||||||||||| ||||||||||||||||||    
T  24575778 aaaagttgtcacatatatagatgttcaaataacacaa 24575742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 42360292 - 42360327
Alignment:
Q  19 gttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||||| ||||||||||||||||||||    
T  42360292 gttgtcacatatatgaatgttcaaataacacaactc 42360327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 46213114 - 46213153
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  46213114 aaaagttttcacatatatggattttcaaataacacaactc 46213153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 34616705 - 34616747
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    ||||||||||| ||| || ||||||||||||||||||||||||    
T  34616705 aaaagttgtcatataaatagatgttcaaataacacaactctta 34616747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 56363972 - 56363930
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    |||||||||||  || |||||||||||||||||||||||||||    
T  56363972 aaaagttgtcatgtaaatggatgttcaaataacacaactctta 56363930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 2575717 - 2575676
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||| ||| || |||||||||||||||||||||||    
T  2575717 aaaagttgtcatataaatagatgttcaaataacacaactctt 2575676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 25123215 - 25123178
Alignment:
Q  14 aaaaagttgtcacatatatggatgttcaaataacacaa 51  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  25123215 aaaaagttgttacatatatgaatgttcaaataacacaa 25123178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 31641492 - 31641451
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||| |||| |||||| ||||||||||||||||||||||    
T  31641492 aaaagttatcacgtatatgaatgttcaaataacacaactctt 31641451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 5622602 - 5622642
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    ||||||||| |||||||| ||| ||||||||||||||||||    
T  5622602 aaaagttgtgacatatatagatcttcaaataacacaactct 5622642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 27051013 - 27050973
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    |||||||||||||| |||| |||||||||||||||| ||||    
T  27051013 aaaagttgtcacatttatgaatgttcaaataacacatctct 27050973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 29531541 - 29531505
Alignment:
Q  19 gttgtcacatatatggatgttcaaataacacaactct 55  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  29531541 gttgtcacatgtatggatgttcaaataatacaactct 29531505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 36178050 - 36178090
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    ||||||| ||||||||||  |||||||||||||||||||||    
T  36178050 aaaagttatcacatatataaatgttcaaataacacaactct 36178090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 210 - 299
Target Start/End: Original strand, 17779548 - 17779636
Alignment:
Q  210 tcttggtacctgatgtgaaaataaataagccaactataagtcaatcataagcttgtataatcaggtaacaattactctttactctttacc 299  Q
    |||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| |||||| ||||||||    
T  17779548 tcttggtacctgatgtgagaataagtaagccaactataagtcaattataagcttgtataatcaggtaac-attagtctttattctttacc 17779636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 17779343 - 17779416
Alignment:
Q  67 gtttggtgggatttgaattctagatggaaactgggaagctacatgacgagcttctttagttaggcatacatctt 140  Q
    ||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| |||||||||||||||    
T  17779343 gtttggtgggatttgaattctagatgggaactgggaagctacataatgagcttctttaattaggcatacatctt 17779416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 27464984 - 27464940
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactcttacc 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  27464984 aaaagttgtcacatatatggatgttcaaataacacaactcttacc 27464940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 31088325 - 31088367
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  31088325 aaaagttgtcacatatatggatgttcaaataacacaactctta 31088367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 45121408 - 45121366
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  45121408 aaaagttgtcacatatatggatgttcaaataacacaactctta 45121366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 19055686 - 19055645
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  19055686 aaaagttgtcacatatatggatgttcaaataacacaactctt 19055645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 8350125 - 8350078
Alignment:
Q  16 aaagttgtcacatatatggatgttcaaataacacaactcttacctaaa 63  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||    
T  8350125 aaagttgtcacatatatggatgttcaaataacacaactcataactaaa 8350078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 26469503 - 26469542
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26469503 aaaagttgtcacatatatggatgttcaaataacacaactc 26469542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 48470783 - 48470822
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48470783 aaaagttgtcacatatatggatgttcaaataacacaactc 48470822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 41677260 - 41677222
Alignment:
Q  18 agttgtcacatatatggatgttcaaataacacaactctt 56  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41677260 agttgtcacatatatggatgttcaaataacacaactctt 41677222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 649913 - 649954
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  649913 aaaagttgtcacatatgtggatgttcaaataacacaactctt 649954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 21401542 - 21401583
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  21401542 aaaagttgtcacataaatggatgttcaaataacacaactctt 21401583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 44914500 - 44914459
Alignment:
Q  13 caaaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  44914500 caaaaaattgtcacatatatggatgttcaaataacacaactc 44914459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 45640445 - 45640486
