View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8413_low_5 (Length: 497)

Name: NF8413_low_5
Description: NF8413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8413_low_5
NF8413_low_5
[»] chr4 (12 HSPs)
chr4 (18-495)||(21833445-21833940)
chr4 (29-150)||(1755035-1755156)
chr4 (29-134)||(641483-641588)
chr4 (318-434)||(53761012-53761128)
chr4 (29-142)||(3438082-3438195)
chr4 (253-378)||(7308230-7308355)
chr4 (29-198)||(55908104-55908273)
chr4 (251-299)||(1601177-1601225)
chr4 (73-185)||(53761252-53761364)
chr4 (251-300)||(371298-371347)
chr4 (29-142)||(547470-547583)
chr4 (253-305)||(8183616-8183668)
[»] chr3 (5 HSPs)
chr3 (29-185)||(51763835-51763991)
chr3 (312-449)||(51763583-51763720)
chr3 (318-449)||(13469857-13469988)
chr3 (28-107)||(514192-514271)
chr3 (71-125)||(13470184-13470238)
[»] chr1 (4 HSPs)
chr1 (29-203)||(19467876-19468050)
chr1 (252-456)||(19467623-19467827)
chr1 (29-126)||(17352198-17352295)
chr1 (253-295)||(7554870-7554912)
[»] chr5 (6 HSPs)
chr5 (29-200)||(28532268-28532439)
chr5 (347-456)||(28532580-28532689)
chr5 (29-150)||(32268029-32268150)
chr5 (29-185)||(41888937-41889096)
chr5 (38-143)||(41900966-41901071)
chr5 (251-299)||(41900804-41900852)
[»] chr7 (3 HSPs)
chr7 (36-185)||(10169525-10169674)
chr7 (36-185)||(10177050-10177199)
chr7 (328-441)||(10615440-10615553)
[»] chr6 (4 HSPs)
chr6 (347-456)||(6588459-6588568)
chr6 (95-203)||(6588700-6588808)
chr6 (318-449)||(6416809-6416940)
chr6 (88-126)||(6416576-6416614)
[»] chr8 (4 HSPs)
chr8 (332-385)||(17635904-17635957)
chr8 (312-385)||(18318891-18318964)
chr8 (251-385)||(18314885-18315019)
chr8 (83-143)||(27922699-27922759)
[»] chr2 (1 HSPs)
chr2 (29-198)||(1037040-1037209)


Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 495
Target Start/End: Complemental strand, 21833940 - 21833445
Alignment:
Q  18 caccatgacctttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21833940 caccatgacctttggataacaaacaaaagattccatcataactatagccggtgcattttcgaaggacaagcctcgttaaaggaagaccttcccttgcaat 21833841  T
Q  118 agagtagagtaactcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactcagtaatgagccaataaaatat------------ 205  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||                
T  21833840 agagtagagtaactcatccaagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactcactaatgagccaataaaatatgaagcagtgaag 21833741  T
Q  206 ------aaatatgaagcagcgaagtctggtatgacataagcgctactactagaaaaggataaagaactcaatgttggtctctcgaggagagctgaagcaa 299  Q
          ||| || |||||| || |||||| ||| |||||  |||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||    
T  21833740 ccaataaaacataaagcagtgatgtctggcatgccataactgctactaccagaaaaggataaagaactcaatgttggtctctcacggagagctgaagcaa 21833641  T
Q  300 tgcctgttcctcttatttgatcacaatcaaacatgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattgactgtttatggggaa 399  Q
    |||||  ||  ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||    
T  21833640 tgccttctctgcttatttgatcacaatcaaacatgatgacctcttcaagaagcttacaattctttagcaagtggaaaagagattgattgtttatgggaaa 21833541  T
Q  400 gccagaaagattaacctttcggagtttgataagtgcaagtgaaagagcttttaccccttcaacatagagaatgtacttttcactatataaggggta 495  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21833540 gccagaaagattaaccttgcggagtttgataagtgcaagtgaaagagcttttaccccttcaacatagagaatgtacttttcaccatataaggggta 21833445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 150
Target Start/End: Original strand, 1755035 - 1755156
Alignment:
Q  29 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 128  Q
    ||||||||||||||   ||||||||||||||||||||||||||||| || ||| ||||||||| | |||||||||| || | ||||||||||||| || |    
T  1755035 ttggataacaaacatcggattccatcataactatagccggtgcaatgtccaagcacaagcctcttcaaaggaagacttttcattgcaatagagtacagca 1755134  T
