View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8413_low_4 (Length: 499)

Name: NF8413_low_4
Description: NF8413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8413_low_4
NF8413_low_4
[»] chr1 (11 HSPs)
chr1 (160-481)||(5160472-5160793)
chr1 (180-480)||(5157193-5157490)
chr1 (1-122)||(5160351-5160472)
chr1 (6-97)||(30259517-30259610)
chr1 (1-72)||(49517012-49517086)
chr1 (2-72)||(40304108-40304181)
chr1 (1-72)||(2152200-2152272)
chr1 (29-72)||(4548693-4548737)
chr1 (4-72)||(33527201-33527272)
chr1 (29-72)||(37272640-37272684)
chr1 (1-68)||(44422643-44422711)
[»] chr5 (10 HSPs)
chr5 (1-72)||(26209467-26209540)
chr5 (7-69)||(14295454-14295519)
chr5 (1-72)||(32059643-32059716)
chr5 (1-72)||(16889677-16889751)
chr5 (9-68)||(28586824-28586886)
chr5 (1-72)||(18704090-18704163)
chr5 (1-72)||(1619034-1619106)
chr5 (3-47)||(38338268-38338312)
chr5 (29-72)||(41277404-41277448)
chr5 (1-72)||(42583396-42583468)
[»] chr8 (5 HSPs)
chr8 (4-72)||(6509357-6509426)
chr8 (1-72)||(11795034-11795108)
chr8 (1-73)||(9699943-9700018)
chr8 (4-72)||(9836908-9836979)
chr8 (29-69)||(34236135-34236175)
[»] chr7 (15 HSPs)
chr7 (1-72)||(5369745-5369817)
chr7 (1-63)||(35536049-35536114)
chr7 (1-79)||(49060482-49060563)
chr7 (1-57)||(45593788-45593847)
chr7 (1-72)||(5006563-5006637)
chr7 (2-72)||(39551602-39551675)
chr7 (1-70)||(5373167-5373239)
chr7 (3-72)||(9527144-9527216)
chr7 (1-70)||(28340452-28340524)
chr7 (1-58)||(31341136-31341196)
chr7 (49-78)||(47510100-47510129)
chr7 (1-69)||(6824860-6824931)
chr7 (29-72)||(29363490-29363534)
chr7 (29-72)||(31338480-31338524)
chr7 (29-72)||(44821931-44821975)
[»] chr6 (8 HSPs)
chr6 (1-72)||(33787799-33787873)
chr6 (1-67)||(33500540-33500609)
chr6 (1-72)||(6647331-6647403)
chr6 (1-72)||(10452414-10452488)
chr6 (1-72)||(29274283-29274357)
chr6 (30-74)||(5550105-5550150)
chr6 (4-72)||(4006659-4006730)
chr6 (29-72)||(10154193-10154237)
[»] chr2 (10 HSPs)
chr2 (4-97)||(1742063-1742157)
chr2 (29-74)||(3235436-3235481)
chr2 (1-70)||(5133714-5133786)
chr2 (16-68)||(7103541-7103594)
chr2 (1-72)||(29430698-29430771)
chr2 (1-100)||(10143114-10143214)
chr2 (9-71)||(37053544-37053609)
chr2 (3-72)||(17952755-17952827)
chr2 (1-72)||(29503137-29503209)
chr2 (33-72)||(37276722-37276762)
[»] chr3 (9 HSPs)
chr3 (3-72)||(24887337-24887409)
chr3 (3-72)||(28306102-28306174)
chr3 (1-47)||(51278237-51278285)
chr3 (1-72)||(22232768-22232842)
chr3 (178-220)||(45590770-45590812)
chr3 (3-72)||(38462225-38462297)
chr3 (32-71)||(2201103-2201143)
chr3 (29-72)||(31337455-31337499)
chr3 (29-72)||(41452495-41452539)
[»] chr4 (7 HSPs)
chr4 (4-63)||(21952906-21952968)
chr4 (1-72)||(35958597-35958671)
chr4 (2-72)||(49219082-49219155)
chr4 (4-72)||(32920454-32920523)
chr4 (1-70)||(54325093-54325165)
chr4 (3-40)||(55437373-55437410)
chr4 (29-72)||(18628597-18628641)


Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 160 - 481
Target Start/End: Original strand, 5160472 - 5160793
Alignment:
Q  160 gttatacgtgcccttatgtagtagataagttcaaacaagtcaactcaaacataccctaaatatgtaatgaatttaagcttacatgttgaggtggggatgg 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5160472 gttatacgtgcccttatgtagtagataagttcaaacaagtcaactcaaacataccctaaatatgtaatgaatttaagcttacatgttgaggtgggggtgg 5160571  T
Q  260 tgcatgaataaacaaaagacattaaatactgttatgatgttattttactgattaatgacaaactgatgataatttataatttatgtaactgttgattaac 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5160572 tgcatgaataaacaaaagacattaaatactgttatgatgttattttactgattaatgacaaactgatgataatttataatttatgtaactgttgattaac 5160671  T
