View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8413_low_17 (Length: 253)
Name: NF8413_low_17
Description: NF8413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8413_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 41 - 242
Target Start/End: Original strand, 10011145 - 10011346
Alignment:
| Q |
41 |
atggaagaaagaccaatcgaacctatgnnnnnnntatagaagagaggtgctcctgttttggagaattggacatnnnnnnntttcgttaaaaattatcttt |
140 |
Q |
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| T |
10011145 |
atggaagaaagaccaatcgaacctatgaaaaaaatatagaagagaggtgctcctgttttggagaattggacataaaaaattttccttaaaaattgtcttt |
10011244 |
T |
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| Q |
141 |
ttgttctatattctttctcgtttctgaagcaaaagcgnnnnnnnnnnnnnnnnnnncgaagggagacataaatgatttagaagagttggacatcaaattc |
240 |
Q |
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| T |
10011245 |
ttgttctatattctttctcgtttctgaagcagaagagttatttttctttcctttttcgaagggagacataaatgatttagaagagttggacatcaaattc |
10011344 |
T |
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| Q |
241 |
at |
242 |
Q |
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|| |
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| T |
10011345 |
at |
10011346 |
T |
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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 561565 - 561652
Alignment:
| Q |
80 |
aagagaggtgctcctgttttggagaattggacatnnnnnnntttcgttaaaaattatctttttgttctatattctttctcgtttctga |
167 |
Q |
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|||||||||| ||||||||||||||||||||||| |||| || |||||| || |||| |||||||||||||||||||||||| |
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| T |
561565 |
aagagaggtgttcctgttttggagaattggacatcaaattttttccttcaaaattgtccttttcttctatattctttctcgtttctga |
561652 |
T |
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