Q  129 actcatccgagatatacaaaga 150  Q
     |||||||||||||| ||||||    
T  1755135 gctcatccgagatattcaaaga 1755156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 641483 - 641588
Alignment:
Q  29 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 128  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||| |  |||||||| ||||| |||||||| |||| | ||||||||||| |||| |    
T  641483 ttggataacaaacacaagattccatcataagtatagccggtgcaattgcagaggacaagtctcgtcaaaggaaggcctttcattgcaatagaggagagaa 641582  T
Q  129 actcat 134  Q
    ||||||    
T  641583 actcat 641588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 318 - 434
Target Start/End: Complemental strand, 53761128 - 53761012
Alignment:
Q  318 gatcacaatcaaacatgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagattaacctt 417  Q
    ||||||| | ||||| |||| | |||| |||||| ||||||||||| |||||||||||||| |||||   | ||||||  ||||||||||||||||||||    
T  53761128 gatcacagttaaacaagatgacctcttgaagaagattacaattcttcaacaagtggaaaagtgattgttcgattatggttaagccagaaagattaacctt 53761029  T
Q  418 tcggagtttgataagtg 434  Q
     |||||||||| |||||    
T  53761028 acggagtttgaaaagtg 53761012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 29 - 142
Target Start/End: Complemental strand, 3438195 - 3438082
Alignment:
Q  29 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 128  Q
    |||||||||| | |||||||| || ||||||||||||||||||||||  | |||||||||||  | |||||||||||| |  ||||||||||| | ||||    
T  3438195 ttggataacagagaaaagatttcagcataactatagccggtgcaattgtggaggacaagccttctcaaaggaagacctccaattgcaatagaggaaagta 3438096  T
Q  129 actcatccgagata 142  Q
    | ||||||| ||||    
T  3438095 attcatccgggata 3438082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 378
Target Start/End: Original strand, 7308230 - 7308355
Alignment:
Q  253 aaaggataaagaactcaatgttggtctctcgaggagagctgaagcaatgcctgttcctcttatttgatcacaatcaaacatgatggcttcttcaagaagc 352  Q
    |||||||||||| | |||||||||||||||  | ||||| | |||||||||||      ||| ||||| ||| || || |||||||| ||||| ||||||    
T  7308230 aaaggataaagagcgcaatgttggtctctcatgtagagcagtagcaatgcctgcgttggttagttgatgacagtctaatatgatggcctcttccagaagc 7308329  T
Q  353 ttacaattctttaacaagtggaaaag 378  Q
    ||||||||||| ||||||||||||||    
T  7308330 ttacaattcttaaacaagtggaaaag 7308355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 198
Target Start/End: Complemental strand, 55908273 - 55908104
Alignment:
Q  29 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 128  Q
    |||||||||||| |  | |||||| ||||| ||||||||||||||||| | |||||||| ||  | |||||||||||| || ||||||||||  | || |    
T  55908273 ttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaatagaaaaaagca 55908174  T
Q  129 actcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactcagtaatgagccaat 198  Q
    | |||||||||||   ||||||   |||| |||||||||| || || ||||||||||  || ||||||||    
T  55908173 attcatccgagatgcgcaaagacgacaaattaagacaagttaagccattcaaactcaccaacgagccaat 55908104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 1601177 - 1601225
Alignment:
Q  251 gaaaaggataaagaactcaatgttggtctctcgaggagagctgaagcaa 299  Q
    |||||||||||||| |||||||||||||||||  ||||||| |||||||    
T  1601177 gaaaaggataaagacctcaatgttggtctctcacggagagcagaagcaa 1601225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 185
Target Start/End: Complemental strand, 53761364 - 53761252
Alignment:
Q  73 atttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaacgcaaactaagacaagtcaaa 172  Q
    |||| |||||||||| || || |||||||||| |||| |||||||||||||||| |||| ||| || ||    |||    ||||| ||||| ||||||||    
T  53761364 attttgaaggacaagacttgtcaaaggaagacattcctttgcaatagagtagagcaacttatctgaaattcctaaatgctgcaaattaagagaagtcaaa 53761265  T
Q  173 cccttcaaactca 185  Q
    |||||||||||||    
T  53761264 cccttcaaactca 53761252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 371298 - 371347
