View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8414_low_6 (Length: 437)
Name: NF8414_low_6
Description: NF8414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8414_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 15 - 342
Target Start/End: Complemental strand, 18728326 - 18727982
Alignment:
| Q |
15 |
gaagaatattgagaagcattttgacaatgctcttggcttcgaagagaaacgggaatccggtaatgaaggtaatgtctatttgaga--------------- |
99 |
Q |
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| T |
18728326 |
gaagaatattgagaagcattttgacaatgctcttggcttcgaagagaaacgggaatccggtaatgaaggtaatctctatttgagatcagtgaatatgctg |
18728227 |
T |
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| Q |
100 |
caggagagtgtgatgaatatcgaaaagaatttcgatactgctcttgaatttgaagagaaaggggaatccaacaatgaaggtaatttctactttttgagat |
199 |
Q |
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| T |
18728226 |
ccggatagtgtgatgaatatcgaaaagaatttcgatactgctcttgaatttgaagagaaaggggaatccaacaatgaaggtaatttctactttttgagat |
18728127 |
T |
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| Q |
200 |
tgttat--tgaatatcttttattttctgaatggattgaagtaagtctgttatgttttgtgcagataggaattttgaatcgttggttttgatgtctgaggt |
297 |
Q |
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| T |
18728126 |
tgttatattgaatatcttttattttctgaatggattgaagtgagtctgttatgttttgtgtagataggaattttgaatcgttggttttgatgtctgaggt |
18728027 |
T |
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| Q |
298 |
ggaatctaatttggtttcacatgacaatggatcaactgttaaaga |
342 |
Q |
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| T |
18728026 |
ggaatctaatttggtttcacatgacaatggatcaactgttaaaga |
18727982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 341 - 420
Target Start/End: Complemental strand, 18727953 - 18727874
Alignment:
| Q |
341 |
gacataaaagagcagcatttgagttctataaaaaatatgtatgactcagattccatacttgagctggagagggtgaagag |
420 |
Q |
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| T |
18727953 |
gacataaaagagcagcatttgagttctataaaaaatatgtatgactcagattccatacttgagctggagagggtgaagag |
18727874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 340 - 420
Target Start/End: Complemental strand, 43753658 - 43753578
Alignment:
| Q |
340 |
agacataaaagagcagcatttgagttctataaaaaatatgtatgactcagattccatacttgagctggagagggtgaagag |
420 |
Q |
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| T |
43753658 |
agacataaaagagcagcatttgagttcaacacaaaatatgcatgactcggattccaaacttgagttggagagggtgaagag |
43753578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 326
Target Start/End: Complemental strand, 43753744 - 43753708
Alignment:
| Q |
290 |
tctgaggtggaatctaatttggtttcacatgacaatg |
326 |
Q |
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| T |
43753744 |
tctgaggtggtatctgatttggtttcacatgacaatg |
43753708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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