View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8413_low_7 (Length: 382)
Name: NF8413_low_7
Description: NF8413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8413_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 362
Target Start/End: Original strand, 13975550 - 13975893
Alignment:
| Q |
19 |
attgcctgagagcggtccaatgctttgcgccacagcttatcagcagcaggccgccttctttcaactgccagcatcacgtccgtatgataatttcctgaag |
118 |
Q |
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| T |
13975550 |
attgcctgagagcggtccaatgctttgcgccacagcttatcagcagcaggccgccttctttcaactgccagcatcacgtccatatgataatttcctgaag |
13975649 |
T |
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| Q |
119 |
gctgctggttgttaattcaggatagaaccgatggtttcttgataaaactgtctcacattagttgatatacaagaagatccatggaaaagttgtactatca |
218 |
Q |
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| T |
13975650 |
gccgctggttgttaattcaggatagaaccgatggtttcttgataaaactgtctcacattagttgatatacaagaagatccatggaaaagttgtagtatca |
13975749 |
T |
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| Q |
219 |
gctttctcttgaccgcggattggcaacaatatttatggctgtatcgatgtgttgttttgggtcccttctacattgatttgcttccagcaaggaggtgtat |
318 |
Q |
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| T |
13975750 |
gctttctcttgaccgcggattggcaacaatatttatggctgcatcgatgtgttgttttgggtcccttctacattgatttgcttccagcaaggaggtgtat |
13975849 |
T |
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| Q |
319 |
cttttatcggcttccttgcaatttttcggagcggtatttatttg |
362 |
Q |
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| T |
13975850 |
cttttatcggcttccttgcaatttttcggagctgtatttatttg |
13975893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 116 - 362
Target Start/End: Original strand, 13991682 - 13991925
Alignment:
| Q |
116 |
aaggctgctggttgttaattcaggatagaaccgatggtttcttgataaaactgtctcacattagttgatatacaagaagatccatggaaaagttgtacta |
215 |
Q |
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| T |
13991682 |
aaggctgccggttgttaattcatgatagaatatatggtttcatgataaaactgtctcacattcgttgatatacaagaagatccatggaaaagttgtatta |
13991781 |
T |
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| Q |
216 |
tcagctttctcttgaccgcggattggcaacaatatttatggctgtatcgatgtgttgttttgggtcccttctacattgatttgcttccagcaaggaggtg |
315 |
Q |
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||| ||| ||||||||| |||||||||||||| |||||||||| |||| |||||| |||||||||||||||||||||||||||||||| | ||| ||| |
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| T |
13991782 |
tcacctt--tcttgaccgtggattggcaacaatttttatggctgcatcgttgtgttattttgggtcccttctacattgatttgcttccaac-cggaagtg |
13991878 |
T |
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| Q |
316 |
tatcttttatcggcttccttgcaatttttcggagcggtatttatttg |
362 |
Q |
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| T |
13991879 |
tatcttttatcggcttccttgcaatttttcagagctgtatttatttg |
13991925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 13990625 - 13990683
Alignment:
| Q |
35 |
ccaatgctttgcgccacagcttatcagcagcaggccgccttctttcaactgccagcatc |
93 |
Q |
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| T |
13990625 |
ccaatactttgtgccacatcttatcagcactaagccgccttctttcaactgccaacatc |
13990683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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