View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8417_high_12 (Length: 316)

Name: NF8417_high_12
Description: NF8417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8417_high_12
NF8417_high_12
[»] chr1 (17 HSPs)
chr1 (1-297)||(4323008-4323304)
chr1 (1-279)||(4334913-4335203)
chr1 (39-158)||(2948501-2948620)
chr1 (39-158)||(3340386-3340505)
chr1 (11-158)||(3349232-3349379)
chr1 (48-170)||(3345180-3345302)
chr1 (38-153)||(3378614-3378726)
chr1 (103-163)||(3361660-3361720)
chr1 (81-166)||(6601784-6601869)
chr1 (39-158)||(9818943-9819062)
chr1 (120-166)||(2010508-2010554)
chr1 (120-166)||(2019721-2019767)
chr1 (103-164)||(3372632-3372693)
chr1 (120-163)||(2006419-2006462)
chr1 (125-166)||(2011923-2011964)
chr1 (81-166)||(6592532-6592617)
chr1 (119-163)||(3218548-3218592)
[»] chr2 (5 HSPs)
chr2 (11-281)||(20926926-20927193)
chr2 (89-278)||(20952926-20953112)
chr2 (11-265)||(39273899-39274156)
chr2 (11-283)||(20934310-20934579)
chr2 (11-166)||(20923327-20923482)
[»] chr5 (2 HSPs)
chr5 (39-158)||(17969739-17969858)
chr5 (208-267)||(17969911-17969970)
[»] chr4 (1 HSPs)
chr4 (103-153)||(21237477-21237527)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 4323304 - 4323008
Alignment:
Q  1 gtcgagtaattggaggaaaaaatggtatacacttccgaatcttgtgcttgatagacaatgtgtgtctgctgaagcttcccaagaccctttagttattgag 100  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4323304 gtcgaggaattggaggaaaaaatggtatacacttccaaatcttgtgcttgatagacaatgtgtgtctgctgaagcttcccaagaccctttagttattgag 4323205  T
Q  101 cgcaagttttcgaaaatggttgatcatgtacttttacttcattctgggccaatcaacatgttcaagttctgtaactatgatctccctggtgaggggagtc 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4323204 cccaagttttcgaaaatggttgatcatgtacttttacttcattctgggccaatcaacatgttcaagttctgtaactatgatctccctggtgaggggagtc 4323105  T
Q  201 ttgtgagtgacgttgatcggtggattctttatctaattggaaggtctattaaagagcttgtgctggaagtttggatagaggaagaatactaccagat 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4323104 ttgtgagtgacgttgatcggtggattctttatctaattggaaggtctattaaagagcttgtgctggaagtttggatagaggaagaatactaccagat 4323008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 4335203 - 4334913
Alignment:
Q  1 gtcgagtaattggaggaaaaaatggtatacacttccgaatcttgtgcttgatagacaatgtgt----gtc--tgctgaagcttcccaagaccctttag-- 92  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||  |||||| | ||  |||    |||  ||||| | | |||  |||||||||||      
T  4335203 gtcgaggaattggaggaaaaaatggtatacacttccaaatcttgtatttgatacaaaacttgtccctgtccctgctgcaacatccggagaccctttagct 4335104  T
Q  93 -ttattgagcgcaagttttcgaaaatggttgatcatgtacttttacttcattctgggccaatcaacatgttcaagttctgtaact---atgatctccctg 188  Q
     |||||||   |||||||| | |||| |||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||    ||||||||   |    
T  4335103 attattgacaacaagtttttgcaaattgttgatcatgtacttttagttcattctggaccaatcaacatgttcaagttctctaacgttgatgatctcatgg 4335004  T
Q  189 gtgaggggagtcttgtgagtgacgttgatcggtggattctttatctaattggaaggtctattaaagagcttgtgctggaagtttggataga 279  Q
