View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8413_low_6 (Length: 489)

Name: NF8413_low_6
Description: NF8413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8413_low_6
NF8413_low_6
[»] chr5 (4 HSPs)
chr5 (17-489)||(9197863-9198341)
chr5 (207-333)||(26449066-26449190)
chr5 (219-310)||(32528994-32529083)
chr5 (272-327)||(3522516-3522571)
[»] chr8 (3 HSPs)
chr8 (188-348)||(33304047-33304205)
chr8 (402-463)||(32897512-32897574)
chr8 (207-327)||(32897613-32897731)
[»] chr1 (3 HSPs)
chr1 (207-327)||(42471282-42471404)
chr1 (271-326)||(44108879-44108934)
chr1 (219-310)||(5715034-5715123)
[»] chr2 (3 HSPs)
chr2 (230-331)||(40626995-40627094)
chr2 (229-333)||(19427141-19427243)
chr2 (271-329)||(29463222-29463280)
[»] scaffold0377 (1 HSPs)
scaffold0377 (271-333)||(11929-11991)
[»] chr7 (2 HSPs)
chr7 (271-333)||(42078130-42078192)
chr7 (271-333)||(37970443-37970505)
[»] chr4 (3 HSPs)
chr4 (271-333)||(14518556-14518618)
chr4 (169-250)||(26634552-26634632)
chr4 (271-332)||(171929-171990)
[»] chr3 (3 HSPs)
chr3 (219-328)||(40417621-40417727)
chr3 (271-326)||(20525556-20525611)
chr3 (224-299)||(48935746-48935819)
[»] chr6 (1 HSPs)
chr6 (239-314)||(31799395-31799468)


Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 17 - 489
Target Start/End: Complemental strand, 9198341 - 9197863
Alignment:
Q  17 acgaaggagggatttgcaaacacaaaagctttgtgtggccaaagggtcatggtgtgtatgtgac------agaagtgaaaaataagatttcttgacggac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||      ||||||||||||||||||||||||||||||    
T  9198341 acgaaggagggatttgcaaacacaaaagctttgtgtggccaaagggtcatggtgtgtgtgtgactgtgacagaagtgaaaaataagatttcttgacggac 9198242  T
Q  111 caaaatgcttcatgatactcatagaaaacttatacagggcattcctaaaagttcgggatccgtttgatgtgcaggacatgaaagagacgtgataaaatta 210  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||  |||||| ||||    
T  9198241 caaaatacttcatgatactcatagaaaacttataccgggcattcctaaaagtttgggatccgtttgatgtgcaggatatgaaagagatatgataagatta 9198142  T
Q  211 gaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatattatttt 310  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||    
T  9198141 aaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcatacgttcttggtgcacacatgataaaaaagatgataatattatttt 9198042  T
Q  311 atcatattatgtgtttgatgcacgtgttattaacatgaaggggnnnnnnnnnttaacaacgctggggcatattcatctccaccatttgcccccttcgtca 410  Q
    |||||||||||||||||||||||||||||||||||||||||           ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9198041 atcatattatgtgtttgatgcacgtgttattaacatgaaggaaaaaaagaaattaacaacgttggggcatattcatctccaccatttgcccccttcgtca 9197942  T
Q  411 ttccatcaaccagattcattgtctttgaacaccgccatcgagcctccatcttcagctgatgaaacattgtccccttcca 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9197941 ttccatcaaccagattcattgtctttgaacaccgccatcgagcctccatcttcagccgatgaaacattgtccccttcca 9197863  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 207 - 333
Target Start/End: Complemental strand, 26449190 - 26449066
Alignment:
Q  207 attagaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatatta 306  Q
    ||||||||||| ||||| ||| |||||||||| || | |||||||||||||| | ||||  | |||||||||||| ||||||| ||||||||||  ||||    
T  26449190 attagaaaatggataaaaatatgatatgatagtgacatgatagacacttatcctatcat--gcttttggtgcacatatgataagaaagatgatatcatta 26449093  T
Q  307 ttttatcatattatgtgtttgatgcac 333  Q
    ||||||| ||| ||||||||| |||||    
T  26449092 ttttatcctatcatgtgtttgttgcac 26449066  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 310
Target Start/End: Original strand, 32528994 - 32529083
Alignment:
Q  219 ataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatattatttt 310  Q
    |||||||||||||||||||  |||| |||||||||||||  | ||||  || ||||||||| | ||||||||||| |||||| |||||||||    
T  32528994 ataaagataggatatgatactgatatgatagacacttattctatcat--gtgtttggtgcatagatgataacaaatatgatagtattatttt 32529083  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 3522516 - 3522571
Alignment:
Q  272 ttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttg 327  Q
    ||||||||| |||||||| ||||||||||| ||||||||||| |||  ||||||||    
