View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8413_low_9 (Length: 354)
Name: NF8413_low_9
Description: NF8413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8413_low_9 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 34563607 - 34563254
Alignment:
| Q |
1 |
caatcaaatttagtcaaccattttctttgatatcaaaagattgaagcaatttgttagttttatatatgtcaannnnnnnggattatatgatcggcataga |
100 |
Q |
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| T |
34563607 |
caatcaaatttagtcaaccattttctttgatatcaaaagattggagcaatttgctagttttatatatgtcaaattttttggattatatgatcggcataga |
34563508 |
T |
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| Q |
101 |
ttgggttagaggttttattttctatgactttacatccattctcctaaatgaaagtcatttgttggattagttgggatcgaatgtgtcaaacaaaaaatag |
200 |
Q |
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| T |
34563507 |
ttgggttagaggttttattttctatgactttacatccattctcctaaatgaaagtcatttgttggattagttgggatcgaatgtgtcaaacaaaaaatag |
34563408 |
T |
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| Q |
201 |
tggtgggagagttgtaaaaaatcttgatatgtttaatattgtgttagaggctaagcgaagatggagatttttggttgataaagagataatatggtacaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34563407 |
tggtgggagagttgtaaaaaatcttgatatgtttaatattgtgttagaggctaagcgaagatggaggtttttggttgataaagagataatatggtacaaa |
34563308 |
T |
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| Q |
301 |
ttgttgaattacttaatatgcttctttagacatgcaatattaaatattaatgtg |
354 |
Q |
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| T |
34563307 |
ttgttgaattactcaatatgcttctttaggcatgcaatattaaatattaatgtg |
34563254 |
T |
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