Q  360 ttgtatttgttgattgcaggcaagaggagtttgagaaatctgcagcaggatgagctgtacgtgcacataaaaaaggaatggcaaagcaagctgcaaactc 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5160672 ttgtatttgttgattgcaggcaagaggagtttgagaaatctgcagcaggatgagctgtacgtgcacataaaaaaggaatggcaaagcaagctgcaaactc 5160771  T
Q  460 aaataacggtgaaccaactctg 481  Q
    ||||||||||||||||||||||    
T  5160772 aaataacggtgaaccaactctg 5160793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 180 - 480
Target Start/End: Original strand, 5157193 - 5157490
Alignment:
Q  180 gtagataagttcaaacaagtcaactcaaacataccctaaatatgtaatgaatttaagcttacatgttg-------aggtggggatggtgcatgaataaac 272  Q
    ||||||||||||||| |||||||  |||| | | ||||||||||||| || ||| |||||||||||||       |||||||| ||||||||||||||||    
T  5157193 gtagataagttcaaataagtcaatccaaatagatcctaaatatgtaacgagttttagcttacatgttgtctgttgaggtgggggtggtgcatgaataaac 5157292  T
Q  273 aaaagacattaaatactgttatgatgttattttactgattaatgacaaactgatgataatttataatttatgtaactgttgattaacttgtatttgttga 372  Q
    ||||| |||||||| |||||||||||||||| ||||| ||||||||||| |||||||          |||||||||| ||||||||||||||| ||||||    
T  5157293 aaaaggcattaaatgctgttatgatgttattgtactggttaatgacaaattgatgat----------ttatgtaactattgattaacttgtatgtgttga 5157382  T
Q  373 ttgcaggcaagaggagtttgagaaatctgcagcaggatgagctgtacgtgcacataaaaaaggaatggcaaagcaagctgcaaactcaaataacggtgaa 472  Q
    |||||| |||||||| ||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |||| |||    
T  5157383 ttgcagacaagaggactttgagaaatctgcagcaggacgagctgcacgtgcacatcaaaaaggaatggcaaagcaagctgcaaacgcaaatcacggcgaa 5157482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 5160351 - 5160472
Alignment:
Q  1 tgtataagctatttctataacaacatataataaagtcaaactgttttatataagttataagctgttttcatataagctaccataaagagtttatggatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5160351 tgtataagctatttctataacaacatataataaagtcaaactgttttatataagttataagctgttttcatataagctaccataaagagtttatggatat 5160450  T
Q  101 ataaagctaaacaagttaatgg 122  Q
    ||||||||||||||||||||||    
T  5160451 ataaagctaaacaagttaatgg 5160472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 30259610 - 30259517
Alignment:
Q  6 aagctatttctataacaacatat--aataaagtcaaactg-ttttatataagttataagctgttttcatataagctaccataaagagtttatgga 97  Q
    |||||||||||||||||| ||||  ||||||||||||||| ||| ||||||| |||||||||||| |||| |||||| |||  |||| |||||||    
T  30259610 aagctatttctataacaaaatataaaataaagtcaaactgctttgatataagctataagctgtttgcata-aagctatcatggagagcttatgga 30259517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 49517012 - 49517086
Alignment:
Q  1 tgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    |||||||| ||||||||||||  || ||| |||||||||||| |||||| || |||| |||||||||||||||||    
T  49517012 tgtataagttatttctataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcata 49517086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 40304181 - 40304108
Alignment:
Q  2 gtataagctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    ||||||||||||| |||||||| | ||||  |||| ||| | |||||| |||||||||||||||||||||||||    
T  40304181 gtataagctatttatataacaaaagataaaataaaatcacattgttttcatataagttataagctgttttcata 40304108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 2152200 - 2152272
Alignment:
Q  1 tgtataagctatttctataacaacatataataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    |||||||||||||||||| |||| |||   |||||| ||||| |||| |||||||||||||| || |||||||    
T  2152200 tgtataagctatttctatgacaagataatgtaaagtgaaactattttaatataagttataaggtggtttcata 2152272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 4548693 - 4548737
Alignment:
Q  29 aataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||||    
T  4548693 aataaagtcaaactgtttttatacaagtcataagctgttttcata 4548737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 33527272 - 33527201