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  45640445 aaaagttgtcacatatatagatgttcaaataacacaactctt 45640486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 33100952 - 33100992
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  33100952 aaaagttgtcacatatatgaatgttcaaataacacaactct 33100992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 35369844 - 35369879
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacaca 50  Q
    ||||||||||||||||||||||||||||||||||||    
T  35369844 aaaagttgtcacatatatggatgttcaaataacaca 35369879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 37619688 - 37619727
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  37619688 aaaagttgtcacatatatggatgttcaaataacataactc 37619727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 44519078 - 44519039
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  44519078 aaaagttgtcacatatatgaatgttcaaataacacaactc 44519039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 3851302 - 3851335
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataaca 48  Q
    ||||||||||||||||||||||||||||||||||    
T  3851302 aaaagttgtcacatatatggatgttcaaataaca 3851335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 37274960 - 37274919
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  37274960 aaaagttgtcacatgtaaggatgttcaaataacacaactctt 37274919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 50932448 - 50932481
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataaca 48  Q
    ||||||||||||||||||||||||||||||||||    
T  50932448 aaaagttgtcacatatatggatgttcaaataaca 50932481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 3981949 - 3981914
Alignment:
Q  19 gttgtcacatatatggatgttcaaataacacaactc 54  Q
    |||||||||| |||||||||||||||||||||||||    
T  3981949 gttgtcacatttatggatgttcaaataacacaactc 3981914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 54
Target Start/End: Complemental strand, 50726167 - 50726136
Alignment:
Q  23 tcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||||||||||||||||||||||    
T  50726167 tcacatatatggatgttcaaataacacaactc 50726136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 29359773 - 29359811
Alignment:
Q  19 gttgtcacatatatggatgttcaaataacacaactctta 57  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  29359773 gttgtcatatatatgaatgttcaaataacacaactctta 29359811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 46907339 - 46907381
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    ||||||||||  ||| |||||||||||||||||||||||||||    
T  46907339 aaaagttgtcgtataaatggatgttcaaataacacaactctta 46907381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 23645555 - 23645596
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||| ||||||||| |||||||||||||| |||||||    
T  23645555 aaaagttgttacatatatgtatgttcaaataacataactctt 23645596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 43775350 - 43775391
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||||||| || |||||||||||||| ||||    
T  43775350 aaaagttgtcacatatatgaatattcaaataacacaagtctt 43775391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 50333352 - 50333393
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||||||||||| | ||||||||||| ||||    
T  50333352 aaaagttgtcacatatatggatggttaaataacacaattctt 50333393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 12657359 - 12657391
Alignment:
Q  19 gttgtcacatatatggatgttcaaataacacaa 51  Q
    ||||||||||||||||||||| |||||||||||    
T  12657359 gttgtcacatatatggatgttgaaataacacaa 12657391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 1671686 - 1671730
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactcttacc 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  1671686 aaaagttgtcacatatatggatgttcaaataacacaactcttacc 1671730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 1274501 - 1274543
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1274501 aaaagttgtcacatatatggatgttcaaataacacaactctta 1274543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 26791171 - 26791129
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  26791171 aaaagttgtcacatatatggatgttcaaataacacaactctta 26791129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 18258720 - 18258679
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  18258720 aaaagttgtcacatatatggatgttcaaataacacaactctt 18258679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 35634762 - 35634722
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35634762 aaaagttgtcacatatatggatgttcaaataacacaactct 35634722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 28306059 - 28306020
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  28306059 aaaagttgtcacatatatggatgttcaaataacacaactc 28306020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 33037664 - 33037703
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33037664 aaaagttgtcacatatatggatgttcaaataacacaactc 33037703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 7287116 - 7287077
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  7287116 aaaagttgtcacatatatgaatgttcaaataacacaactc 7287077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 15479613 - 15479652
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  15479613 aaaagttgtcacatttatggatgttcaaataacacaactc 15479652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 1764368 - 1764406
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaact 53  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  1764368 aaaagttgtcacatatatgaatgttcaaataacacaact 1764406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 14923218 - 14923256
Alignment:
Q  16 aaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  14923218 aaagttgtcacatatatcgatgttcaaataacacaactc 14923256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 17626130 - 17626172
