View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8417_high_2 (Length: 659)

Name: NF8417_high_2
Description: NF8417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8417_high_2
NF8417_high_2
[»] chr3 (4 HSPs)
chr3 (14-642)||(8697439-8698067)
chr3 (14-642)||(9049326-9049954)
chr3 (379-479)||(20669118-20669217)
chr3 (412-480)||(2128316-2128383)
[»] chr8 (3 HSPs)
chr8 (148-197)||(13411339-13411388)
chr8 (433-479)||(14482141-14482187)
chr8 (433-477)||(1470941-1470985)
[»] chr6 (6 HSPs)
chr6 (426-476)||(31964674-31964724)
chr6 (372-480)||(24836220-24836331)
chr6 (376-417)||(10031739-10031780)
chr6 (435-476)||(31968104-31968145)
chr6 (351-398)||(2460147-2460195)
chr6 (435-479)||(2514641-2514685)
[»] chr5 (4 HSPs)
chr5 (388-425)||(42573808-42573845)
chr5 (435-480)||(35960352-35960397)
chr5 (412-479)||(11054125-11054190)
chr5 (435-479)||(37063161-37063205)
[»] chr1 (1 HSPs)
chr1 (349-433)||(27140469-27140554)
[»] chr4 (6 HSPs)
chr4 (379-443)||(52259612-52259676)
chr4 (417-479)||(30338662-30338723)
chr4 (426-480)||(51044537-51044591)
chr4 (382-455)||(41701476-41701548)
chr4 (379-423)||(17975394-17975438)
chr4 (351-398)||(27123348-27123396)
[»] chr7 (4 HSPs)
chr7 (418-480)||(1417202-1417263)
chr7 (417-455)||(7453467-7453505)
chr7 (415-488)||(27121654-27121726)
chr7 (420-480)||(30496642-30496701)
[»] chr2 (4 HSPs)
chr2 (379-477)||(40837460-40837557)
chr2 (438-479)||(12215746-12215787)
chr2 (379-423)||(3078665-3078709)
chr2 (435-479)||(37033983-37034027)


Alignment Details
Target: chr3 (Bit Score: 601; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 14 - 642
Target Start/End: Complemental strand, 8698067 - 8697439
Alignment:
Q  14 attattcttatggtggatctgagttgacttaccaaggcttttcaaatggttctggtaatggtttttatggctcttttgatggagttaacactatggaatc 113  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8698067 attactcttatggtggatctgagttgatttaccaaggcttttcaaatggttctggtaatggtttttatggctcttttggtggagttaacactatggaatc 8697968  T
Q  114 ggatgattctaatcaatctaaaattggtgttaggaattgctccaatcttattaggcaaaagagttcacctgctgaatttttctctaatgaaaatggtatg 213  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8697967 agatgattctaatcaatctaaaattggtgttaggaattgctccaatcttattaggcaaaagagttcacctgctgaatttttctctaatgaaaatggtatg 8697868  T
Q  214 aattttatcttatttgcaaactgttatagattttactatgtgctttttcccctatggtagtaattaaggtctgtttggattagcttattgggcttatcca 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8697867 aattttatcttatttgcaaactgttatagattttactatgtgctttttcccctatggtagtaattaaggtctgtttggattagcttattgggcttatcca 8697768  T
Q  314 ctaacatacacacttattatcagactatttggacgagcttatgacatgtctttaagtttttccatcttatttccttaagctctcctagatagcttagaaa 413  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8697767 ctaacatacacacttattatcagactatttgggcgagcttatgacatgtctttaagtttttccatcttatttccttaagctctcctagatagcttagaaa 8697668  T
Q  414 aacagcttataggaaaacaaatttgactttattctatcttttattgtaggaatagtttatacataaagagttataaagagtttatttcctaaaactctta 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8697667 aacagcttataggaaaacaaatttgactttattctatcttttattgtaggaatagtttatacataaagagttataaagagtttatttcctaaaactctta 8697568  T
Q  514 tgccataagtctttattcaaacagggcttaatgttttcatataattgaaagataaatgttatgatttaaattgaaatacttctcttgtatgaaaccaaga 613  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8697567 tgccataagtctttatccaaacagggcttaatgttttcatataattgaaagataaatgttatgatttaaattgaaatacttctcttgtatgaaaccaaaa 8697468  T
Q  614 aaaaacaaatgaacaattggaccaatgtt 642  Q
    |||||||||||||||||||||||||||||    
T  8697467 aaaaacaaatgaacaattggaccaatgtt 8697439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 14 - 642
Target Start/End: Complemental strand, 9049954 - 9049326
Alignment:
Q  14 attattcttatggtggatctgagttgacttaccaaggcttttcaaatggttctggtaatggtttttatggctcttttgatggagttaacactatggaatc 113  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9049954 attactcttatggtggatctgagttgatttaccaaggcttttcaaatggttctggtaatggtttttatggctcttttggtggagttaacactatggaatc 9049855  T