Alignment:
Q  4 ataagctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    |||||||||||||| ||||| | ||||  || |||||||||||||| ||||||  |||||||||||||||||    
T  33527272 ataagctatttctaaaacaaaagataaaatacagtcaaactgttttcatataatctataagctgttttcata 33527201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 37272684 - 37272640
Alignment:
Q  29 aataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||||    
T  37272684 aataaagtcaatctgttttcatataagctataagctgttttcata 37272640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 44422643 - 44422711
Alignment:
Q  1 tgtataagctatttctataacaacatataataaagtcaaactgtttt-atataagttataagctgtttt 68  Q
    |||||||||||||| |||||||  ||| |||||  |||||||||||| ||||||| |||||||| ||||    
T  44422643 tgtataagctatttttataacatgataaaataatctcaaactgttttcatataagctataagctatttt 44422711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 26209540 - 26209467
Alignment:
Q  1 tgtataagctatttctataacaacatataataaagtcaaactgtttt--atataagttataagctgttttcata 72  Q
    |||||||| |||||||||||||| ||| ||||||||| || ||||||  ||||||| |||||||||||||||||    
T  26209540 tgtataagttatttctataacaagataaaataaagtccaattgttttcaatataagctataagctgttttcata 26209467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 14295454 - 14295519
Alignment:
Q  7 agctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttc 69  Q
    ||||||||||||||||| | ||||  ||||||||||||||||| ||||||| ||||||||||||||    
T  14295454 agctatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagctgttttc 14295519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 32059716 - 32059643
Alignment:
Q  1 tgtataagctatttctataac-aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    |||||||||| ||| | |||| || ||| ||||||||||||||||||| ||||||| |||||||||||||||||    
T  32059716 tgtataagctgtttttgtaactaagataaaataaagtcaaactgttttcatataagctataagctgttttcata 32059643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 16889677 - 16889751
Alignment:
Q  1 tgtataagctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    ||||||||||||||| ||||||| | ||||  | ||||||||||||||| ||| ||| |||||||||||||||||    
T  16889677 tgtataagctatttccataacaaaagataaacttaagtcaaactgtttttatagaagctataagctgttttcata 16889751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 28586886 - 28586824
Alignment:
Q  9 ctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgtttt 68  Q
    ||||||||||||||| | ||||  ||||||||||||||||| |||||| ||||||||||||||    
T  28586886 ctatttctataacaaaagataaaataaagtcaaactgttttcatataaattataagctgtttt 28586824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 18704163 - 18704090
Alignment:
Q  1 tgtataagctatttctataacaacatataa-taaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    |||||||| |||||||||||||| | |||| ||||||||| || |||| ||||||| |||||| ||||||||||    
T  18704163 tgtataagttatttctataacaaaagataaataaagtcaagctatttttatataagctataagttgttttcata 18704090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 1619034 - 1619106
Alignment:
Q  1 tgtataagctatttctataacaacatataataaagtcaaactgttt-tatataagttataagctgttttcata 72  Q
    ||||||||||||||||| ||||| | |||||||||| ||| | |||   |||||| |||||||||||||||||    
T  1619034 tgtataagctatttctaaaacaaaaaataataaagttaaattctttccgtataagctataagctgttttcata 1619106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 38338268 - 38338312
Alignment:
Q  3 tataagctatttctataacaacatataataaagtcaaactgtttt 47  Q
    ||||||||| ||||||||||| ||| ||||||||||||| |||||    
T  38338268 tataagctagttctataacaaaataaaataaagtcaaaccgtttt 38338312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 41277448 - 41277404
Alignment:
Q  29 aataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    ||||||||||||||||||| |||||||||| ||| ||||||||||    
T  41277448 aataaagtcaaactgttttcatataagttaaaagttgttttcata 41277404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 42583468 - 42583396
Alignment:
Q  1 tgtataagctatttctataacaacatataataaagtcaaactgttt-tatataagttataagctgttttcata 72  Q
    ||||||||| |||||||||||||   |||| | ||| ||||||||| | |||| |||||||||||||||||||    
T  42583468 tgtataagccatttctataacaaaggataaaatagttaaactgtttatgtatatgttataagctgttttcata 42583396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 6509426 - 6509357
Alignment:
Q  4 ataagctatttctataacaacatataataaagtcaaactgt-tttatataagttataagctgttttcata 72  Q
    ||||| ||| |||||||||| ||| |||||||||||| ||| |||||||||| |||||||||||||||||    
T  6509426 ataagttatatctataacaagataaaataaagtcaaattgtatttatataagctataagctgttttcata 6509357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 11795034 - 11795108
Alignment:
Q  1 tgtataagctatttctataacaa--catataataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    |||||||||| ||||||| ||||  |||| |||||||||| |||||||| ||||||||||||||||| |||||||    
T  11795034 tgtataagctttttctatgacaaaacatacaataaagtcacactgttttcatataagttataagctgatttcata 11795108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 9699943 - 9700018
Alignment:
Q  1 tgtataagctatttctataacaaca--tataataaagtcaaactgtttt-atataagttataagctgttttcatat 73  Q
    ||||||||||||||| ||||||| |  || ||||| |||||| |||||| | |||| |||||||||||||||||||    
T  9699943 tgtataagctatttcgataacaaaagttaaaataaggtcaaattgttttcaaataaattataagctgttttcatat 9700018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 9836979 - 9836908
Alignment:
Q  4 ataagctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    ||||||||||| |||||||||  ||||  |||||||||||| |||| |||||||||| || |||||||||||    
T  9836979 ataagctatttttataacaactgataaagtaaagtcaaactattttcatataagttacaacctgttttcata 9836908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 34236135 - 34236175
Alignment:
Q  29 aataaagtcaaactgttttatataagttataagctgttttc 69  Q
    |||||||| |||||||||| ||| |||||||||||||||||    
T  34236135 aataaagttaaactgttttgtatgagttataagctgttttc 34236175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 5369817 - 5369745
Alignment:
Q  1 tgtataagctatttctataacaacatataataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    ||||||||||| |||||||| || |  |||||||||||||||||||| ||||| | |||||||||||||||||    
T  5369817 tgtataagctaattctataaaaaaaattaataaagtcaaactgttttcatatatgctataagctgttttcata 5369745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 35536049 - 35536114
Alignment:
Q  1 tgtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagct 63  Q
    |||||||||||||||||||||  || ||| |||||||||||| |||||| ||||||||||||||||    
T  35536049 tgtataagctatttctataacataagataaaataaagtcaaattgttttcatataagttataagct 35536114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 49060482 - 49060563
Alignment:
Q  1 tgtataagctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttcatataagcta 79  Q
    ||||||||||||||||||||||| | ||||  |||||||||| | |||| ||||||| |||||| | |||||||||||||||    
T  49060482 tgtataagctatttctataacaaaaaataaaataaagtcaaattatttttatataagctataagttattttcatataagcta 49060563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 45593847 - 45593788
Alignment:
Q  1 tgtataagctatttctataacaa--catataataaagtcaaactgtttt-atataagtta 57  Q
    |||||||||||||||| ||||||  |||| ||||||||||||||||||| ||||||||||    
T  45593847 tgtataagctatttctgtaacaaaacataaaataaagtcaaactgttttcatataagtta 45593788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 5006637 - 5006563
Alignment:
Q  1 tgtataagctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    ||||||||||||| ||||||||| | ||||  ||||||||||||||||| ||||||| |||||  ||||||||||    
T  5006637 tgtataagctattcctataacaaaagataaaataaagtcaaactgttttcatataaggtataaattgttttcata 5006563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 39551675 - 39551602
Alignment:
Q  2 gtataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    ||||||||||||||||||||  || ||||| |||||| |||||||||| ||||||| ||||| || ||||||||    
T  39551675 gtataagctatttctataacaaaagatatactaaagtaaaactgttttcatataagctataatctattttcata 39551602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 5373167 - 5373239
Alignment:
Q  1 tgtataagctatttctataacaacatataa--taaagtc-aaactgttttatataagttataagctgttttca 70  Q
    |||||| |||||||||||||||| | ||||  ||||||| ||||  |||||||||||||||||| ||||||||    
T  5373167 tgtatatgctatttctataacaaaagataaaataaagtccaaacatttttatataagttataagttgttttca 5373239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 9527216 - 9527144
Alignment:
Q  3 tataagctatttctataacaaca--tataataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    |||| ||||| |||||||||| |  |||||||||||||||||||||| ||||||  |||||| ||||||||||    
T  9527216 tatacgctatatctataacaaaagatataataaagtcaaactgttttcatataaactataagttgttttcata 9527144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 28340524 - 28340452
Alignment:
Q  1 tgtataagctatttctataacaac--atataataaagtcaaactgtttt-atataagttataagctgttttca 70  Q
    ||||||||||||||||  |||||   ||| ||||||||||||||||||| || ||||||||||| ||||||||    
T  28340524 tgtataagctatttcttcaacaaacaataaaataaagtcaaactgttttcatgtaagttataagttgttttca 28340452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 31341136 - 31341196
Alignment:
Q  1 tgtataagctatttctataac--aacatataataaagtcaaact-gttttatataagttat 58  Q
    |||||||||||||| ||||||  || ||| |||||||||||||| ||||||||||||||||    
T  31341136 tgtataagctatttgtataacaaaagataaaataaagtcaaactggttttatataagttat 31341196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 47510100 - 47510129
Alignment:
Q  49 tataagttataagctgttttcatataagct 78  Q
    ||||||||||||||||||||||||||||||    
T  47510100 tataagttataagctgttttcatataagct 47510129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 6824860 - 6824931
Alignment:
Q  1 tgtataagctatttctataac--aacatataataaagtcaaactgtttta-tataagttataagctgttttc 69  Q
    |||||||||||||||||||||  || ||| || ||||| ||| ||||||| || ||||||||||||||||||    
T  6824860 tgtataagctatttctataacaaaagatagaacaaagttaaattgttttagtacaagttataagctgttttc 6824931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 29363490 - 29363534
Alignment:
Q  29 aataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    ||||||||||||||||||| |||| |||||||||||||| |||||    
T  29363490 aataaagtcaaactgttttcatattagttataagctgttatcata 29363534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 31338480 - 31338524
Alignment:
Q  29 aataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    ||||||||||||||||||| |||||||||||||| ||||| ||||    
T  31338480 aataaagtcaaactgtttttatataagttataagttgtttccata 31338524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 44821931 - 44821975
Alignment:
Q  29 aataaagtcaaactgtttta-tataagttataagctgttttcata 72  Q
    |||||||||||| ||||||  ||||||||||||||||||||||||    
T  44821931 aataaagtcaaattgtttttgtataagttataagctgttttcata 44821975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 33787873 - 33787799
Alignment:
Q  1 tgtataagctatttctataacaacatataata--aagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    ||||||| ||||||||||||||| |||||| |  |||||||| || ||| |||||||||||||||||||||||||    