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    ||||||||||| ||| |||||||||||||||||||||||||||    
T  17626130 aaaagttgtcatataaatggatgttcaaataacacaactctta 17626172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 35646518 - 35646556
Alignment:
Q  18 agttgtcacatatatggatgttcaaataacacaactctt 56  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  35646518 agttgtcacatatatggatgtttaaataacacaactctt 35646556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 36739100 - 36739134
Alignment:
Q  23 tcacatatatggatgttcaaataacacaactctta 57  Q
    |||||||||||||||||||||||||||||||||||    
T  36739100 tcacatatatggatgttcaaataacacaactctta 36739134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 8687035 - 8687076
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||||||| ||||||||||||||| ||||||    
T  8687035 aaaagttgtcacatatatgaatgttcaaataacactactctt 8687076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 5168327 - 5168367
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    ||||||||||| ||||||| |||||||||||||||||||||    
T  5168327 aaaagttgtcatatatatgaatgttcaaataacacaactct 5168367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 41321399 - 41321438
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  41321399 aaaaattgtcacatatatggatattcaaataacacaactc 41321438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 13168666 - 13168704
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaact 53  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  13168666 aaaagttgtcacatatatgaatgttgaaataacacaact 13168704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 42175063 - 42175101
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaact 53  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  42175063 aaaagttgacacatatatcgatgttcaaataacacaact 42175101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 7552894 - 7552853
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    |||||||||||  || ||||||||||||||||||||||||||    
T  7552894 aaaagttgtcatctaaatggatgttcaaataacacaactctt 7552853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 22972261 - 22972302
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||| | ||| ||||||||||||||||||||||||||    
T  22972261 aaaagttgttatataaatggatgttcaaataacacaactctt 22972302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 28467380 - 28467339
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    |||| |||||||||||||| ||||||| ||||||||||||||    
T  28467380 aaaaattgtcacatatatgaatgttcagataacacaactctt 28467339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 2972468 - 2972504
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaa 51  Q
    ||||||||||||||||||  |||||||||||||||||    
T  2972468 aaaagttgtcacatatataaatgttcaaataacacaa 2972504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 14051242 - 14051202
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    ||||||| |||||||||||||||||  ||||||||||||||    
T  14051242 aaaagttatcacatatatggatgtttgaataacacaactct 14051202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 1248830 - 1248872
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1248830 aaaagttgtcacatatatggatgttcaaataacacaactctta 1248872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 18254136 - 18254095
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  18254136 aaaagttgtcacatatatggatgttcaaataacacaactctt 18254095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 21611582 - 21611541
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  21611582 aaaagttgtcacatatatggatgttcaaataacacaactctt 21611541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 22888744 - 22888703
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22888744 aaaagttgtcacatatatggatgttcaaataacacaactctt 22888703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 43487523 - 43487565
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  43487523 aaaaattgtcacatatatggatgttcaaataacacaactctta 43487565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 9760162 - 9760203
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  9760162 aaaagttgtcacatatatagatgttcaaataacacaactctt 9760203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 9990835 - 9990876
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  9990835 aaaagttatcacatatatggatgttcaaataacacaactctt 9990876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 22416349 - 22416386
Alignment:
Q  19 gttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22416349 gttgtcacatatatggatgttcaaataacacaactctt 22416386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 32477476 - 32477517
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  32477476 aaaagttgtcacatatatgaatgttcaaataacacaactctt 32477517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 42421825 - 42421784
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  42421825 aaaagttgtcacatatatgaatgttcaaataacacaactctt 42421784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 6049272 - 6049236
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaa 51  Q
    |||||||||||||||||||||||||||||||||||||    
T  6049272 aaaagttgtcacatatatggatgttcaaataacacaa 6049236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 37737898 - 37737858
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  37737898 aaaagttgtcacatatatggacgttcaaataacacaactct 37737858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 3838807 - 3838768
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  3838807 aaaagttgtcacatatatagatgttcaaataacacaactc 3838768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 2076713 - 2076755
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    |||||||||||||| ||| ||||||||||||||||||||||||    
T  2076713 aaaagttgtcacatctattgatgttcaaataacacaactctta 2076755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 3097788 - 3097746
