View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8417_high_10 (Length: 362)
Name: NF8417_high_10
Description: NF8417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8417_high_10 |
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| [»] scaffold0136 (2 HSPs) |
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Alignment Details
Target: scaffold0136 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 237 - 356
Target Start/End: Original strand, 20259 - 20378
Alignment:
| Q |
237 |
ggaaccagagcacaagaaaaatattgtgtaggtggtcctaaaaataaagagaaagcgataatagtgtctttctttagtaaaaggtgactctgagttttcc |
336 |
Q |
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| T |
20259 |
ggaactagagcacaagaaaaatattgtgtaggtggtcctaaaaataaagaaaaagcgataatagtgtctttctttagtaaaaggtgactctgagttttcc |
20358 |
T |
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| Q |
337 |
cgtgaaacataaacaccaaa |
356 |
Q |
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| T |
20359 |
cgtgaaacataaacaccaaa |
20378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0136; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 20022 - 20152
Alignment:
| Q |
16 |
tgtttcactaaacccgcattagttttattgtgaacccctctctttt--agagattcacaaagttgcagactttgaataagtgtgtatattgacattttaa |
113 |
Q |
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| T |
20022 |
tgtttcactaaacccacattagttttattgtgaacccctctcttttttagagattcacaaagttgcagactttgaataagtgtgtatattgacattttaa |
20121 |
T |
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| Q |
114 |
ggaacaataagaacttcattaataatcataa |
144 |
Q |
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| T |
20122 |
ggaacaataagaacttcaatagtaatcataa |
20152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 45770217 - 45770086
Alignment:
| Q |
24 |
taaacccgcattagttttattgtgaacccctctcttttagagattcacaaagttgcagactttgaataagtgtgtatattgacattttaaggaacaataa |
123 |
Q |
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| T |
45770217 |
taaacccgcataagttttattgtgaactcttctcttttggagaatcacaaagttgcagatattgaataagtgtgtcaataggcattttaaggaacaataa |
45770118 |
T |
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| Q |
124 |
gaacttcattaataatcataactttaaaattt |
155 |
Q |
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| T |
45770117 |
gaactttggtagtaaacataactgtaaaattt |
45770086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 841371 - 841483
Alignment:
| Q |
16 |
tgtttcactaaacccgcattagttttattgtgaacccctctcttttagagattcacaaagttgcagactttgaataagtgtgtatattgacattttaagg |
115 |
Q |
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| T |
841371 |
tgtttcactaaactcacataagttttattgtgaacccgtctattt-agagattcacaaagttgcagactttgagtaaatgggtctattgacattttcagg |
841469 |
T |
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| Q |
116 |
aacaataagaactt |
129 |
Q |
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| T |
841470 |
aacaagaaggactt |
841483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 268 - 334
Target Start/End: Original strand, 841625 - 841691
Alignment:
| Q |
268 |
gtggtcctaaaaataaagagaaagcgataatagtgtctttctttagtaaaaggtgactctgagtttt |
334 |
Q |
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| T |
841625 |
gtggtcctaaaaatagagagaaagtgataacaatgtctttctttaataaaaagtgactctgagtttt |
841691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 20644792 - 20644712
Alignment:
| Q |
16 |
tgtttcactaaacccgcattagttttattgtgaacccctctcttttagagattcac-aaagttgcagactttgaataagtg |
95 |
Q |
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| T |
20644792 |
tgtttcactaaacccacatcagttttattgtgaaccattctcttttagagattcacaaaagttacagactttaagtaagtg |
20644712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 15205842 - 15205902
Alignment:
| Q |
36 |
agttttattgtgaacccctctcttttagagattcacaaagttgcagactttgaataagtgt |
96 |
Q |
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| T |
15205842 |
agtttcattgtgaacctttctctttgagaatttcataaagttgcagtctttgaataagtgt |
15205902 |
T |
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