View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8413_low_19 (Length: 214)
Name: NF8413_low_19
Description: NF8413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8413_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 3961281 - 3961460
Alignment:
| Q |
18 |
gaagtttcaacatataggagcaagagtataatctcattcctaacatatccagagcatcaattaggtataatattaattcatggtcagtaatttacttaca |
117 |
Q |
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| T |
3961281 |
gaagtttcaacatataggaacaagagtataatctcattcctaacatatccagagcatcaattaggtataatattaattcatggtcagtaatttacttgca |
3961380 |
T |
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| Q |
118 |
aataaaagaagaatgaatggttaaagatcaagttgagaaatagctttttaaggtacttgtttgtacacactgttcattat |
197 |
Q |
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| T |
3961381 |
aataaaagaagaatgaatggttaaagatcaagttgagaaatagctttctaaggtacttgtttgtaaacactgttcattat |
3961460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 3806508 - 3806474
Alignment:
| Q |
17 |
tgaagtttcaacatataggagcaagagtataatct |
51 |
Q |
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| T |
3806508 |
tgaagtttcaacatataggagaaagagtataatct |
3806474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 3813151 - 3813117
Alignment:
| Q |
17 |
tgaagtttcaacatataggagcaagagtataatct |
51 |
Q |
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| T |
3813151 |
tgaagtttcaacatataggagaaagagtataatct |
3813117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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