Q  114 ggatgattctaatcaatctaaaattggtgttaggaattgctccaatcttattaggcaaaagagttcacctgctgaatttttctctaatgaaaatggtatg 213  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9049854 agatgattctaatcaatctaaaattggtgttaggaattgctccaatcttattaggcaaaagagttcacctgctgaatttttctctaatgaaaatggtatg 9049755  T
Q  214 aattttatcttatttgcaaactgttatagattttactatgtgctttttcccctatggtagtaattaaggtctgtttggattagcttattgggcttatcca 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9049754 aattttatcttatttgcaaactgttatagattttactatgtgctttttcccctatggtagtaattaaggtctgtttggattagcttattgggcttatcca 9049655  T
Q  314 ctaacatacacacttattatcagactatttggacgagcttatgacatgtctttaagtttttccatcttatttccttaagctctcctagatagcttagaaa 413  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9049654 ctaacatacacacttattatcagactatttgggcgagcttatgacatgtctttaagtttttccatcttatttccttaagctctcctagatagcttagaaa 9049555  T
Q  414 aacagcttataggaaaacaaatttgactttattctatcttttattgtaggaatagtttatacataaagagttataaagagtttatttcctaaaactctta 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9049554 aacagcttataggaaaacaaatttgactttattctatcttttattgtaggaatagtttatacataaagagttataaagagtttatttcctaaaactctta 9049455  T
Q  514 tgccataagtctttattcaaacagggcttaatgttttcatataattgaaagataaatgttatgatttaaattgaaatacttctcttgtatgaaaccaaga 613  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9049454 tgccataagtctttatccaaacagggcttaatgttttcatataattgaaagataaatgttatgatttaaattgaaatacttctcttgtatgaaaccaaaa 9049355  T
Q  614 aaaaacaaatgaacaattggaccaatgtt 642  Q
    |||||||||||||||||||||||||||||    
T  9049354 aaaaacaaatgaacaattggaccaatgtt 9049326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 379 - 479
Target Start/End: Complemental strand, 20669217 - 20669118
Alignment:
Q  379 cttatttccttaagctctcctagatagcttagaaaaacagcttataggaaaacaaatttgactttattctatcttttattgtaggaatagtttatacata 478  Q
    ||||||| | |||||||||| ||||||||||  ||||||||||||| || ||| | |||||||||||| ||| | || || ||| ||||| |||||||||    
T  20669217 cttatttacataagctctccaagatagcttatgaaaacagcttatatgacaac-attttgactttattgtatatcttgttatagaaatagcttatacata 20669119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 412 - 480
Target Start/End: Original strand, 2128316 - 2128383
Alignment:
Q  412 aaaacagcttataggaaaacaaatttgactttattctatcttttattgtaggaatagtttatacataaa 480  Q
    ||||||||||| || ||||||| ||| |||||||| |||||||| || ||| ||||| |||||||||||    
T  2128316 aaaacagcttacagtaaaacaa-tttaactttattttatcttttgttatagaaatagcttatacataaa 2128383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 13411388 - 13411339
Alignment:
Q  148 aattgctccaatcttattaggcaaaagagttcacctgctgaatttttctc 197  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  13411388 aattgctccaatcttattaggcaaaagagttctcctgctgagtttttctc 13411339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 433 - 479
Target Start/End: Complemental strand, 14482187 - 14482141
Alignment:
Q  433 aatttgactttattctatcttttattgtaggaatagtttatacataa 479  Q
    |||||||||||||| |||||||| || ||| ||||||||||||||||    
T  14482187 aatttgactttattttatcttttgttatagaaatagtttatacataa 14482141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 433 - 477
Target Start/End: Original strand, 1470941 - 1470985
Alignment:
Q  433 aatttgactttattctatcttttattgtaggaatagtttatacat 477  Q
    |||||||||||||| ||||||||||| ||| ||||| ||||||||    
T  1470941 aatttgactttattttatcttttattatagaaatagcttatacat 1470985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 426 - 476
Target Start/End: Original strand, 31964674 - 31964724
Alignment:
Q  426 gaaaacaaatttgactttattctatcttttattgtaggaatagtttataca 476  Q
    |||||||  |||||||||||| |||||||||||||||||||||||||||||    
T  31964674 gaaaacagttttgactttattttatcttttattgtaggaatagtttataca 31964724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 480
Target Start/End: Original strand, 24836220 - 24836331
Alignment:
Q  372 tttccatcttatttccttaagctctcctagatagcttagaaaaac----agcttataggaaaacaaatttgactttattctatcttttattgtaggaata 467  Q
    |||||| ||||||||| ||||||||||  |||||||||  |||||    || ||||| |||||||| |||||||||||| |||||||| || ||| ||||    