    | ||||  |||||||||| | || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4335003 gcgaggatagtcttgtgactaacattgatcggtggattcttcatctaattggaaggtctattaaagagcttgtgttggaagtttggataga 4334913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 2948620 - 2948501
Alignment:
Q  39 atcttgtgcttgatagacaatgtgtgtctgctgaagcttcccaagaccctttagttattgagcgcaagttttcgaaaatggttgatcatgtacttttact 138  Q
    |||||||| ||||||| | |||||| ||| ||| |  |||| ||||||||| |||||||||| ||||||||| || ||| ||||||||||||||||||||    
T  2948620 atcttgtgtttgatagtcgatgtgtatctactgcaatttccaaagacccttcagttattgagagcaagtttttgagaattgttgatcatgtacttttact 2948521  T
Q  139 tcattctgggccaatcaaca 158  Q
    ||||||||||||||||||||    
T  2948520 tcattctgggccaatcaaca 2948501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 158
Target Start/End: Original strand, 3340386 - 3340505
Alignment:
Q  39 atcttgtgcttgatagacaatgtgtgtctgctgaagcttcccaagaccctttagttattgagcgcaagttttcgaaaatggttgatcatgtacttttact 138  Q
    |||||||| ||||| |  ||||||| ||| ||||| ||||| || |||||| |||||||||| |||||||||  | ||| ||||||||||||||||||||    
T  3340386 atcttgtgtttgatcgtgaatgtgtatctactgaaacttccaaacacccttcagttattgagagcaagtttttaagaattgttgatcatgtacttttact 3340485  T
Q  139 tcattctgggccaatcaaca 158  Q
    ||||||||||||||||||||    
T  3340486 tcattctgggccaatcaaca 3340505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 158
Target Start/End: Original strand, 3349232 - 3349379
Alignment:
Q  11 tggaggaaaaaatggtatacacttccgaatcttgtgcttgatagacaatgtgtgtctgctgaagcttcccaagaccctttagttattgagcgcaagtttt 110  Q
    |||||||| |||||||  ||||| ||  |||||||| ||||||| | |||||| ||| ||||| |||||| | | |||| |||||||||| |||||||||    
T  3349232 tggaggaagaaatggtccacactaccagatcttgtgtttgatagtctatgtgtatctactgaaacttccctaaaaccttcagttattgagagcaagtttt 3349331  T
Q  111 cgaaaatggttgatcatgtacttttacttcattctgggccaatcaaca 158  Q
     || |||  |||||||||||||||||||||||||||||| ||||||||    
T  3349332 tgagaattattgatcatgtacttttacttcattctgggctaatcaaca 3349379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 48 - 170
Target Start/End: Complemental strand, 3345302 - 3345180
Alignment:
Q  48 ttgatagacaatgtgtgtctgctgaagcttcccaagaccctttagttattgagcgcaagttttcgaaaatggttgatcatgtacttttacttcattctgg 147  Q
    |||||||||||| ||| ||| | | |||||||||||| |||||||| | |||| |||||| || |||||| ||| ||||||| | ||||||||||| |||    
T  3345302 ttgatagacaatctgtctctacagcagcttcccaagaacctttagtcactgagagcaagtgtttgaaaattgttaatcatgtgcatttacttcattttgg 3345203  T
Q  148 gccaatcaacatgttcaagttct 170  Q
    | |||| |||||||| |||||||    
T  3345202 gacaataaacatgtttaagttct 3345180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 153
Target Start/End: Original strand, 3378614 - 3378726
Alignment:
Q  38 aatcttgtgcttgatagacaatgtgtgtctgctgaagcttcccaagaccctttagttattgagcgcaagttttcgaaaatggttgatcatgtacttttac 137  Q
    |||||| |||||| |||||||||||| |||    |||||||||||| |||||  ||||| ||| ||||||||| || |||  | ||||||||||||||||    
T  3378614 aatcttatgcttggtagacaatgtgtctctc---aagcttcccaaggcccttcggttatcgagagcaagtttttgagaattatcgatcatgtacttttac 3378710  T
Q  138 ttcattctgggccaat 153  Q
    ||||||||||||||||    
