View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8415_low_1 (Length: 702)
Name: NF8415_low_1
Description: NF8415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8415_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 324 - 684
Target Start/End: Original strand, 45365871 - 45366232
Alignment:
| Q |
324 |
gtaatagaaacatgcctcaggacaacagggtcccaaaagcattcgttaatcagacaccgattcatcttcatcctatgcannnnnnn-aatcgccacaacc |
422 |
Q |
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| T |
45365871 |
gtaatagaaacatgcctcaggacaccagggtcccaaaagcattcgttaatcagacactgattcatcttcgtcctatgcaccccccccaatcgccacaacc |
45365970 |
T |
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| Q |
423 |
aaactttaatttcgtcaaccaccgccataggatctgtatcccatttgaaaagattataccctttctagctttccaaattacctaaagcattgtacgctat |
522 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45365971 |
aaactttaatttcgtcaaccaccgccaaaggatctgtatcccatttgaaaagattataccctttctagctttccaaattacctaaagcattgtacgctat |
45366070 |
T |
|
| Q |
523 |
ttaaaatttcttgcacgtagctgcccccagttaagcattcaaagagcatgctaagatttggtggtagcatatcataattaagcccaaccaccgaaaaaca |
622 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45366071 |
ttaaaatttcttgcacgtagctgcccccagttaagcattcaaagagcatgctaagatttggtggtagcatatcataattaagcccaaccaccgaaaaaca |
45366170 |
T |
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| Q |
623 |
ctataccaaacaaaagatgcaaaattgcagtggagaaacatatgtacagctgtgtcaaccgt |
684 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45366171 |
ctataccaaacaaaagatgcaaaattgcagtggagaaacatatgtacagctgtgtcaaccgt |
45366232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 17 - 261
Target Start/End: Original strand, 45365563 - 45365808
Alignment:
| Q |
17 |
aaccaactacaaaagaaccaactctacacatgtagctacccaacacaaatgaaccaaaaggccaaagagcagcgctcaaaacggtgaacaattgctcatc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45365563 |
aaccaactacaaaagaaccaactctacacatgtagctacccaacacaaatgaaccaaaaggccaaagagcagcgctcaaaacggtgaacaattgctcatc |
45365662 |
T |
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| Q |
117 |
tcaatacaacctgaaccc-aaaatgagcccagaaactatccaccaaaccatccgaaagcaaaggaaagaaggtcacacgccaactcacaagcagaaaacc |
215 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45365663 |
tcaatacaacctgaaccccaaaatgagcccagaaactatccaccaaaccatccgaaagcaaaggaaagaaggtcacacgccaactcacaagcagaaaacc |
45365762 |
T |
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| Q |
216 |
gaaaccaaataaaagacctccacaaaacctactggcactgaggctt |
261 |
Q |
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| T |
45365763 |
gaaaccaaataaaagacctccacaaaacctactggcactgaggctt |
45365808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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