View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8417_high_18 (Length: 217)
Name: NF8417_high_18
Description: NF8417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8417_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 10 - 202
Target Start/End: Complemental strand, 14162558 - 14162366
Alignment:
| Q |
10 |
tcatcaccattttctttgcatttctgcactaaaacttcggattcaccttcatttgttgtgtcctatctcatccataattttggcttcaccccacaatttg |
109 |
Q |
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| T |
14162558 |
tcattaccattttctttgcatttctgcactaaaacttcagattcaccttcatttgttgtgtcctatctcatccataattttggcttcaccccacaatttg |
14162459 |
T |
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| Q |
110 |
cttctaaactcttctcttcttactatgttcgtttcaacactgctcaaaaacctgattctgttctcagtttctttagaagtcatggtttctctg |
202 |
Q |
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| T |
14162458 |
cttctaaactcttctcctcttacaatgttcgtttcaacactgctcaaaaacctgattctgttctcagtttctttagaagtcatggtttctctg |
14162366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 202
Target Start/End: Original strand, 14485041 - 14485167
Alignment:
| Q |
76 |
ctcatccataattttggcttcaccccacaatttgcttctaaactcttctcttcttactatgttcgtttcaacactgctcaaaaacctgattctgttctca |
175 |
Q |
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| T |
14485041 |
ctcatcaacaattttggcttttccccacaatttgcttccaaactttcctccacttacaatgttcatttcaaaactgcccgaaaacctgattcagttctca |
14485140 |
T |
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| Q |
176 |
gtttctttagaagtcatggtttctctg |
202 |
Q |
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| T |
14485141 |
acttctttagaaaccatggtttctctg |
14485167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 14501921 - 14502107
Alignment:
| Q |
15 |
accattttctttgcatttctgcactaaaacttcggattcaccttcatttgttgtgtcctatctcatccataattttggcttcaccccacaatttgcttct |
114 |
Q |
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| T |
14501921 |
accattttctcttcatttctgcaccaacacttcagattcaacctcattttctgtctcatacctcatcaacaattttggctttgacccacaatttgcttcc |
14502020 |
T |
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| Q |
115 |
aaactcttctcttcttactatgttcgtttcaacactgctcaaaaacctgattctgttctcagtttctttagaagtcatggtttctct |
201 |
Q |
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| T |
14502021 |
aaactctgctccacctacaagctccgtttcaagactgaccaaaaccctgattctgttctcaaattctttagaaactatggtttctct |
14502107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 200
Target Start/End: Complemental strand, 14476438 - 14476266
Alignment:
| Q |
28 |
catttctgcactaaaacttcggattcaccttcatttgttgtgtcctatctcatccataattttggcttcaccccacaatttgcttctaaactcttctctt |
127 |
Q |
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| T |
14476438 |
catttttgcaccaacacttcagattcaacctcttttgctgtctcctacctcatcaacaattttggctttgacccacaatctgcttccaaactttcctcca |
14476339 |
T |
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| Q |
128 |
cttactatgttcgtttcaacactgctcaaaaacctgattctgttctcagtttctttagaagtcatggtttctc |
200 |
Q |
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| T |
14476338 |
cttacaatgttactttcaagaatgcccaaaaacctgactctgttctcaccttctttagaaactatggtttctc |
14476266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 14165611 - 14165426
Alignment:
| Q |
17 |
cattttctttgcatttctgcactaaaacttcggattcaccttcatttgttgtgtcctatctcatccataattttggcttcaccccacaatttgcttctaa |
116 |
Q |
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| T |
14165611 |
cattttctctacatttctgcaccaacacttcaaattcaacctcatttgcagcctcttacctcattcacaattttgggtttaccccacaatttgcttccaa |
14165512 |
T |
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| Q |
117 |
actcttctcttcttactatgttcgtttcaacactgctcaaaaacctgattctgttctcagtttctttagaagtcatggtttctctg |
202 |
Q |
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| T |
14165511 |
actctgttccgctcaccgtcttcgtttcaagaccacccaaaaacctgaatctgttctcacattctttagaaactatggtttctctg |
14165426 |
T |
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