T  3522516 ttggtgcacgcatgataaaaaagatgataacattattttatcctatcgtgtgtttg 3522571  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 348
Target Start/End: Original strand, 33304047 - 33304205
Alignment:
Q  188 atgaaagagacgtgataaaattagaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgat 287  Q
    |||| ||||||  ||||| ||||||||||| |||||||||| ||||||| | |||  |||||||| |||| || | ||  || |||| || |||||||||    
T  33304047 atgatagagactagataagattagaaaatggataaagatag-atatgatcgtgatg-gatagacatttattatattat--gtgtttgatgtacacatgat 33304142  T
Q  288 aacaaagatgataatattattttatcatattatgtgtttgatg--cacgtgttattaacatga 348  Q
    || ||||||||||||||| ||||||| |||||| | |||||||  ||| ||||||||||||||    
T  33304143 aagaaagatgataatattgttttatcttattatatatttgatgcacacttgttattaacatga 33304205  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 463
Target Start/End: Complemental strand, 32897574 - 32897512
Alignment:
Q  402 ccttcgtcattccatca-accagattcattgtctttgaacaccgccatcgagcctccatcttc 463  Q
    ||||| || |||||||| |||| ||||||||||||||| ||||| | ||||||||||||||||    
T  32897574 ccttcctcgttccatcataccaaattcattgtctttgagcaccgtcgtcgagcctccatcttc 32897512  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 327
Target Start/End: Complemental strand, 32897731 - 32897613
Alignment:
Q  207 attagaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatatta 306  Q
    ||||||||||| || |||||| |||| ||||| || | |||||||| ||||| | ||||| |  ||||||||| | ||||||| ||||| ||||| |||     
T  32897731 attagaaaatggatcaagatatgataggatagtgacatgatagacatttatcctatcatacg--tttggtgcagatatgataagaaagaggataacattt 32897634  T
Q  307 ttttatcatattatgtgtttg 327  Q
    ||||||| ||| || ||||||    
T  32897633 ttttatcctatcatatgtttg 32897613  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 207 - 327
Target Start/End: Original strand, 42471282 - 42471404
Alignment:
Q  207 attagaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatatta 306  Q
    ||||||||||  ||||||||| |||||||||  |||| |||||||| ||||||| ||||  || ||||||||||||||||||| ||| ||||||  ||||    
T  42471282 attagaaaatagataaagatatgatatgataatgatatgatagacatttatcatatcat--gtgtttggtgcacacatgataagaaatatgatagcatta 42471379  T
Q  307 ttt----tatcatattatgtgtttg 327  Q
    |||    |||||||| |||||||||    
T  42471380 tttatcatatcatatcatgtgtttg 42471404  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 271 - 326
Target Start/End: Complemental strand, 44108934 - 44108879
Alignment:
Q  271 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgttt 326  Q
    ||||| ||||||||||||| ||| ||||||  ||||||||||||||||||||||||    
T  44108934 tttggggcacacatgataataaacatgatagcattattttatcatattatgtgttt 44108879  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 310
Target Start/End: Original strand, 5715034 - 5715123
Alignment:
Q  219 ataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatattatttt 310  Q
    ||||||||  || ||||||| | ||||||||| | ||||||| ||||| ||||  ||||||| |||||||| ||| || |||||||||||||    
T  5715034 ataaagatgagacatgatagtggtaagatagatatttatcatatcatatgttt--ggtgcacgcatgataataaatattataatattatttt 5715123  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 230 - 331
Target Start/End: Complemental strand, 40627094 - 40626995
Alignment:
Q  230 atatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgat 329  Q
    |||||||||  | |||||||||||||||||| ||||  || |||||| |||||||||||| || || |||| | ||||||||| |||| |||||||||||    
T  40627094 atatgatagtaacaagatagacacttatcatttcat--gtgtttggtacacacatgataagaaggaggatattcttattttattatatcatgtgtttgat 40626997  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 333
Target Start/End: Complemental strand, 19427243 - 19427141
Alignment:
Q  229 gatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttga 328  Q
    ||||| |||| |||||||||||||  |||| ||||||| |  ||||||||| | ||||||| ||| ||||||  ||||| |||||||||| ||||||||     
T  19427243 gatatcatagtgataagatagacatctatcgtgtcatacg--tttggtgcatatatgataataaatatgatagcattatgttatcatattttgtgtttgg 19427146  T
Q  329 tgcac 333  Q
    |||||    
T  19427145 tgcac 19427141  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 329