Alignment:
Q  251 gaaaaggataaagaactcaatgttggtctctcgaggagagctgaagcaat 300  Q
    ||||||||||||||  |||||||||||||||  |||||||| ||||||||    
T  371298 gaaaaggataaagaggtcaatgttggtctctgaaggagagcagaagcaat 371347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 547470 - 547583
Alignment:
Q  29 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 128  Q
    ||||| || |||||| | |||||| ||||||||||||||   |||||| | ||||||||| |  | ||||||| | ||||| ||||||||||| |||| |    
T  547470 ttggacaaaaaacaagatattccagcataactatagccgaaacaattttggaggacaagctttctcaaaggaatagcttccattgcaatagaggagagca 547569  T
Q  129 actcatccgagata 142  Q
    ||  ||||||||||    
T  547570 acatatccgagata 547583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 8183668 - 8183616
Alignment:
Q  253 aaaggataaagaactcaatgttggtctctcgaggagagctgaagcaatgcctg 305  Q
    |||||||||||| ||||||||||||||||| || |  || |||||||||||||    
T  8183668 aaaggataaagacctcaatgttggtctctcaagtaatgcagaagcaatgcctg 8183616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 51763991 - 51763835
Alignment:
Q  29 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 128  Q
    ||||||| |||||||| ||||||| ||||||||||||| |||||| || |||||||||||||  | ||| ||||||||||||||||||| |||||||| |    
T  51763991 ttggataccaaacaaatgattccagcataactatagcccgtgcaaatttgaaggacaagccttttcaaaagaagaccttcccttgcaatcgagtagagca 51763892  T
Q  129 actcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactca 185  Q
    ||||||| ||||| | ||||     ||||  |||| |||||||||||||||||||||    
T  51763891 actcatcagagattttcaaacgcttcaaatcaagagaagtcaaacccttcaaactca 51763835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 312 - 449
Target Start/End: Complemental strand, 51763720 - 51763583
Alignment:
Q  312 ttatttgatcacaatcaaacatgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagatt 411  Q
    ||||||||||||| |||||||||||| | ||||  ||||||||||| ||   ||  | ||||||||| |||||| ||||||||||  ||||||||| |||    
T  51763720 ttatttgatcacagtcaaacatgatgacatcttggagaagcttacagttgcatagaaggtggaaaagcgattgattgtttatgggacagccagaaaaatt 51763621  T
Q  412 aacctttcggagtttgataagtgcaagtgaaagagctt 449  Q
    |||||| || ||||||| ||| ||||||||||| ||||    
T  51763620 aaccttacgcagtttgaaaagagcaagtgaaagtgctt 51763583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 318 - 449
Target Start/End: Complemental strand, 13469988 - 13469857
Alignment:
Q  318 gatcacaatcaaacatgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagattaacctt 417  Q
    ||||||||  |||||||||| ||||||| ||||||||||| || |  || ||||||||||| ||| |  ||||||| || || | |||||||||||||||    
T  13469988 gatcacaactaaacatgatgacttcttcgagaagcttacagttgtggaataagtggaaaagtgataggttgtttataggaaaactagaaagattaacctt 13469889  T
Q  418 tcggagtttgataagtgcaagtgaaagagctt 449  Q
     |||||||| | |||||||||||| |||||||    
T  13469888 gcggagtttaaaaagtgcaagtgatagagctt 13469857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 514271 - 514192
Alignment:
Q  28 tttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagacctt 107  Q
    ||||||||||||| |||||||||||||||| |  |||||||| ||| | || || ||||| ||| |||||||||||||||    
T  514271 tttggataacaaagaaaagattccatcatagccgtagccggtacaactacggagcacaagtctccttaaaggaagacctt 514192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 13470238 - 13470184
Alignment:
Q  71 caatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtaga 125  Q
    |||| ||| ||| ||| |||||| |||||||||||||||||||||||| ||||||    
T  13470238 caatgtcggagggcaaacctcgtcaaaggaagaccttcccttgcaatacagtaga 13470184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 19468050 - 19467876
Alignment:
Q  29 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 128  Q
    |||||||||||||||||||||||| |||| |||| |||   ||||| |   |||||||||||||| ||||| || ||||||| ||||||||||||||| |    
