View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8414_high_4 (Length: 467)
Name: NF8414_high_4
Description: NF8414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8414_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 6964966 - 6964516
Alignment:
| Q |
1 |
agaatgaatgaaatctataacatctggaccacctcctctaacaaattaaagtcaacaaatttatcaa----atatgaatcaagaaatggattctgtgtga |
96 |
Q |
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| T |
6964966 |
agaatgaatgaaatctataacatctggaccacctcctctaacaaattaaagtcaacaaatttatcaatcaaatatgaatcaagaaatggattctgtgtga |
6964867 |
T |
|
| Q |
97 |
attgaaaagatacaagataagaaagttattgaattaaacaagaaagtgaaaggaacatacgagaaagaagtgtaggagtagaaaccaacatccaaacaca |
196 |
Q |
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| T |
6964866 |
attgaaaagatacaagataagaaagttattgaattaaacaagaaagtgaaaggaacatacgagaaagaagtgtaggagtagaaaccaacatccaaacaca |
6964767 |
T |
|
| Q |
197 |
tgaaacaaagagaagcagaagagaaaacaatttgtcccaaacgaagagttaagctagcgcttgttccaaacgctcctggaagttcctccatcatagccta |
296 |
Q |
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| T |
6964766 |
tgaaacaaagagaagcagaagagaaaacaatttgtcccaaacgaagagttaagctagcgcttgttccaaacgctcctggaagttcctccatcatagccta |
6964667 |
T |
|
| Q |
297 |
gcataataatatattccttttttatctttatattatgcaaattgttcaaatcaattatcaatcaatttcaaacatgcccagcnnnnnnnnnnnnnnnnnn |
396 |
Q |
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| T |
6964666 |
gcataataatatattccttttttatctttatattatgcaaattgttcaaatcaattatcaa------tcaaacatgcccagctttttttttttttttttt |
6964573 |
T |
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| Q |
397 |
ncctttctagcaacgtcgatgaaaatcaatgaatgaatgaaaagtggaaataatttg |
453 |
Q |
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| T |
6964572 |
tcctttctagcaacgtcgatcaaaatcaatgaatgaatgaaaagtggaaataatttg |
6964516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 33584943 - 33585055
Alignment:
| Q |
175 |
tagaaaccaacatccaaacacatgaaacaaagagaagcagaagagaaaacaatttgtcccaaacgaagagttaagctagcgcttgttccaaacgctcctg |
274 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||| || ||||| |||| ||||| | ||||| ||||| | ||||||||| ||| | |||| |
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| T |
33584943 |
tagaaatcaacatccaaacacatgaagaaaagagaagcagaggaaaaaacggtttggcccaatctaagagcaaagctggagcttgttcctaacacccctg |
33585042 |
T |
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| Q |
275 |
gaagttcctccat |
287 |
Q |
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| T |
33585043 |
gcaattcctccat |
33585055 |
T |
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