View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8416_high_1 (Length: 308)
Name: NF8416_high_1
Description: NF8416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8416_high_1 |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 21781534 - 21781242
Alignment:
| Q |
1 |
taataaaacaaacagaataatgtata--ctgtatatatataaacactagctattaggatatggatcatactatgttttccatggctctactagtcatcta |
98 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
21781534 |
taataaaacaaacagaataatgtatatactgtatatatataaacactagctattaggatatggatcatactatgttttccatggctcttctagttctcta |
21781435 |
T |
|
| Q |
99 |
cttgccatatattttctcctctcttcttttaatccttgtagtacaaaagatacgaaagaagaaaagttactcgacttataacataccgccagggcctaga |
198 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21781434 |
cttgccatatattttctcctctcttctcttaatccttatagtacaaaagatacgaaagaaaaaaagttactcgacttataacataccgccagggcctaga |
21781335 |
T |
|
| Q |
199 |
aagttacctattataggaaatatacacaatctgttaagctctcaacccaatcgaagattaagagacttggccaaaaaatatggaccagtgatg |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21781334 |
aagttacctattataggaaatatacacaatctgttaagctctcaacccaatcgaagattaagagacttggccaaaaaatatggaccagtgatg |
21781242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 30 - 284
Target Start/End: Complemental strand, 23040613 - 23040359
Alignment:
| Q |
30 |
tatatatataaacactagctattaggatatggatcatactatgttttccatggctctactagtcatctacttgccatatattttctcctctcttctttta |
129 |
Q |
| |
|
|||||||||| |||||||||| |||||| | | ||| ||||| || |||||||||||||| || |||||||||||||||||||||||| | | || ||| |
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| T |
23040613 |
tatatatatagacactagctagtaggatttagttcaaactattttagccatggctctactaatcctctacttgccatatattttctcctttatcctctta |
23040514 |
T |
|
| Q |
130 |
atccttgtagtacaaaagatacgaaagaagaaaagttactcgacttataacataccgccagggcctagaaagttacctattataggaaatatacacaatc |
229 |
Q |
| |
|
| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23040513 |
acccttgtagtacaaaagataggaaacaagaaaagttactcgacttataacataccaccagggcctataaagttacctattataggaaatatacacaatc |
23040414 |
T |
|
| Q |
230 |
tgttaagctctcaacccaatcgaagattaagagacttggccaaaaaatatggacc |
284 |
Q |
| |
|
|||||| |||||||||| |||||| | |||||||||||||||||||||||||||| |
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|
| T |
23040413 |
tgttaacctctcaaccccatcgaaaactaagagacttggccaaaaaatatggacc |
23040359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 27 - 291
Target Start/End: Complemental strand, 23147491 - 23147227
Alignment:
| Q |
27 |
ctgtatatatataaacactagctattaggatatggatcatactatgttttccatggctctactagtcatctacttgccatatattttctcctctcttctt |
126 |
Q |
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|
||||||||||| | | ||| |||| |||||||| | ||| ||||| | |||||||||||||||||| ||||||||||||||||||||| || | | || |
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|
| T |
23147491 |
ctgtatatataaagatactggctagtaggatatagttcaaactatcctatccatggctctactagtcctctacttgccatatattttcttctttatcctc |
23147392 |
T |
|
| Q |
127 |
ttaatccttgtagtacaaaagatacgaaagaagaaaagttactcgacttataacataccgccagggcctagaaagttacctattataggaaatatacaca |
226 |
Q |
| |
|
|||| |||| |||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
23147391 |
ttaacccttatagtacaaaagataagaaagaagaaaagttactcggcttataacataccgcctgggcctagaaagttaccaattataggaaatatacaca |
23147292 |
T |
|
| Q |
227 |
atctgttaagctctcaacccaatcgaagattaagagacttggccaaaaaatatggaccagtgatg |
291 |
Q |
| |
|
|||||||||||||||||||| ||| || ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
23147291 |
atctgttaagctctcaaccccatcaaaaattaagagacttggcgaaaaaatatggaccagtgatg |
23147227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 41 - 291
Target Start/End: Complemental strand, 23037725 - 23037475
Alignment:
| Q |
41 |
acactagctattaggatatggatcatactatgttttccatggctctactagtcatctacttgccatatattttctcctctcttcttttaatccttgtagt |
140 |
Q |
| |
|
|||||| ||| ||||||||| |||| |||| | |||||||||||| |||| |||||||||||||| ||||||||| | | || |||| |||| |||| |
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| T |
23037725 |
acactaactagtaggatatgcttcattctatcctatccatggctctaatagttctctacttgccatattttttctcctttttcctcttaacccttatagt |
23037626 |
T |
|
| Q |
141 |
acaaaagatacgaaagaagaaaagttactcgacttataacataccgccagggcctagaaagttacctattataggaaatatacacaatctgttaagctct |
240 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23037625 |