T  19468050 ttggataacaaacaaaagattccagcatagctatggccaaagcaatatttgaggacaagcctcgtcaaaggtagcccttcccgtgcaatagagtagagca 19467951  T
Q  129 actcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactcagtaatgagccaataaaat 203  Q
      ||||| ||||||| || | | | | || ||||| |||||||||||||||||||||| |||||| |||||||||    
T  19467950 tttcatcagagatattcagaaaccaccaagtaagagaagtcaaacccttcaaactcagcaatgagtcaataaaat 19467876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 252 - 456
Target Start/End: Complemental strand, 19467827 - 19467623
Alignment:
Q  252 aaaaggataaagaactcaatgttggtctctcgaggagagctgaagcaatgcctgttcctcttatttgatcacaatcaaacatgatggcttcttcaagaag 351  Q
    |||| |||||||| |||||||||||||||||  ||| ||| |||||||| || |      | |||||||||||   ||||||| |  | |||||||||||    
T  19467827 aaaacgataaagacctcaatgttggtctctcacggatagcagaagcaattccagcaatagtcatttgatcacaccaaaacatggtaacctcttcaagaag 19467728  T
Q  352 cttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagattaacctttcggagtttgataagtgcaagtgaaagagctttt 451  Q
    ||||||||| || |||||||| ||||  ||||    | | ||||| |||||||||||||||||||| |||||||||| |||||||||||||||||| | |    
T  19467727 cttacaattgttaaacaagtgaaaaatcgatttgtcgctcatgggaaagccagaaagattaaccttgcggagtttgagaagtgcaagtgaaagagcctct 19467628  T
Q  452 acccc 456  Q
    |||||    
T  19467627 acccc 19467623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 17352198 - 17352295
Alignment:
Q  29 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagag 126  Q
    |||||||||||| ||||  ||||| ||||||| ||||| ||| ||| | |||||||||| ||| | ||||||| ||| ||| ||||||||||| ||||    
T  17352198 ttggataacaaagaaaaagttccagcataactgtagccagtggaatattgaaggacaagtctcctgaaaggaaaaccctcctttgcaatagaggagag 17352295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 7554870 - 7554912
Alignment:
Q  253 aaaggataaagaactcaatgttggtctctcgaggagagctgaa 295  Q
    |||||||||||| |||||||||||||||||  |||||||||||    
T  7554870 aaaggataaagacctcaatgttggtctctcatggagagctgaa 7554912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 28532268 - 28532439
Alignment:
Q  29 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 128  Q
    ||||||||||||||||||| ||| ||||||||||||||   || ||||   ||||||||| |  | |||||||||||| |||||||||||| |||||| |    
T  28532268 ttggataacaaacaaaagagtccgtcataactatagccccagcgattttttaggacaagctttatcaaaggaagacctccccttgcaatagtgtagagca 28532367  T
Q  129 actcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactcagtaatgagccaataa 200  Q
    ||||||| || ||||  ||| ||  ||||| |||||||||||||||||| |||||||  |||||| ||||||    
T  28532368 actcatcagaaatattaaaataatacaaaccaagacaagtcaaacccttgaaactcaccaatgagtcaataa 28532439  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 456
Target Start/End: Original strand, 28532580 - 28532689
Alignment:
Q  347 agaagcttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagattaacctttcggagtttgataagtgcaagtgaaagag 446  Q
    ||||||||||| ||  | |||||||||||||| |||||  |||| ||||| |||  ||||||||||||||| |||||||||  ||||| |||||| ||||    
T  28532580 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgtgaagtgaaagtgagagag 28532679  T
Q  447 cttttacccc 456  Q
    | | ||||||    
T  28532680 cctctacccc 28532689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 150
Target Start/End: Original strand, 32268029 - 32268150
Alignment:
Q  29 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 128  Q
    |||||||  ||| ||| |||||||  ||| |||||||||||||||| | | || ||||||||||| |||||||||| ||    |||||||||| |||| |    
T  32268029 ttggatagtaaagaaaggattccagaatagctatagccggtgcaatcttggagaacaagcctcgtcaaaggaagacattggtatgcaatagaggagagca 32268128  T
Q  129 actcatccgagatatacaaaga 150  Q
    ||||||| ||||||| ||||||    
T  32268129 actcatctgagatattcaaaga 32268150  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 41889096 - 41888937