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    ||||||||||| ||| |||||||||||||||||||||||||||    
T  3097788 aaaagttgtcatataaatggatgttcaaataacacaactctta 3097746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 25270508 - 25270467
Alignment:
Q  16 aaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    |||||||||| ||| |||||||||||||||||||||||||||    
T  25270508 aaagttgtcatataaatggatgttcaaataacacaactctta 25270467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 41042398 - 41042439
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  41042398 aaaaattgtcacatatatggatgttcaaataacagaactctt 41042439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 41195728 - 41195768
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    ||||||||| ||||||||| |||||||||||||||||||||    
T  41195728 aaaagttgttacatatatgaatgttcaaataacacaactct 41195768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 13333097 - 13333055
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    ||||||||||| ||| || ||||||||||||||||||||||||    
T  13333097 aaaagttgtcatataaatcgatgttcaaataacacaactctta 13333055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 17388537 - 17388503
Alignment:
Q  20 ttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||| |||||||||||||||||||||    
T  17388537 ttgtcacatatatagatgttcaaataacacaactc 17388503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 41056674 - 41056636
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaact 53  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  41056674 aaaagttgtcatataaatggatgttcaaataacacaact 41056636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 9194385 - 9194426
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    |||| |||| ||||||||| ||||||||||||||||||||||    
T  9194385 aaaaattgttacatatatgaatgttcaaataacacaactctt 9194426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 9647276 - 9647317
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||| || |||||||| ||||||||||||||||||||||    
T  9647276 aaaagttatcgcatatatgaatgttcaaataacacaactctt 9647317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 27325903 - 27325944
Alignment:
Q  16 aaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27325903 aaagttgtcacatatatggatgttcaaataacacaactctta 27325944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 31249459 - 31249421
Alignment:
Q  19 gttgtcacatatatggatgttcaaataacacaactctta 57  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31249459 gttgtcacatatatggatgttcaaataacacaactctta 31249421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 12898856 - 12898815
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  12898856 aaaagttgtcacatatatggatgttcaaataacataactctt 12898815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 34186751 - 34186791
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  34186751 aaaagttgtcacatgtatggatgttcaaataacacaactct 34186791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 22719584 - 22719623
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  22719584 aaaagttgtcacatatatggctgttcaaataacacaactc 22719623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 37449352 - 37449311
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||| |||||||||||||| |||||||||||||||||||    
T  37449352 aaaagttatcacatatatggatattcaaataacacaactctt 37449311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 36816543 - 36816507
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaa 51  Q
    |||||||||||||||||| ||||||||||||||||||    
T  36816543 aaaagttgtcacatatatagatgttcaaataacacaa 36816507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 4054213 - 4054174
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  4054213 aaaagttgtcacatatataaatgttcaaataacacaactc 4054174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 7271994 - 7272033
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  7271994 aaaagttgtcacatgtatggatgttcatataacacaactc 7272033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 54
Target Start/End: Original strand, 42768356 - 42768387
Alignment:
Q  23 tcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||||||||||||||||||||||    
T  42768356 tcacatatatggatgttcaaataacacaactc 42768387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 10692577 - 10692615
Alignment:
Q  17 aagttgtcacatatatggatgttcaaataacacaactct 55  Q
    |||||| ||||||||||||||||||||||| ||||||||    
T  10692577 aagttgacacatatatggatgttcaaataatacaactct 10692615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 36660377 - 36660339
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaact 53  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  36660377 aaaagttatcacatttatggatgttcaaataacacaact 36660339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 13106624 - 13106665
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    |||||||||||| || |||| |||||||||||||||||||||    
T  13106624 aaaagttgtcacctaaatggttgttcaaataacacaactctt 13106665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 29025404 - 29025444
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    ||||||||||| ||| ||||||||| |||||||||||||||    
T  29025404 aaaagttgtcatataaatggatgtttaaataacacaactct 29025444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 32501115 - 32501087
Alignment:
Q  23 tcacatatatggatgttcaaataacacaa 51  Q
    |||||||||||||||||||||||||||||    
T  32501115 tcacatatatggatgttcaaataacacaa 32501087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 36251471 - 36251503
Alignment:
Q  16 aaagttgtcacatatatggatgttcaaataaca 48  Q
    |||||| ||||||||||||||||||||||||||    
T  36251471 aaagttatcacatatatggatgttcaaataaca 36251503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 27541429 - 27541388
