View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8417_high_14 (Length: 275)
Name: NF8417_high_14
Description: NF8417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8417_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 55988962 - 55989177
Alignment:
| Q |
18 |
aaagacttccctaaccgcagacgagatgtcaggctcgaccagtggtgaattcttgtgacgtattttgttatgcttggaagcagctttctgagcaagcttc |
117 |
Q |
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| T |
55988962 |
aaagacttccctaaccgcagacgagatgtcaggctcgaccagtggtgaattcttgtgacgtattttattatgcttggaagcagctttctgagcaagcttc |
55989061 |
T |
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| Q |
118 |
aaaaatcatgtctgttaagatagtgttcatcatcatattaatggcctcagcagatatagcaatgtcagggtgcaccttcttcagaacttggtagatgtat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
55989062 |
aaaaatcatgtctgttaagatagtgttcatcatcatattaatggcctcagcagatatagcaatgtcaggttgcaccttcttcagaacttggtagatgtat |
55989161 |
T |
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| Q |
218 |
ctgttcaactttaaca |
233 |
Q |
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|||||||||||||||| |
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| T |
55989162 |
ctgttcaactttaaca |
55989177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 55324950 - 55325158
Alignment:
| Q |
18 |
aaagacttccctaaccgcagacgagatgtcaggctcgaccagtggtgaattcttgtgacgtattttgttatgcttggaagcagctttctgagcaagcttc |
117 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
55324950 |
aaagacttccctaaccgcagcggagatgtcaggctcgaccagtggtgaattcttgtgacgtattttgttatgcttcga---agctttctgagcaagcttc |
55325046 |
T |
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| Q |
118 |
aaaaatcatgtctgttaagatagtgttcatcatcatattaatggcctcagcagatatagcaatgtcagggtgcaccttcttcagaacttggtagatgtat |
217 |
Q |
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| T |
55325047 |
-aacatcatgtctgttaagatagtgttcatca--at-tccacagccccggcagatatagcaatgtcagggtgaaccttcttcagaacttcgtagatgaat |
55325142 |
T |
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| Q |
218 |
ctgttcaactttaaca |
233 |
Q |
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||||||||||||||| |
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| T |
55325143 |
ttgttcaactttaaca |
55325158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 55972710 - 55972918
Alignment:
| Q |
18 |
aaagacttccctaaccgcagacgagatgtcaggctcgaccagtggtgaattcttgtgacgtattttgttatgcttggaagcagctttctgagcaagcttc |
117 |
Q |
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||||||||| | ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
55972710 |
aaagacttcacaaaccgtagcggatatgtcaggctcgaccagtggtgaattcttgtgacgtattttgttatgcttggaagc---tttctgagcaagcttc |
55972806 |
T |
|
| Q |
118 |
aaaaatcatgtctgttaagatagtgttcatcatcatattaatggcctcagcagatatagcaatgtcagggtgcaccttcttcagaacttggtagatgtat |
217 |
Q |
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|| | |||||||||||| | |||||||||||| || | ||| ||| |||| |||||||||||||| || |||||||| ||||||| |||||||||| |
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| T |
55972807 |
aaca-tcatgtctgttataagagtgttcatcat---atccagggcttcaccagagatagcaatgtcaggatgaaccttcttaagaacttagtagatgtat |
55972902 |
T |
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| Q |
218 |
ctgttcaactttaaca |
233 |
Q |
| |
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|||| |||||||||| |
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| T |
55972903 |
ttgttaaactttaaca |
55972918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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