Alignment:
Q  29 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcg-aaggacaa--gcctcgttaaaggaagaccttcccttgcaatagagtaga 125  Q
    |||||||  ||||||||||||||| |||||||| |||||||||||||| | | ||| ||   ||| || ||| ||| ||||| | ||||||||||| | |    
T  41889096 ttggatagtaaacaaaagattccagcataactaaagccggtgcaattttgtagggagaaccacctagtcaaaagaaaaccttgcattgcaatagaggaaa 41888997  T
Q  126 gtaactcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactca 185  Q
    | | |||||| ||||||| |||||||  ||||  ||||||||||||   |||||||||||    
T  41888996 gcatctcatcggagatattcaaagaaaacaaatcaagacaagtcaagtacttcaaactca 41888937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 41901071 - 41900966
Alignment:
Q  38 aaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccg 137  Q
    |||||||  ||||||  ||||||||| |||||||||||| | || |||||||| || ||||| |||||||   |||||||||||  ||| ||| |||| |    
T  41901071 aaacaaataattccagaataactataaccggtgcaattttggagaacaagcctagtcaaaggtagaccttggattgcaatagagatgagaaacacatctg 41900972  T
Q  138 agatat 143  Q
    ||||||    
T  41900971 agatat 41900966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 41900852 - 41900804
Alignment:
Q  251 gaaaaggataaagaactcaatgttggtctctcgaggagagctgaagcaa 299  Q
    ||||| |||||||| |||||||||||||||| | ||||||| |||||||    
T  41900852 gaaaatgataaagacctcaatgttggtctctggcggagagcagaagcaa 41900804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 185
Target Start/End: Complemental strand, 10169674 - 10169525
Alignment:
Q  36 acaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatc 135  Q
    ||||||||||||||||| |||| || ||| |   ||||| ||  ||| |||||||||| ||||| ||||||||||| |||||||||||||| |  |||||    
T  10169674 acaaacaaaagattccagcatagctttagtccaagcaatatctgagggcaagcctcgtcaaaggtagaccttccctcgcaatagagtagagcatttcatc 10169575  T
Q  136 cgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactca 185  Q
     ||||||| || ||| | ||||  |||| |||||||||||||||||||||    
T  10169574 agagatatccagagatctcaaagaaagagaagtcaaacccttcaaactca 10169525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 185
Target Start/End: Complemental strand, 10177199 - 10177050
Alignment:
Q  36 acaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatc 135  Q
    ||||||||||||||||| |||| || ||| |   ||||| ||  ||| |||||||||| ||||| ||||||||||| |||||||||||||| |  |||||    
T  10177199 acaaacaaaagattccagcatagctttagtccaagcaatatctgagggcaagcctcgtcaaaggtagaccttccctcgcaatagagtagagcatttcatc 10177100  T
Q  136 cgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactca 185  Q
     ||||||| || ||| | ||||  |||| |||||||||||||||||||||    
T  10177099 agagatatccagagatctcaaagaaagagaagtcaaacccttcaaactca 10177050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 441
Target Start/End: Original strand, 10615440 - 10615553
Alignment:
Q  328 aaacatgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagattaacctttcggagtttg 427  Q
    ||||| |||| | ||||||||||||||||| || |  | |||||||| ||| |||||| |||||||| | || | ||||||||||||||| ||||||||     
T  10615440 aaacaagatgacctcttcaagaagcttacagttgtcgagcaagtggagaagggattgattgtttatgagaaaactagaaagattaaccttgcggagttta 10615539  T
Q  428 ataagtgcaagtga 441  Q
    | ||||| ||||||    
T  10615540 aaaagtgaaagtga 10615553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 347 - 456
Target Start/End: Complemental strand, 6588568 - 6588459
Alignment:
Q  347 agaagcttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagattaacctttcggagtttgataagtgcaagtgaaagag 446  Q
    |||||||||||||| || |||||||||||||| |||||| |||| ||||| |||  ||||||||||||||| || ||||||| |||||| ||||| ||||    
T  6588568 agaagcttacaattgttgaacaagtggaaaagcgattgattgttgatgggaaagtaagaaagattaaccttgcgaagtttgaaaagtgcgagtgagagag 6588469  T
Q  447 cttttacccc 456  Q
    | | ||||||    
T  6588468 cctgtacccc 6588459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 95 - 203