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27541429 aaaagttgtcacatatatggatgttcaaataacacaactctt 27541388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 33939382 - 33939423
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33939382 aaaagttgtcacatatatggatgttcaaataacacaactctt 33939423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 16969493 - 16969449
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactcttacc 59  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  16969493 aaaagttgtcacatatatggatgttcaaataacacaactcatacc 16969449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 13735874 - 13735913
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13735874 aaaagttgtcacatatatggatgttcaaataacacaactc 13735913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 32924208 - 32924169
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32924208 aaaagttgtcacatatatggatgttcaaataacacaactc 32924169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 44856099 - 44856138
Alignment:
Q  17 aagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44856099 aagttgtcacatatatggatgttcaaataacacaactctt 44856138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 52939796 - 52939835
Alignment:
Q  16 aaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  52939796 aaagttgtcacatatatggatgttcaaataacacaactct 52939835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 52326163 - 52326205
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  52326163 aaaagttgtcatatatatggatgttcaaataacacaactctta 52326205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 38926773 - 38926813
Alignment:
Q  16 aaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  38926773 aaagttgtcacatatatagatgttcaaataacacaactctt 38926813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 42358565 - 42358529
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaa 51  Q
    |||||||||||||||||||||||||||||||||||||    
T  42358565 aaaagttgtcacatatatggatgttcaaataacacaa 42358529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 7934118 - 7934157
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  7934118 aaaaattgtcacatatatggatgttcaaataacacaactc 7934157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 19149134 - 19149173
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  19149134 aaaaattgtcacatatatggatgttcaaataacacaactc 19149173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 31157602 - 31157563
Alignment:
Q  17 aagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  31157602 aagttatcacatatatggatgttcaaataacacaactctt 31157563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 36670941 - 36670902
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  36670941 aaaagttatcacatatatggatgttcaaataacacaactc 36670902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 41505627 - 41505662
Alignment:
Q  19 gttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||||||||||||||||||||||||||    
T  41505627 gttgtcacatatatggatgttcaaataacacaactc 41505662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 42357011 - 42356972
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  42357011 aaaaattgtcacatatatggatgttcaaataacacaactc 42356972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 44413322 - 44413283
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  44413322 aaaagttgtcacatatatagatgttcaaataacacaactc 44413283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 21217656 - 21217698
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    ||||||||||| ||| |||||||||||||||||||||||||||    
T  21217656 aaaagttgtcatataaatggatgttcaaataacacaactctta 21217698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 37056984 - 37056942
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    ||||||||||| ||| |||||||||||||||||||||||||||    
T  37056984 aaaagttgtcatataaatggatgttcaaataacacaactctta 37056942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 44383333 - 44383375
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    ||||||||||| ||| |||||||||||||||||||||||||||    
T  44383333 aaaagttgtcatataaatggatgttcaaataacacaactctta 44383375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 44813280 - 44813322
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  44813280 aaaagttgtcacatatatagatgttcaaatcacacaactctta 44813322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 46624051 - 46624093
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    ||||||| |||||| ||||||||||||||||||||||||||||    
T  46624051 aaaagttatcacatgtatggatgttcaaataacacaactctta 46624093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 7668115 - 7668074
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    |||||||||||||| |||||||||||||||||||||| ||||    
T  7668115 aaaagttgtcacatgtatggatgttcaaataacacaattctt 7668074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 288873 - 288909
Alignment:
Q  18 agttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||||||||| |||||||||||||||||    
T  288873 agttgtcacatatatggattttcaaataacacaactc 288909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 41309261 - 41309301
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  41309261 aaaagttatcgcatatatggatgttcaaataacacaactct 41309301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 52254065 - 52254025
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    |||| ||||||||||||||||||||||||| ||||||||||    
T  52254065 aaaaattgtcacatatatggatgttcaaatgacacaactct 52254025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 55151644 - 55151604
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  55151644 aaaagttgtcacatatataaatgttcaaataacacaactct 55151604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 47472473 - 47472512
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    |||||||||||||||||| ||||||||||||||| |||||    