T  33787873 tgtataaactatttctataacaaaatataaaacaaagtcaaattgatttcatataagttataagctgttttcata 33787799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 33500609 - 33500540
Alignment:
Q  1 tgtataagctatttctataacaacatataa--taaagtcaaactgttt-tatataagttataagctgttt 67  Q
    ||||||||||||||||||||||| | ||||  |||| |||||||||||  ||||||||||||||||||||    
T  33500609 tgtataagctatttctataacaaaagataaagtaaaatcaaactgtttcaatataagttataagctgttt 33500540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 6647331 - 6647403
Alignment:
Q  1 tgtataagctatttctataacaacatataataaagtcaaact-gttttatataagttataagctgttttcata 72  Q
    |||||||| |||||||||||||| | |||||||||||||| |  ||| ||||| ||||||| |||||||||||    
T  6647331 tgtataagttatttctataacaaaaaataataaagtcaaattactttaatataggttataatctgttttcata 6647403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 10452488 - 10452414
Alignment:
Q  1 tgtataagctatttctataacaacatat--aataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    ||||||||||||||||||||||| ||||  |||||| ||||||| |||| ||||||| |||||| ||||| ||||    
T  10452488 tgtataagctatttctataacaaaatataaaataaaatcaaactattttcatataagctataagttgtttccata 10452414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 29274357 - 29274283
Alignment:
Q  1 tgtataagctatttctata--acaacatataataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    |||||||||||||||||||  | || ||| |||||||||||| |||||| ||||||| ||||| |||||||||||    
T  29274357 tgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctataaactgttttcata 29274283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 5550105 - 5550150
Alignment:
Q  30 ataaagtcaaactgtttt-atataagttataagctgttttcatata 74  Q
    ||||||||||| |||||| ||||||| |||||||||||||||||||    
T  5550105 ataaagtcaaattgttttcatataagctataagctgttttcatata 5550150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 4006659 - 4006730
Alignment:
Q  4 ataagctatttctataacaac--atataataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    ||||| ||||||||||||||   ||| |||||||||||| |||||| ||||||| |||||| ||||||||||    
T  4006659 ataagatatttctataacaaatgataaaataaagtcaaattgtttttatataagctataagttgttttcata 4006730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 10154193 - 10154237
Alignment:
Q  29 aataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    ||||||||||||||||||| ||||||||||||||||  |||||||    
T  10154193 aataaagtcaaactgttttcatataagttataagctactttcata 10154237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 1742157 - 1742063
Alignment:
Q  4 ataagctatttctataacaacatataata--aagtcaaactgttt-tatataagttataagctgttttcatataagctaccataaagagtttatgga 97  Q
    |||| ||||||||||||||| |||||| |  |||||||||| ||| |||||||| ||||||||||||||  |||| ||| ||| |||||||||||||    
T  1742157 ataaactatttctataacaaaatataaaatgaagtcaaactctttatatataagatataagctgttttc--ataatctatcatgaagagtttatgga 1742063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 3235481 - 3235436
Alignment:
Q  29 aataaagtcaaactgttttatataagttataagctgttttcatata 74  Q
    |||||||||||||||||| ||||||  |||||||||||||||||||    
T  3235481 aataaagtcaaactgtttcatataaactataagctgttttcatata 3235436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 5133714 - 5133786
Alignment:
Q  1 tgtataagctatttctataac--aacatataataaagtcaaactg-ttttatataagttataagctgttttca 70  Q
    |||||||||||||||||||||  || ||| |||||||  |||||| ||||||||||| |||||||||||||||    
T  5133714 tgtataagctatttctataacaaaagataaaataaagataaactgtttttatataagatataagctgttttca 5133786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 7103594 - 7103541
Alignment:
Q  16 tataacaacatataataaagtcaaactgtttt-atataagttataagctgtttt 68  Q
    |||||||| ||| ||||||||||||||||||| ||||||| |||||||||||||    