T  24836220 tttccagcttatttccataagctctccatgatagcttacgaaaacttatagtttatacgaaaacaa-tttgactttattttatcttttgttatagaaata 24836318  T
Q  468 gtttatacataaa 480  Q
      |||||||||||    
T  24836319 acttatacataaa 24836331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 417
Target Start/End: Complemental strand, 10031780 - 10031739
Alignment:
Q  376 catcttatttccttaagctctcctagatagcttagaaaaaca 417  Q
    ||||||||||||||||||||||| ||| |||||| |||||||    
T  10031780 catcttatttccttaagctctccaagacagcttataaaaaca 10031739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 476
Target Start/End: Original strand, 31968104 - 31968145
Alignment:
Q  435 tttgactttattctatcttttattgtaggaatagtttataca 476  Q
    |||||||||||| ||| || ||||||||||||||||||||||    
T  31968104 tttgactttattttattttctattgtaggaatagtttataca 31968145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 351 - 398
Target Start/End: Original strand, 2460147 - 2460195
Alignment:
Q  351 cttatgacatgtctttaagtt-tttccatcttatttccttaagctctcc 398  Q
    ||||||||||||||||||||| ||| || ||||||||| ||||||||||    
T  2460147 cttatgacatgtctttaagttgttttcaacttatttccataagctctcc 2460195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 2514685 - 2514641
Alignment:
Q  435 tttgactttattctatcttttattgtaggaatagtttatacataa 479  Q
    |||||||||||| ||||||||||| ||| ||||| ||||||||||    
T  2514685 tttgactttattttatcttttattatagaaatagcttatacataa 2514641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 388 - 425
Target Start/End: Original strand, 42573808 - 42573845
Alignment:
Q  388 ttaagctctcctagatagcttagaaaaacagcttatag 425  Q
    |||||||||||||||||||||| |||||||||||||||    
T  42573808 ttaagctctcctagatagcttataaaaacagcttatag 42573845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 480
Target Start/End: Complemental strand, 35960397 - 35960352
Alignment:
Q  435 tttgactttattctatcttttattgtaggaatagtttatacataaa 480  Q
    |||||||||||| ||||||||||| ||| |||||||||| ||||||    
T  35960397 tttgactttattttatcttttattatagaaatagtttatgcataaa 35960352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 412 - 479
Target Start/End: Complemental strand, 11054190 - 11054125
Alignment:
Q  412 aaaacagcttataggaaaacaaatttgactttattctatcttttattgtaggaatagtttatacataa 479  Q
    |||||| |||||| |||||| ||||  |||||||| ||||||||||| ||| ||||| ||||||||||    
T  11054190 aaaacatcttatacgaaaactaatt--actttattttatcttttattatagaaatagcttatacataa 11054125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Original strand, 37063161 - 37063205
Alignment:
Q  435 tttgactttattctatcttttattgtaggaatagtttatacataa 479  Q
    |||||||||||| |||||||| || ||| ||||||||||||||||    
T  37063161 tttgactttattttatcttttgttatagaaatagtttatacataa 37063205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 433
Target Start/End: Complemental strand, 27140554 - 27140469
Alignment:
Q  349 agcttatgacatgtctttaagtt-tttccatcttatttccttaagctctcctagatagcttagaaaaacagcttataggaaaacaa 433  Q
    |||||||||||||||  |||||| ||| || ||||||| | ||||||||||  ||||||||| ||||||||||||||  |||||||    
T  27140554 agcttatgacatgtccataagttgttttcagcttatttgcataagctctccatgatagcttataaaaacagcttatataaaaacaa 27140469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 379 - 443
Target Start/End: Complemental strand, 52259676 - 52259612
Alignment:
Q  379 cttatttccttaagctctcctagatagcttagaaaaacagcttataggaaaacaaatttgacttt 443  Q
    ||||||| | |||||||||| |||||||||| |||||||||||||| | ||| ||| ||||||||    
T  52259676 cttattttcataagctctcccagatagcttataaaaacagcttatacggaaaaaaaattgacttt 52259612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 417 - 479
Target Start/End: Original strand, 30338662 - 30338723
Alignment:
Q  417 agcttataggaaaacaaatttgactttattctatcttttattgtaggaatagtttatacataa 479  Q
    |||||||| |||||||  ||| ||||||||||||||||| || ||| ||||||||||||||||    
T  30338662 agcttatatgaaaacag-tttaactttattctatcttttgttatagaaatagtttatacataa 30338723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 426 - 480
Target Start/End: Original strand, 51044537 - 51044591
Alignment:
Q  426 gaaaacaaatttgactttattctatcttttattgtaggaatagtttatacataaa 480  Q
    |||||||| |||||||||||| |||||||| || ||| ||||| |||||||||||    
T  51044537 gaaaacaagtttgactttattttatcttttgttatagaaatagcttatacataaa 51044591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 455
Target Start/End: Original strand, 41701476 - 41701548
Alignment:
Q  382 atttccttaagctctcctagatagcttagaaaaacagcttataggaaaacaaatttgactttattctatctttt 455  Q
    |||||| || ||||||||  ||||||||  ||||||||||||| ||||||  ||||||||||||| ||||||||    
T  41701476 atttccatatgctctcctgtatagcttattaaaacagcttatatgaaaac-gatttgactttattttatctttt 41701548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 17975394 - 17975438
Alignment:
Q  379 cttatttccttaagctctcctagatagcttagaaaaacagcttat 423  Q
    |||||||||  ||||||||| |||||||||| |||||||||||||    
T  17975394 cttatttccagaagctctccaagatagcttataaaaacagcttat 17975438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 351 - 398
Target Start/End: Original strand, 27123348 - 27123396
Alignment:
Q  351 cttatgacatgtctttaagtt-tttccatcttatttccttaagctctcc 398  Q
    ||||||||||||||||||||| ||| || ||||||||| ||||||||||    
T  27123348 cttatgacatgtctttaagttgttttcaacttatttccataagctctcc 27123396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 480
Target Start/End: Complemental strand, 1417263 - 1417202
Alignment:
Q  418 gcttataggaaaacaaatttgactttattctatcttttattgtaggaatagtttatacataaa 480  Q
    ||||||| |||||||| |||||||||||| |||||||| || ||  |||||||||||||||||    
T  1417263 gcttatatgaaaacaa-tttgactttattttatcttttgttatataaatagtttatacataaa 1417202  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 417 - 455
Target Start/End: Original strand, 7453467 - 7453505
Alignment:
Q  417 agcttataggaaaacaaatttgactttattctatctttt 455  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  7453467 agcttatatgaaaacaaatttgactttattttatctttt 7453505  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 488
Target Start/End: Original strand, 27121654 - 27121726
Alignment:
Q  415 acagcttataggaaaacaaatttgactttattctatcttttattgtaggaatagtttatacataaagagttata 488  Q
    |||||||||| |||||||| |||||||||||| |||| |||||| ||| ||||  |||||||||| || |||||    
T  27121654 acagcttatatgaaaacaa-tttgactttattttatcatttattatagaaatatcttatacataaggaattata 27121726  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 420 - 480
Target Start/End: Complemental strand, 30496701 - 30496642
Alignment:
Q  420 ttataggaaaacaaatttgactttattctatcttttattgtaggaatagtttatacataaa 480  Q
    ||||| |||||||| |||||||||||| ||| |||| || ||| |||||||||||||||||    
T  30496701 ttatacgaaaacaa-tttgactttattttatattttgttatagaaatagtttatacataaa 30496642  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 379 - 477
Target Start/End: Original strand, 40837460 - 40837557
Alignment:
Q  379 cttatttccttaagctctcctagatagcttagaaaaacagcttataggaaaacaaatttgactttattctatcttttattgtaggaatagtttatacat 477  Q
    ||||||||| |||||||| |  |||||||||  |||||| | |||| |||||||| |||||||||| | |||||||| || ||| ||||| ||||||||    
T  40837460 cttatttccataagctctacatgatagcttattaaaacaacatatatgaaaacaa-tttgactttaatttatcttttgttatagaaatagcttatacat 40837557  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 479
Target Start/End: Complemental strand, 12215787 - 12215746
Alignment:
Q  438 gactttattctatcttttattgtaggaatagtttatacataa 479  Q
    ||||||||| |||||||| |||||| ||||||||||||||||    
T  12215787 gactttattttatcttttgttgtagaaatagtttatacataa 12215746  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 3078665 - 3078709
Alignment:
Q  379 cttatttccttaagctctcctagatagcttagaaaaacagcttat 423  Q
    |||||||||  ||||||||| |||||||||| |||||||||||||    
T  3078665 cttatttccagaagctctccaagatagcttataaaaacagcttat 3078709  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 37034027 - 37033983
Alignment:
Q  435 tttgactttattctatcttttattgtaggaatagtttatacataa 479  Q
    |||||||||||| |||||||| || ||| ||||||||||||||||    
T  37034027 tttgactttattttatctttttttatagaaatagtttatacataa 37033983  T

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