View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8415_low_2 (Length: 458)
Name: NF8415_low_2
Description: NF8415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8415_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 43934612 - 43934412
Alignment:
| Q |
22 |
agggttaacatcaaaagaaaaatttcaacattgttatctttttcattnnnnnnnctcatcaaatttgtaaacatatcttcatcgtacaaatctagaagtc |
121 |
Q |
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| T |
43934612 |
agggttagcatcaaaagaaaaatttcaacattgttatctttttcattaaaaaa-ctcatcaaatttgtaaacatatcttcatcgtataaatctagaagtc |
43934514 |
T |
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| Q |
122 |
tagattttattaaaaaatctcataaatccatttttctacatcaccttactgagccataaccaaaaccagatacagccataataaaattccaactcgatac |
221 |
Q |
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| T |
43934513 |
tagattttattaaaaaatctcataaatccatttttctacatcaccttactgagccataaccaaaaccaaaaacagccataataaaattccaactcggtac |
43934414 |
T |
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| Q |
222 |
cc |
223 |
Q |
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|| |
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| T |
43934413 |
cc |
43934412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 349
Target Start/End: Complemental strand, 1719922 - 1719863
Alignment:
| Q |
290 |
ttggagtgttgggttgattgatgagtgagaaaatgcagcagatgaagttttgatgaaatt |
349 |
Q |
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| T |
1719922 |
ttggagtgttaggttgattgatgagagagaaaatgaagaagataaagttttgatgaaatt |
1719863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 349
Target Start/End: Original strand, 2723431 - 2723496
Alignment:
| Q |
284 |
atgttcttggagtgttgggttgattgatgagtgagaaaatgcagcagatgaagttttgatgaaatt |
349 |
Q |
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| T |
2723431 |
atgttgttggagtgttaggttgattgatgagagaaaaactaaaaaagatgaagttttgatgaaatt |
2723496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 349
Target Start/End: Original strand, 43161435 - 43161506
Alignment:
| Q |
278 |
cctttgatgttcttggagtgttgggttgattgatgagtgagaaaatgcagcagatgaagttttgatgaaatt |
349 |
Q |
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| T |
43161435 |
ccttttatgttgttggagtgctaggttgattgacgagagagaaaatgaagaagatgaagttttgatgaaatt |
43161506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 323
Target Start/End: Complemental strand, 17174659 - 17174617
Alignment:
| Q |
281 |
ttgatgttcttggagtgttgggttgattgatgagtgagaaaat |
323 |
Q |
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| T |
17174659 |
ttgatgttgttggagtgttaggttgattgatgagagagaaaat |
17174617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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