View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8413_low_15 (Length: 259)
Name: NF8413_low_15
Description: NF8413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8413_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 4330708 - 4330951
Alignment:
| Q |
1 |
aaatggattcagctagcaattgagttataatcagcttgttactcagatagttacttacgtgctcctataaataagcttgtatctgttcagttttgcatct |
100 |
Q |
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| T |
4330708 |
aaatggattcagctagcaattgagttataatcagcttgttactcagatagttacttacgtgctcctataaataagcttgtatctgttcagttttgcatct |
4330807 |
T |
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| Q |
101 |
ttgaatatgatgataccttagagtattcctcgtcatcaagctctcaagctttctttctctgcc--ctcatcatctgtaaaaattaaaatacacaactccg |
198 |
Q |
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| T |
4330808 |
ttgaatatgatgataccttagagtattcctcgtcatcaagctctcaagctttctttctctgccctctcatcatctgtaaaaattaaaatacacaactctg |
4330907 |
T |
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| Q |
199 |
tgtagtcctctgtctgtttttatatccactttctgaattttgat |
242 |
Q |
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| T |
4330908 |
tgtagtcctctgtctgtttttatatccactttctgaattttgat |
4330951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 159
Target Start/End: Original strand, 4338878 - 4338978
Alignment:
| Q |
60 |
tgctcctataaataagcttgtatctgttcagttttgcatctttgaat-atgatgata-ccttagagtattcctcgtcatcaagctctcaagctttctttc |
157 |
Q |
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| T |
4338878 |
tgctcctataaataagctt-tatctgttcaattttgtatctttgaatcataatgacacccttctagtatttttcatctttaagctctcaagctttctttc |
4338976 |
T |
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| Q |
158 |
tc |
159 |
Q |
| |
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|| |
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| T |
4338977 |
tc |
4338978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 4364810 - 4364903
Alignment:
| Q |
60 |
tgctcctataaataagcttgtatctgttcag-ttttgcatctttgaat-atgatgata-ccttagagtattcctcgtcatcaagctctcaagct |
150 |
Q |
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| T |
4364810 |
tgctcctataagtaagcttgtatatgttcagtttttgtatctttgaatcataatgatatccttttagtatttttcatcgtcaagctctcaagct |
4364903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 4130806 - 4130762
Alignment:
| Q |
62 |
ctcctataaataagcttgtatct-gttcagttttgcatctttgaa |
105 |
Q |
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| T |
4130806 |
ctcctataaataagcttgtatctctttcagttttgtatctttgaa |
4130762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 17779856 - 17779780
Alignment:
| Q |
98 |
tctttgaat-atgatgataccttagagtattcctcgtcatcaagctctcaagctttctttctctgccctcatcatct |
173 |
Q |
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||||||||| || |||||||||| ||||||||||| |||||||| ||||||||||||||||||| |||||||||||| |
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| T |
17779856 |
tctttgaatcataatgataccttcgagtattcctcatcatcaagttctcaagctttctttctcttccctcatcatct |
17779780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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