T  7103594 tataacaagataaaataaagtcaaactgttttaatataagctataagctgtttt 7103541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 29430698 - 29430771
Alignment:
Q  1 tgtataagctatttctataacaaca-tataataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    ||||||||||||||||||||||| | |  |||||||||||||||||||  |||||| ||||||||||| |||||    
T  29430698 tgtataagctatttctataacaaaagttaaataaagtcaaactgttttcttataagctataagctgttctcata 29430771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 10143114 - 10143214
Alignment:
Q  1 tgtataagctatttctataac--aacatataataaagtcaaactg-ttttatataagttataagctgttttcatataagctaccataaagagtttatgga 97  Q
    |||||||| ||||||||||||  || ||| ||| ||||||||||| ||||||||||| |||||| | |||||  |||||||| |||  ||||||||||||    
T  10143114 tgtataagttatttctataacaaaagataaaattaagtcaaactgtttttatataagctataagtttttttc--ataagctatcatggagagtttatgga 10143211  T
Q  98 tat 100  Q
    |||    
T  10143212 tat 10143214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 37053544 - 37053609
Alignment:
Q  9 ctatttctataaca--acatataataaagtcaaactgtttt-atataagttataagctgttttcat 71  Q
    ||||||||||||||  | ||| ||||||||||||||||||| |||||||||||||| | |||||||    
T  37053544 ctatttctataacagaaaataaaataaagtcaaactgttttcatataagttataagtttttttcat 37053609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 17952827 - 17952755
Alignment:
Q  3 tataagctatttctataac--aacatataataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    |||||||||||||||||||  || ||| |||||||||||||| |||| ||||||| || ||| ||||||||||    
T  17952827 tataagctatttctataacaaaagataaaataaagtcaaactattttcatataagctacaagatgttttcata 17952755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 29503209 - 29503137
Alignment:
Q  1 tgtataagctatttctataacaacatataataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    |||||| | |||||||||||||| ||| |||||||||||||| |||| | | |||||||||| ||||| ||||    
T  29503209 tgtatatgatatttctataacaagataaaataaagtcaaactattttcaaagaagttataagatgtttccata 29503137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 37276722 - 37276762
Alignment:
Q  33 aagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  37276722 aagtcaaactgttttcatataagttataagttgttttcata 37276762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 24887409 - 24887337
Alignment:
Q  3 tataagctatttctataaca--acatataataaagtcaaactgt-tttatataagttataagctgttttcata 72  Q
    ||||||||||||||||||||  | ||| |||||||||||||||| || ||||||| || ||||||||||||||    
T  24887409 tataagctatttctataacaatagataaaataaagtcaaactgtattcatataagctaaaagctgttttcata 24887337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 28306102 - 28306174
Alignment:
Q  3 tataagctatttctataacaaca--tataataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    |||||||||| |||||||||| |  || ||||||||||||||||||| |||||||||| ||| ||||||||||    
T  28306102 tataagctatctctataacaaaaagtaaaataaagtcaaactgttttcatataagttacaagttgttttcata 28306174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 51278285 - 51278237
Alignment:
Q  1 tgtataagctatttctataacaacatat--aataaagtcaaactgtttt 47  Q
    ||||||||||||||||||||||| ||||  |||||||||||||||||||    
T  51278285 tgtataagctatttctataacaaaatattaaataaagtcaaactgtttt 51278237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 22232768 - 22232842
Alignment:
Q  1 tgtataagctatttctataacaa--catataataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    |||||||||||||| ||||||||   ||| ||||||||||||||||||| ||||||||  |||||| ||||||||    
T  22232768 tgtataagctatttatataacaaatgataaaataaagtcaaactgttttcatataagtcgtaagctattttcata 22232842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 45590770 - 45590812
Alignment:
Q  178 tagtagataagttcaaacaagtcaactcaaacataccctaaat 220  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||    
