View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8413_low_3 (Length: 522)
Name: NF8413_low_3
Description: NF8413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8413_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 11 - 500
Target Start/End: Complemental strand, 41043395 - 41042906
Alignment:
| Q |
11 |
gtgagaagaacattaaaaagcaaatgccaaagggnnnnnnnttaaacactcatagccaaattttaaggtatgcttatggtcaaattgagaaggagaaagc |
110 |
Q |
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| T |
41043395 |
gtgacaagaacattaaaaagcaaatgccaaagggaaaaaaattaaacactcatagccaaattttaaggtatgcttatggtcaaattgagaaggagaaagc |
41043296 |
T |
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| Q |
111 |
tcagcaagaacaaaacaagaacttgacattctcaggattaatttcaatggctggtgaaggtgaggaagtaaacacaagacctcctattgaggtagctttc |
210 |
Q |
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| T |
41043295 |
tcagcaagaacaaaacaagaacttgacattctcaggattaatttcgatggctggtgaaggtgaggaagtaaacacaagacctcctattgaggtagctttc |
41043196 |
T |
|
| Q |
211 |
aataatctaaccctgacattgaagggtaaaaacaaacatatactgaggtgtgtgagtggtaaaatcatgcctggtcgagtttctgctgttatgggaccct |
310 |
Q |
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| T |
41043195 |
aataatctaaccctgacattgaagggtaaaaacaaacatatactgaggtgtgtgagtggtaaaatcatgcctggtcgagtttctgctgttatgggaccct |
41043096 |
T |
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| Q |
311 |
caggagctggaaaaaccacatttctttcagctttggctggaaaagcaagaggatgcactatgtcaggctcaattctagttaatggaaaaaatgaatccat |
410 |
Q |
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| T |
41043095 |
caggagctggaaaaaccacatttctttcagctttggctggaaaagcaagaggatgcactatgtcaggctcaattctagttaatggaaaaaatgaatccat |
41042996 |
T |
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| Q |
411 |
tcactcttataagaaaattactggttttgtgccacaggatgatattgtacatggaaacttgacagtagaggaaaatctccgttttagcgc |
500 |
Q |
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| T |
41042995 |
tcactcttataagaaaattactggttttgtgccacaggatgatattgtacatggaaacttgacagtagaggaaaatctccgttttagcgc |
41042906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 22 - 494
Target Start/End: Original strand, 28087039 - 28087514
Alignment:
| Q |
22 |
attaaaaagcaaatgccaaagggnnnnnnnttaaacactcatagccaaattttaaggtatgcttatggtcaaattgagaaggagaaagctcagcaagaac |
121 |
Q |
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| T |
28087039 |
attaaaaagcaaatgccaaagggaaaaaatttacatacgcaaagtcaaattttaagatatgcttatggtcagattgagaaggagaaagctcaacaagaga |
28087138 |
T |
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| Q |
122 |
aaaacaagaacttgacattctcaggattaatttcaatggctggtgaaggtgaggaag---taaacacaagacctcctattgaggtagctttcaataatct |
218 |
Q |
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| T |
28087139 |
aaaacaataacttgaccttctcaggagtgatttcaatggcttctgaagttgaggaggatattaaatcgaggcctgagatcgaggtagctttcaaagatgt |
28087238 |
T |
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| Q |
219 |
aaccctgacattgaagggtaaaaacaaacatatactgaggtgtgtgagtggtaaaatcatgcctggtcgagtttctgctgttatgggaccctcaggagct |
318 |
Q |
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| T |
28087239 |
aacccttactttgaaagggaaaagaaaacatatactgaggtgtgtgacaggtaaaatcatgcccggtcgagtttcagctgtgatgggtccctcgggagct |
28087338 |
T |
|
| Q |
319 |
ggaaaaaccacatttctttcagctttggctggaaaagcaagaggatgcactatgtcaggctcaattctagttaatggaaaaaatgaatccattcactctt |
418 |
Q |
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| T |
28087339 |
ggcaaaactacatttctttctgccctggcagggaaaataagaggatgcactatgacaggctcaatttttgtcaatggaagacctgaatccattcactgtt |
28087438 |
T |
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| Q |
419 |
ataagaaaattactggttttgtgccacaggatgatattgtacatggaaacttgacagtagaggaaaatctccgttt |
494 |
Q |
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| T |
28087439 |
atcagaaaattgttggatatgtgccacaagatgatattgtgcatgggaacttgacggtggaggaaaatcttcgttt |
28087514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 473
Target Start/End: Original strand, 42553760 - 42553932
Alignment:
| Q |
301 |
atgggaccctcaggagctggaaaaaccacatttctttcagctttggctggaaaagcaagaggatgcactatgtcaggctcaattctagttaatggaaaaa |
400 |
Q |
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| T |
42553760 |
atgggcccgtcaggggctggcaagacaacatttctttcagctctagctggaaaagcacttggatgcttggttactggttcaattctgataaatggaagga |
42553859 |
T |
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| Q |
401 |
atgaatccattcactcttataagaaaattactggttttgtgccacaggatgatattgtacatggaaacttgac |
473 |
Q |
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| T |
42553860 |
atgaatcaattcattcctttaagaaaattattggcttcgtgccacaagatgatgtagttcatggaaacttgac |
42553932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 21492320 - 21492394
Alignment:
| Q |
283 |
ggtcgagtttctgctgttatgggaccctcaggagctggaaaaaccacatttctttcagctttggctggaaaagca |
357 |
Q |
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| T |
21492320 |
ggtcgagtttctgcagtcatgggaccatctggggctggtaagacaacatttctttctgctttaactggaaaagca |
21492394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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