T  3378711 ttcattctgggccaat 3378726  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 3361660 - 3361720
Alignment:
Q  103 caagttttcgaaaatggttgatcatgtacttttacttcattctgggccaatcaacatgttc 163  Q
    |||||||| || ||| ||||||||||||||||||||||||| |||||||||||||| ||||    
T  3361660 caagtttttgagaattgttgatcatgtacttttacttcattatgggccaatcaacaagttc 3361720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 6601869 - 6601784
Alignment:
Q  81 aagaccctttagttattgagcgcaagttttcgaaaatggttgatcatgtacttttacttcattctgggccaatcaacatgttcaag 166  Q
    |||||| |||||||||  || ||||  |||||| |||  ||||||||||||||||||| ||||||||||||||||| | |||||||    
T  6601869 aagaccttttagttatcaagagcaaactttcgagaattattgatcatgtacttttactccattctgggccaatcaaaaagttcaag 6601784  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 9819062 - 9818943
Alignment:
Q  39 atcttgtgcttgatagacaatgtgtgtctgctgaagcttcccaagaccctttagttattgagcgcaagttttcgaaaatggttgatcatgtacttttact 138  Q
    |||||||| ||||||| | |||||| ||| | | | | ||| || ||||||  ||| ||||| | ||||||| || |||  |||||||||||||||||||    
T  9819062 atcttgtgtttgatagtcgatgtgtatctacggcaacctccgaaaacccttcggttgttgagagaaagtttttgagaattattgatcatgtacttttact 9818963  T
Q  139 tcattctgggccaatcaaca 158  Q
    |||||| |||||||||||||    
T  9818962 tcattccgggccaatcaaca 9818943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 2010508 - 2010554
Alignment:
Q  120 ttgatcatgtacttttacttcattctgggccaatcaacatgttcaag 166  Q
    |||||||||||||||||||| |||| ||||||||||||| |||||||    
T  2010508 ttgatcatgtacttttactttattccgggccaatcaacaagttcaag 2010554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 2019721 - 2019767
Alignment:
Q  120 ttgatcatgtacttttacttcattctgggccaatcaacatgttcaag 166  Q
    |||||||||||||||||||| |||| ||||||||||||| |||||||    
T  2019721 ttgatcatgtacttttactttattccgggccaatcaacaagttcaag 2019767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 3372632 - 3372693
Alignment:
Q  103 caagttttcgaaaatggttgatcatgtacttttacttcattctgggccaatcaacatgttca 164  Q
    |||||||| || ||| |||||||||||||||||||  |||||||| |||||||||| |||||    
T  3372632 caagtttttgagaattgttgatcatgtacttttacaacattctggtccaatcaacaagttca 3372693  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 2006419 - 2006462
Alignment:
Q  120 ttgatcatgtacttttacttcattctgggccaatcaacatgttc 163  Q
    ||||||| |||||||||||| |||||||||||||||||| ||||    
T  2006419 ttgatcaggtacttttactttattctgggccaatcaacaagttc 2006462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 2011923 - 2011964
Alignment:
Q  125 catgtacttttacttcattctgggccaatcaacatgttcaag 166  Q
    ||||||||||||||| ||| |||||||||||||| |||||||    
T  2011923 catgtacttttactttattatgggccaatcaacaagttcaag 2011964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 6592617 - 6592532
Alignment:
Q  81 aagaccctttagttattgagcgcaagttttcgaaaatggttgatcatgtacttttacttcattctgggccaatcaacatgttcaag 166  Q
    |||||| |||||||||  || ||||| |||| | |||  ||||||||||||||||||| | |||||| |||||||| | |||||||    
T  6592617 aagaccttttagttatcaagagcaagctttcaagaattattgatcatgtacttttactccgttctggaccaatcaaaaagttcaag 6592532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 3218592 - 3218548