Target Start/End: Complemental strand, 6588808 - 6588700
Alignment:
Q  95 aaaggaagaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactcagtaatgagc 194  Q
    |||||||||| || ||||||||||| |||||| |||||||| ||||||| ||||| |  ||||| |||||||||||||| |||||||||||  ||||||     
T  6588808 aaaggaagacgtttccttgcaatagtgtagagcaactcatcggagatattcaaagcagacaaaccaagacaagtcaaactcttcaaactcaccaatgagt 6588709  T
Q  195 caataaaat 203  Q
    |||| ||||    
T  6588708 caattaaat 6588700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 449
Target Start/End: Original strand, 6416809 - 6416940
Alignment:
Q  318 gatcacaatcaaacatgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagattaacctt 417  Q
    ||||||||  |||||||||| ||||||| ||||||||||| || |  || || |||||||| |||||  ||||||  || || | |||||||||||| ||    
T  6416809 gatcacaactaaacatgatgacttcttcgagaagcttacagttgtggaataactggaaaagggattggttgtttacaggaaatctagaaagattaacttt 6416908  T
Q  418 tcggagtttgataagtgcaagtgaaagagctt 449  Q
     |||||||| | |||||||||||| |||||||    
T  6416909 gcggagtttaaaaagtgcaagtgatagagctt 6416940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 6416576 - 6416614
Alignment:
Q  88 cctcgttaaaggaagaccttcccttgcaatagagtagag 126  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  6416576 cctcgtcaaaggaagaccttcccttgcaatacagtagag 6416614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 17635957 - 17635904
Alignment:
Q  332 atgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattga 385  Q
    ||||||||||||||||||| ||| |||||||| ||||||| || ||||||||||    
T  17635957 atgatggcttcttcaagaaacttccaattcttgaacaagttgagaagagattga 17635904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 312 - 385
Target Start/End: Complemental strand, 18318964 - 18318891
Alignment:
Q  312 ttatttgatcacaatcaaacatgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattga 385  Q
    ||||||||||||| ||||  |||||||| ||||| |||||||| || ||||| |||||||||| ||| ||||||    
T  18318964 ttatttgatcacagtcaagtatgatggcctcttcgagaagcttccagttcttgaacaagtggataagcgattga 18318891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 18315019 - 18314885
Alignment:
Q  251 gaaaaggataaagaactcaatgttggtctctcgaggagagctgaagcaatgcctgttcctcttatttgatcacaatcaaacatgatggcttcttcaagaa 350  Q
    |||| ||||||||| ||||| |||||||||||  |||||||  ||||||| || |      ||||||||| ||| | ||| ||||| |  ||||| ||||    
T  18315019 gaaatggataaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgtctcttcgagaa 18314920  T
Q  351 gcttacaattctttaacaagtggaaaagagattga 385  Q
    ||||||| ||||| |||||||||||||| ||||||    
T  18314919 gcttacagttcttgaacaagtggaaaagcgattga 18314885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 27922699 - 27922759
Alignment:
Q  83 acaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccgagatat 143  Q
    ||||||||||| ||||| |||| |||  | ||||||||| |||| ||||||||||||||||    
T  27922699 acaagcctcgtcaaaggtagacgttcggtggcaatagaggagagcaactcatccgagatat 27922759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 198
Target Start/End: Complemental strand, 1037209 - 1037040
Alignment:
Q  29 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 128  Q
    |||||||||||| |  | |||||| ||||| |||||| |||||||||| | |||||||| ||  | |||||||||||| || ||||||||||  | || |    
T  1037209 ttggataacaaagagtatattccaacataattatagctggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaatagaaaaaagca 1037110  T
Q  129 actcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactcagtaatgagccaat 198  Q
    | |||||||| ||   ||||||   |||| |||||||||| || || ||||||||||  || ||||||||    
T  1037109 attcatccgaaatgcgcaaagatgacaaattaagacaagttaagccattcaaactcaccaacgagccaat 1037040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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