T  45590770 tagtagataagttcaaaaaagtcaattcaaacaaaccctaaat 45590812  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 38462225 - 38462297
Alignment:
Q  3 tataagctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    ||||||||||||||||| ||| | ||||  ||||||||||||||||| ||||| | ||||| |||||||||||    
T  38462225 tataagctatttctataccaaaagataaaataaagtcaaactgttttcatatatgctataaactgttttcata 38462297  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 2201103 - 2201143
Alignment:
Q  32 aaagtcaaactgtttt-atataagttataagctgttttcat 71  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  2201103 aaagtcaaactgttttcatataagctataagctgttttcat 2201143  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 31337499 - 31337455
Alignment:
Q  29 aataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    ||||||||||||||||||| |||||||||||||| ||| ||||||    
T  31337499 aataaagtcaaactgtttttatataagttataagttgtattcata 31337455  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 41452495 - 41452539
Alignment:
Q  29 aataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    ||||||||||||||||||| |||| |||| |||||||||||||||    
T  41452495 aataaagtcaaactgttttcatattagttgtaagctgttttcata 41452539  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 21952906 - 21952968
Alignment:
Q  4 ataagctatttctataacaaca--tataataaagtcaaactgtttt-atataagttataagct 63  Q
    ||||||||||||||||||||||  || |||||||||||| |||||| ||||||| ||||||||    
T  21952906 ataagctatttctataacaacaagtaaaataaagtcaaattgttttcatataagctataagct 21952968  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 35958597 - 35958671
Alignment:
Q  1 tgtataagctatttctataacaaca--tataataaagtcaaact-gttttatataagttataagctgttttcata 72  Q
    ||||||||||||||||||||||  |  || |||||||||||| | |||||||||||| || ||||||||||||||    
T  35958597 tgtataagctatttctataacataagttaaaataaagtcaaatttgttttatataagctagaagctgttttcata 35958671  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 49219082 - 49219155
Alignment:
Q  2 gtataagctatttctataacaacatat--aataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    ||||||| |||||||||||||| ||||  |||||||||||| | |||| ||||||| |||||| ||||||||||    
T  49219082 gtataagttatttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttttcata 49219155  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 32920523 - 32920454
Alignment:
Q  4 ataagctatttctataacaacatataataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    ||||||||||| |||||||| ||| ||||||||||||  ||||| ||| ||| |||||| ||||||||||    
T  32920523 ataagctatttttataacaagataaaataaagtcaaatcgttttaatagaagctataagttgttttcata 32920454  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 54325165 - 54325093
Alignment:
Q  1 tgtataagctatttctataacaacatataa--taaagtcaaactgtttt-atataagttataagctgttttca 70  Q
    ||||||| |||||||||| |||| | ||||  ||||||||||||||||| ||||||| |||||||| ||||||    
T  54325165 tgtataaactatttctattacaaaagataaaataaagtcaaactgttttcatataagctataagctattttca 54325093  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 55437410 - 55437373
Alignment:
Q  3 tataagctatttctataacaacatataataaagtcaaa 40  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  55437410 tataagctatttctataacaatataaaataaagtcaaa 55437373  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 18628641 - 18628597
Alignment:
Q  29 aataaagtcaaactgtttt-atataagttataagctgttttcata 72  Q
    |||| |||||||||||||| ||||||||||||| |||||||||||    
T  18628641 aatatagtcaaactgtttttatataagttataaactgttttcata 18628597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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