Alignment:
Q  119 gttgatcatgtacttttacttcattctgggccaatcaacatgttc 163  Q
    ||||||||||||||| ||||||||||||| || ||||||| ||||    
T  3218592 gttgatcatgtacttctacttcattctggaccgatcaacaagttc 3218548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 20926926 - 20927193
Alignment:
Q  11 tggaggaaaaaatggtatacacttccgaatcttgtgcttgatagacaatgtgtgtctgctgaagcttcccaagaccctttagttattgagcgcaagtttt 110  Q
    |||||||| ||| |||| ||||| || ||||||||  ||||||| |||||||| ||||||| ||||||| ||||||  |||||||| |   | |||||||    
T  20926926 tggaggaacaaagggtacacactaccaaatcttgtctttgatagtcaatgtgtctctgctgcagcttccaaagacctgttagttatcgctaggaagtttt 20927025  T
Q  111 cgaaaatggttgatcatgtacttttacttcattctgggccaatcaacatgttcaagttctgtaactatgatctccctggtgaggggagtcttgtgagtga 210  Q
     |||| | | ||||||||| ||||||||||||| |||||||||||||||||||||||||| | | | || ||||  || |||   ||||||||||  |||    
T  20927026 tgaaatttgctgatcatgtccttttacttcattatgggccaatcaacatgttcaagttctctgagtgtgctctcattgatga---gagtcttgtgtctga 20927122  T
Q  211 cgttgatcggtggattctttatctaattggaaggtctattaaagagcttgtgctggaagtttggatagagg 281  Q
     ||||||| |||||||||| |||||| | |||| |||||||||||||||||||||||||||||||||||||    
T  20927123 tgttgatcagtggattcttcatctaactagaagctctattaaagagcttgtgctggaagtttggatagagg 20927193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 89 - 278
Target Start/End: Original strand, 20952926 - 20953112
Alignment:
Q  89 ttagttattgagcgcaagttttcgaaaatggttgatcatgtacttttacttcattctgggccaatcaacatgttcaagttctgtaactatgatctccctg 188  Q
    |||||||||||| | ||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |  |  |||||  ||    
T  20952926 ttagttattgagaggaagttattgaaaattgttgatcatgtacttttacttcattctgggccaatcaacatgttcaagttctatgatgaacatctcattg 20953025  T
Q  189 gtgaggggagtcttgtgagtgacgttgatcggtggattctttatctaattggaaggtctattaaagagcttgtgctggaagtttggatag 278  Q
    ||||   |||| || |||||||  ||||||||||||||||| |||||| | |||| ||||||||||||||||||||| || |||||||||    
T  20953026 gtga---gagttttctgagtgatattgatcggtggattcttcatctaactagaagctctattaaagagcttgtgctgaaattttggatag 20953112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 39273899 - 39274156
Alignment:
Q  11 tggaggaaaaaatggtatacacttccgaatcttgtgcttgatagacaatgtgtgtctgctgaagcttcccaagaccctttagttattgagcgcaagtttt 110  Q
    |||||| | |||||||| ||||| || ||||||||| |||||||||  ||||| ||||||  || ||||||||||||||||| |||||||  |||| |||    
T  39273899 tggaggtacaaatggtacacactaccaaatcttgtgtttgatagacgttgtgtctctgctagaggttcccaagaccctttagatattgagaacaagcttt 39273998  T
Q  111 cgaaaatggttgatcatgtacttttacttcattctgggccaatcaacatgttcaagttctgtaactatgatctccct---ggtgaggggagtcttgtgag 207  Q
     |||||| ||||||||||||||||||||||| ||||| || ||||||| |||| |||||| | ||| || ||    |   | ||| |||| || || ||     
T  39273999 tgaaaattgttgatcatgtacttttacttcactctggacctatcaacaagttcgagttctctgactctggtcaggatttcgttgaagggattcctgggaa 39274098  T
Q  208 tgacgttgatcggtggattctttatctaattggaaggtctattaaagagcttgtgctg 265  Q
    |||  |||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  39274099 tgaatttgatcggtggattgtttatctaatcggaaggtctattaaagagcttgtgctg 39274156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 283