T  47472473 aaaagttgtcacatatatagatgttcaaataacataactc 47472512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 23592602 - 23592640
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaact 53  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  23592602 aaaagttgtcatataaatggatgttcaaataacacaact 23592640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 23600737 - 23600775
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaact 53  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  23600737 aaaagttgtcatataaatggatgttcaaataacacaact 23600775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 24256698 - 24256660
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaact 53  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  24256698 aaaagttgtcacatatatagattttcaaataacacaact 24256660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 35377008 - 35376966
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    |||||||||||  || |||||||||||||||||||||||||||    
T  35377008 aaaagttgtcatctaaatggatgttcaaataacacaactctta 35376966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 35597306 - 35597344
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaact 53  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  35597306 aaaagttgtcacatatatgaatattcaaataacacaact 35597344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 5114222 - 5114263
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    |||| |||||||||| || |||||||||||||||||||||||    
T  5114222 aaaaattgtcacataaatagatgttcaaataacacaactctt 5114263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 13348061 - 13348020
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||| ||| |||||||||||||||||| |||||||    
T  13348061 aaaagttgtcatataaatggatgttcaaataacataactctt 13348020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 25641510 - 25641469
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||| ||| |||||||||||||||| |||||||||    
T  25641510 aaaagttgtcatataaatggatgttcaaataatacaactctt 25641469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 33791705 - 33791668
Alignment:
Q  19 gttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  33791705 gttgtcatataaatggatgttcaaataacacaactctt 33791668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 37302690 - 37302731
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||| || ||||||||||||||||| |||||||||    
T  37302690 aaaagttgtcaaatgtatggatgttcaaataagacaactctt 37302731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 56
Target Start/End: Original strand, 42478115 - 42478144
Alignment:
Q  27 atatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||||||||||||||||||    
T  42478115 atatatggatgttcaaataacacaactctt 42478144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 44445438 - 44445479
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||| |||||||| ||||||||||||||| |||||||    
T  44445438 aaaagttgttacatatatcgatgttcaaataacataactctt 44445479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 56
Target Start/End: Original strand, 45000201 - 45000230
Alignment:
Q  27 atatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||||||||||||||||||    
T  45000201 atatatggatgttcaaataacacaactctt 45000230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 8847254 - 8847289
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaa 51  Q
    ||||||||| |||||||||||||||||||||||||||    
T  8847254 aaaagttgt-acatatatggatgttcaaataacacaa 8847289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 32316855 - 32316815
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  32316855 aaaagttgtcacatatatggatgttcaaataacacaactct 32316815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 552937 - 552976
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  552937 aaaagttgtcacatatatggatgttcaaataacacaactc 552976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 15974752 - 15974793
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  15974752 aaaagttgttacatatatggatgttcaaataacacaactctt 15974793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 13689921 - 13689882
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  13689921 aaaaattgtcacatatatggatgttcaaataacacaactc 13689882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 16199594 - 16199636
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    ||||||||||| ||| |||||||||||||||||||||||||||    
T  16199594 aaaagttgtcatataaatggatgttcaaataacacaactctta 16199636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 26595493 - 26595534
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  26595493 aaaagttgtcatataaatggatgttcaaataacacaactctt 26595534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 33430289 - 33430248
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||||||| |||| |||||||||||||||||    
T  33430289 aaaagttgtcacatatatgaatgtccaaataacacaactctt 33430248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 34047531 - 34047572
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    |||||||||||||| ||||||||||||||||||| |||||||    
T  34047531 aaaagttgtcacatttatggatgttcaaataacaaaactctt 34047572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 1156864 - 1156904
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    ||||||| ||| |||||||||||||||||||||||||||||    
T  1156864 aaaagttatcaaatatatggatgttcaaataacacaactct 1156904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 8098532 - 8098496
Alignment:
Q  19 gttgtcacatatatggatgttcaaataacacaactct 55  Q
    ||||||||||||||| |||||||||||||||||||||    
T  8098532 gttgtcacatatatgaatgttcaaataacacaactct 8098496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 54
Target Start/End: Complemental strand, 5080498 - 5080467
Alignment:
Q  23 tcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||||||||||||||||||||||    