acaaaagataagaaagaagaaaagttactcgatttataacatgccaccagggcctataaagttacctattataggaaatatacacaatctgttaagctct |
23037526 |
T |
|
| Q |
241 |
caacccaatcgaagattaagagacttggccaaaaaatatggaccagtgatg |
291 |
Q |
| |
|
|||||| || | | ||||||||||||||||||||||||||||||||||||| |
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| T |
23037525 |
caaccccataggaaattaagagacttggccaaaaaatatggaccagtgatg |
23037475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 189 - 284
Target Start/End: Complemental strand, 23018663 - 23018568
Alignment:
| Q |
189 |
agggcctagaaagttacctattataggaaatatacacaatctgttaagctctcaacccaatcgaagattaagagacttggccaaaaaatatggacc |
284 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| || ||| |||||| ||||||||||||||||||||||| |
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|
| T |
23018663 |
agggcctagaaagctacctattataggaaatatacacaatcttctaagctctcaaccccatagaaaattaagtgacttggccaaaaaatatggacc |
23018568 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 193 - 284
Target Start/End: Complemental strand, 23025676 - 23025585
Alignment:
| Q |
193 |
cctagaaagttacctattataggaaatatacacaatctgttaagctctcaacccaatcgaagattaagagacttggccaaaaaatatggacc |
284 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||| | || |||||||||| | | |||||||||| |
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|
| T |
23025676 |
cctagaaagctaccaattataggaaatatacacaatctgttaagctctcaaccacatcgaaaactacgagacttggcaagagaatatggacc |
23025585 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 284
Target Start/End: Complemental strand, 23141677 - 23141582
Alignment:
| Q |
189 |
agggcctagaaagttacctattataggaaatatacacaatctgttaagctctcaacccaatcgaagattaagagacttggccaaaaaatatggacc |
284 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| |||||||||||||||| |||||||| || || | ||||||| ||||| | |||||||||||| |
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|
| T |
23141677 |
agggcctataaagctacctattataggaaatttacacaatctgttaagttctcaaccacataaaaaactaagagatttggctagaaaatatggacc |
23141582 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 23141799 - 23141754
Alignment:
| Q |
73 |
ttttccatggctctactagtcatctacttgccatatattttctcct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
23141799 |
ttttccatggctctactagtcatctacttgtcatatattttctcct |
23141754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 284
Target Start/End: Complemental strand, 23150287 - 23150192
Alignment:
| Q |
189 |
agggcctagaaagttacctattataggaaatatacacaatctgttaagctctcaacccaatcgaagattaagagacttggccaaaaaatatggacc |
284 |
Q |
| |
|
|||||||| |||| |||| ||||| |||||| |||||||||||||||| |||||||| ||| || | ||||||| ||||| | |||||||||||| |
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|
| T |
23150287 |
agggcctataaagctaccaattattggaaatttacacaatctgttaagttctcaaccacatcaaaaactaagagatttggctagaaaatatggacc |
23150192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 159
Target Start/End: Complemental strand, 23025799 - 23025713
Alignment:
| Q |
73 |
ttttccatggctctactagtcatctacttgccatatattttctcctctcttcttttaatccttgtagtacaaaagatacgaaagaag |
159 |
Q |
| |
|
|||||||||||| |||||||| |||||||| |||||||||||| || | |||| ||| | |||| |||||||| || |||||||| |
|
|
| T |
23025799 |
ttttccatggctttactagtcctctacttgtcatatattttcttctttattctcttagccattgttgtacaaaaagtaggaaagaag |
23025713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 23018785 - 23018740
Alignment:
| Q |
73 |
ttttccatggctctactagtcatctacttgccatatattttctcct |
118 |
Q |
| |
|
||||||||||||||||||| | |||||||| ||||| ||||||||| |
|
|
| T |
23018785 |
ttttccatggctctactagccctctacttgtcatatcttttctcct |
23018740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 189 - 291
Target Start/End: Original strand, 5109 - 5211
Alignment:
| Q |
189 |
agggcctagaaagttacctattataggaaatatacacaatctgttaagctctcaacccaatcgaagattaagagacttggccaaaaaatatggaccagtg |
288 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||| || |||||||||||||| || | | |||||| ||||||||||||||||||||||| ||| |
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|
| T |
5109 |
agggcctagaaagctacctattataggaaatattcacaatttgctaagctctcaaccccataggaaattaagtgacttggccaaaaaatatggacccgtg |
5208 |
T |
|
| Q |
289 |
atg |
291 |
Q |
| |
|
||| |
|
|
| T |
5209 |
atg |
5211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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