Target Start/End: Original strand, 20934310 - 20934579
Alignment:
Q  11 tggaggaaaaaatggtatacacttccgaatcttgtgcttgatagacaatgtgtgtctgctgaagcttcccaagaccctttagttattgagcgcaagtttt 110  Q
    |||||||| |||||||| ||||| || ||||||||| |||||||||||||| | ||||||| ||||| | ||||| | ||||||||| ||   || ||||    
T  20934310 tggaggaacaaatggtacacactcccaaatcttgtgtttgatagacaatgtctctctgctgcagcttacgaagacacgttagttattcagatgaaatttt 20934409  T
Q  111 cgaaaatggttgatcatgtacttttacttcattctgggccaatcaacatgttcaagttctgtaactatgatctccctggtgaggggagtcttgtgagtga 210  Q
     |||||| ||| ||  ||||||||||| ||||||||||||||||||||| |||||||||| ||  | || || |  || |||   ||||||||||   ||    
T  20934410 tgaaaattgttaatagtgtacttttacatcattctgggccaatcaacatattcaagttctctatgtgtgctcccattgatga---gagtcttgtgtccga 20934506  T
Q  211 cgttgatcggtggattctttatctaattggaaggtctattaaagagcttgtgctggaagtttggatagaggaa 283  Q
     ||||||| ||||||||| ||||||| | | | |||||||||||||||||||||||| ||||| | |||||||    
T  20934507 tgttgatcagtggattctatatctaagtaggaagtctattaaagagcttgtgctggatgtttgtacagaggaa 20934579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 20923327 - 20923482
Alignment:
Q  11 tggaggaaaaaatggtatacacttccgaatcttgtgcttgatagacaatgtgtgtctgctgaagcttcccaagaccctttagttattgagcgcaagtttt 110  Q
    ||||||||||||||||  ||||  ||| |||||||| | |||| ||||||||| ||||||| || |||| |||| ||||  ||||| |||  |||||||     
T  20923327 tggaggaaaaaatggtccacacaaccggatcttgtgttcgataaacaatgtgtatctgctgcagtttccgaagatccttctgttatcgagaacaagtttg 20923426  T
Q  111 cgaaaatggttgatcatgtacttttacttcattctgggccaatcaacatgttcaag 166  Q
     ||  |  ||||| |||||||||||||||||||||||||||||||||| |||||||    
T  20923427 tgaggactgttgaccatgtacttttacttcattctgggccaatcaacaagttcaag 20923482  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 158
Target Start/End: Original strand, 17969739 - 17969858
Alignment:
Q  39 atcttgtgcttgatagacaatgtgtgtctgctgaagcttcccaagaccctttagttattgagcgcaagttttcgaaaatggttgatcatgtacttttact 138  Q
    |||||||| |||||||||||||||| ||| ||| ||||||| |||||  || |||||| ||| ||||||||| || |||  |||||||||||||||||||    
T  17969739 atcttgtgtttgatagacaatgtgtatctactgtagcttccgaagacttttcagttatcgagggcaagtttttgagaatcattgatcatgtacttttact 17969838  T
Q  139 tcattctgggccaatcaaca 158  Q
    |||||| |||||||||||||    
T  17969839 tcattcagggccaatcaaca 17969858  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 17969911 - 17969970
Alignment:
Q  208 tgacgttgatcggtggattctttatctaattggaaggtctattaaagagcttgtgctgga 267  Q
    ||| |||||||||||||||||| |||||| |||||| ||| |||||||||||||| ||||    
T  17969911 tgatgttgatcggtggattcttcatctaactggaagatctgttaaagagcttgtgttgga 17969970  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 21237477 - 21237527
Alignment:
Q  103 caagttttcgaaaatggttgatcatgtacttttacttcattctgggccaat 153  Q
    |||||||| || ||| ||||||||||||||| |||||||||||||| ||||    
T  21237477 caagtttttgagaattgttgatcatgtacttctacttcattctgggtcaat 21237527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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