Target Start/End: Complemental strand, 29463280 - 29463222
Alignment:
Q  271 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgat 329  Q
    ||||||| ||| ||||||| ||||||||||  ||||||||||||||| || ||||||||    
T  29463280 tttggtgtacatatgataagaaagatgatagcattattttatcatatcatatgtttgat 29463222  T

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Target: scaffold0377 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 11991 - 11929
Alignment:
Q  271 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgatgcac 333  Q
    |||||||||| |||||||  ||| ||||||| ||||||||||||||| |||| ||||||||||    
T  11991 tttggtgcacgcatgataggaaatatgataacattattttatcatatcatgtttttgatgcac 11929  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 42078192 - 42078130
Alignment:
Q  271 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgatgcac 333  Q
    |||||||||| |||||||| ||| ||||||| ||||||||||||||| || | ||||||||||    
T  42078192 tttggtgcacgcatgataagaaatatgataacattattttatcatatcatatttttgatgcac 42078130  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 37970505 - 37970443
Alignment:
Q  271 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgatgcac 333  Q
    |||||||||||| |||||| ||||||||||  ||||||||||| ||| ||| ||||| |||||    
T  37970505 tttggtgcacacttgataaaaaagatgatagcattattttatcctatcatgcgtttggtgcac 37970443  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 14518618 - 14518556
Alignment:
Q  271 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgatgcac 333  Q
    |||| ||| |||| ||||| ||||||||||||||||||||||||||| || |||||| |||||    
T  14518618 tttgatgcgcacaagataagaaagatgataatattattttatcatatcatatgtttggtgcac 14518556  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 26634552 - 26634632
Alignment:
Q  169 tccgtttgatgtgcaggacatgaaagagacgtgataaaattagaaaatgaataaagataggatatgatagggataagataga 250  Q
    ||||||||||| | | || |||| | |||| ||||| |||||||||||| ||||||||| |||||||||| |||||||||||    
T  26634552 tccgtttgatgcgtatgatatgatacagacatgatagaattagaaaatggataaagata-gatatgatagtgataagataga 26634632  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 332
Target Start/End: Original strand, 171929 - 171990
Alignment:
Q  271 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgatgca 332  Q
    |||| |||||||| ||||||||| || || ||||||||||||||||| |||| ||| |||||    
T  171929 tttgatgcacacaagataacaaatattatcatattattttatcatatcatgtattttatgca 171990  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 328
Target Start/End: Complemental strand, 40417727 - 40417621
Alignment:
Q  219 ataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatattattttatcatatt 318  Q
    |||| |||||||||||| || || | |||| ||| ||||||| ||||| ||||  ||||||| |||||||| ||| ||||||  |||||||||||||||     
T  40417727 ataaggataggatatgacagtgacatgata-acatttatcatatcatatgttt--ggtgcacgcatgataagaaatatgatagcattattttatcatatc 40417631  T
Q  319 atgtgtttga 328  Q
    ||||||||||    
T  40417630 atgtgtttga 40417621  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 326
Target Start/End: Complemental strand, 20525611 - 20525556
Alignment:
Q  271 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgttt 326  Q
    ||||||||| | ||||||| |||||||||| |||||||||||||||| || |||||    
T  20525611 tttggtgcagatatgataagaaagatgatattattattttatcatatcatatgttt 20525556  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 299
Target Start/End: Original strand, 48935746 - 48935819
Alignment:
Q  224 gataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgat 299  Q
    ||||||||| ||||| || | |||||||||||||| | ||||  || ||||||| ||||||||||| |||||||||    
T  48935746 gataggataggatagtgacatgatagacacttatcctatcat--gtgtttggtgtacacatgataagaaagatgat 48935819  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 314
Target Start/End: Original strand, 31799395 - 31799468
Alignment:
Q  239 ggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatattattttatca 314  Q
    ||||| |||||||||||||||| ||||| |||||   |||||| ||||||| ||| |||||| |||||||||||||    
T  31799395 ggataggatagacacttatcatatcatatgtttta--tgcacatatgataagaaatatgatagtattattttatca 31799468  T

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