T  5080498 tcacatatatggatgttcaaataacacaactc 5080467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 18737494 - 18737460
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacac 49  Q
    ||||||||||||||| |||||||||||||||||||    
T  18737494 aaaagttgtcacatacatggatgttcaaataacac 18737460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 38956545 - 38956506
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  38956545 aaaagttgtcacatatatggatgttcaaataacacaactc 38956506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 3937050 - 3937009
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  3937050 aaaagttgtcacatgtatggatgttcaaataacacaactctt 3937009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 38073356 - 38073391
Alignment:
Q  19 gttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||||||||||||||||||||||||||    
T  38073356 gttgtcacatatatggatgttcaaataacacaactc 38073391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 41989667 - 41989628
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  41989667 aaaagttatcacatatatggatgttcaaataacacaactc 41989628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 7701688 - 7701730
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    ||||||||||| ||| |||||||||||||||||||||||||||    
T  7701688 aaaagttgtcatataaatggatgttcaaataacacaactctta 7701730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 40112879 - 40112841
Alignment:
Q  17 aagttgtcacatatatggatgttcaaataacacaactct 55  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  40112879 aagttgttacatatatggatgttcaaataacacaactct 40112841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 46022194 - 46022152
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctta 57  Q
    ||||||||||| ||| |||||||||||||||||||||||||||    
T  46022194 aaaagttgtcatataaatggatgttcaaataacacaactctta 46022152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 43942784 - 43942817
Alignment:
Q  23 tcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||||||||||||||||||||||    
T  43942784 tcacatatatggatgttcaaataacacaactctt 43942817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 24614243 - 24614203
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  24614243 aaaagttatcacatatatgaatgttcaaataacacaactct 24614203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 43025484 - 43025524
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    |||||||||||||||||| ||||||| ||||||||||||||    
T  43025484 aaaagttgtcacatatatagatgttcgaataacacaactct 43025524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 44895499 - 44895460
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  44895499 aaaagttgttacatatatggatgttcaaataacataactc 44895460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 32529783 - 32529745
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaact 53  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  32529783 aaaaattgtcacatatatggatgctcaaataacacaact 32529745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 25192844 - 25192803
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    |||||||||||||| |||| || |||||||||||||||||||    
T  25192844 aaaagttgtcacatgtatgaatattcaaataacacaactctt 25192803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 32803833 - 32803870
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaac 52  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  32803833 aaaagttgtcatataaatggatgttcaaataacacaac 32803870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 3614373 - 3614333
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    ||||||||||| ||| |||||||||||||||||| ||||||    
T  3614373 aaaagttgtcatataaatggatgttcaaataacataactct 3614333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 35072289 - 35072249
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    ||||||||||| ||| ||||||||||| |||||||||||||    
T  35072289 aaaagttgtcatataaatggatgttcagataacacaactct 35072249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 35098630 - 35098590
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    ||||||||||| ||| |||||| ||||||||||||||||||    
T  35098630 aaaagttgtcatataaatggatattcaaataacacaactct 35098590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 45851135 - 45851095
Alignment:
Q  14 aaaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||| |||| ||| ||||||||||||||||||||||||||    
T  45851135 aaaaaattgtgacagatatggatgttcaaataacacaactc 45851095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 8812 - 8853
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  8812 aaaagttgtcagatatatggatgttcaaataacacaactctt 8853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 76546 - 76505
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactctt 56  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  76546 aaaagttgtcacatatatggatgttaaaataacacaactctt 76505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 49439 - 49478
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactc 54  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  49439 aaaagttgtcacatatatggatgttcaaataacataactc 49478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 35660 - 35694
Alignment:
Q  20 ttgtcacatatatggatgttcaaataacacaactc 54  Q
    ||||||||||||||||| |||||||||||||||||    
T  35660 ttgtcacatatatggatattcaaataacacaactc 35694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 16716 - 16676
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    ||||||||||| ||| |||||||||||||||||| ||||||    
T  16716 aaaagttgtcatataaatggatgttcaaataacagaactct 16676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 56128 - 56168
Alignment:
Q  15 aaaagttgtcacatatatggatgttcaaataacacaactct 55  Q
    ||||||||||| ||| |||||||||||||||||| ||||||    
T  56128 aaaagttgtcatataaatggatgttcaaataacagaactct 56168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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