View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8414_high_2 (Length: 498)
Name: NF8414_high_2
Description: NF8414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8414_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 88 - 189
Target Start/End: Original strand, 14992994 - 14993093
Alignment:
| Q |
88 |
ctacatatattatgctcaatgtgtttatttattgagctacgctattcgtagagaataaacaaatcaccaacctttaatgaaagggtctcctacaatttca |
187 |
Q |
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| T |
14992994 |
ctacatatattatgctcaatgt--ttatttattgagctacgctattcgtagagaataaacaaatcatcaacctttaatgaaagggtctcctacaatttca |
14993091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 287 - 468
Target Start/End: Original strand, 14993103 - 14993281
Alignment:
| Q |
287 |
aaagttgtttataacaggcctcacttttatgatttgtaacagataatttttcttttaatttcttctatagtcagaacaaaatatnnnnnnntttaataga |
386 |
Q |
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| T |
14993103 |
aaagttgtttataacaggcctcacttttatgatttgtaacagatattttttcttttaat---ttttatagtcagaacaaaatataaaacaatttaataga |
14993199 |
T |
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| Q |
387 |
acaaatagatacctgaagtcgggtgccttcatgtatatatgtgattgcatagaaacattatcaaaaatccaaagtgctattt |
468 |
Q |
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| T |
14993200 |
acaaatagatacctgaattcgggcgcctccttctatagaagtggttgcaaagaaacatcatcatatttccaaattgctattt |
14993281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 14992640 - 14992689
Alignment:
| Q |
18 |
taatcaacatatctttccgttcaaagaaactattagtacattttcttttg |
67 |
Q |
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| T |
14992640 |
taatcaacatatctttccgttcaaagaaactattagtacattttcttttg |
14992689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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