View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8414_high_6 (Length: 436)
Name: NF8414_high_6
Description: NF8414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8414_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 422
Target Start/End: Complemental strand, 41318944 - 41318541
Alignment:
| Q |
13 |
cattattctttacagtaataagcattaaacacaaatgtaatcacgttgcatggcgatgagttgattaataatatgtctgttttcacgttgaaacaattgc |
112 |
Q |
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| T |
41318944 |
cattattctttacagtaataagcattaaacacaaatgtaatcacgttgcatggcgatgagttgattaataatatgtttgttttcacgt-------atgac |
41318852 |
T |
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| Q |
113 |
caaacgtatgaccggaaagaagctgggaattctagagttttaaaatcacggcaatattgcttttggggcgtaagaaaaaagagagaaacgtgaaaacaaa |
212 |
Q |
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| T |
41318851 |
caaatgtatgaccggaaagaagctgggaattctagagttttaaaatcacagcaatattgcttt-ggggcgtaagaaaaaagagagaaacgtgaaaacaaa |
41318753 |
T |
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| Q |
213 |
cacactaaaactattacaggataatctaaacacttggacgggtctatacgacttatatgagattcaaacctcgtagcttagagataagtacaaaattcat |
312 |
Q |
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| T |
41318752 |
cacactaaaactattacaggataatctaaacacttggacgggtctatacgacttatatgagattcaaacctcgtagcttagagataagtacaaaattcat |
41318653 |
T |
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| Q |
313 |
agtatccatctaattaataggcagtcgaattccaaaaactcatc--gagagttaggaattctagcaatcggttcaatcctgagattaaatttgaaccagc |
410 |
Q |
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| T |
41318652 |
agtatccatctaattaataggcagtcggattgcaaaaactcatcaagagagttaggaattctagcagtcggttcaatcctgagattaaatttgaaccagc |
41318553 |
T |
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| Q |
411 |
ggaggaacaaag |
422 |
Q |
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| T |
41318552 |
ggaggaacaaag |
41318541 |
T |
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Back To:
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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 218
Target Start/End: Original strand, 33622080 - 33622207
Alignment:
| Q |
90 |
tgttttcacgttgaaacaattgccaaacgtatgaccggaaagaagctgggaattctagagttttaaaatcacggcaatattgcttttggggcgtaagaaa |
189 |
Q |
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| T |
33622080 |
tgtttccacattgaaacaattgccaaacgtacgaccgaaaagaagttaggaattctagagttatgaaatcacggtgatattgc-tctgagacacgagaaa |
33622178 |
T |
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| Q |
190 |
aaagagagaaacgtgaaaacaaacacact |
218 |
Q |
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| T |
33622179 |
aaagagagaaacatggaaacacacacact |
33622207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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