View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8417_high_4 (Length: 503)
Name: NF8417_high_4
Description: NF8417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8417_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 21 - 356
Target Start/End: Complemental strand, 20625329 - 20624991
Alignment:
| Q |
21 |
agcatagccatagtttcttgtatgggcagcaccaatccaatccatggtcgtgtcctacaaatactgcctgccattatcaaaaggaaaagaacttcaacag |
120 |
Q |
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| T |
20625329 |
agcatagccatagtttcttgtatgggcagcaccaatccaatccatggtcgtgtcctacaaatactgcctgccattatcaaaaggaaaagaacttcaacag |
20625230 |
T |
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| Q |
121 |
gattccaatattcaatatcatattttaagaaataccatcacaaaaacaaaacatttatctagtttctctaaagtatacaatccacaataaagtacaccaa |
220 |
Q |
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| T |
20625229 |
gattccaatattcaatatcatattttaagaaataccatcacaaaaacaaaacatttatctagcttctctaaagtatacaatccacaaaaaagtacaccaa |
20625130 |
T |
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| Q |
221 |
aattctgctgttccatctacaaacaagtgagagttgagagtttcgcctcctacttagaatatgcaatacgcttgtaatgggcacctaggcattcaagtaa |
320 |
Q |
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| T |
20625129 |
aattctgctgttccatctacaaacaagtgagagttaagagtttcgcctcctacttagaatatgcaatacgcttgtaatgggcacctaggcattcaagtaa |
20625030 |
T |
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| Q |
321 |
attgagaaacctatc---ttctcagtttctcatcatgtc |
356 |
Q |
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| T |
20625029 |
actgagaaacctatcctgttctcagtttctcatcatgtc |
20624991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 415 - 497
Target Start/End: Complemental strand, 20624932 - 20624850
Alignment:
| Q |
415 |
caaactttatggaatattttagaaattcattgtacaaatatagtaggttgctttgaccttaccttgactgaggttcttctcac |
497 |
Q |
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| T |
20624932 |
caaactttatggaatattttagaaattcattgtacaaatatagtaggttgctttgaccttaccttgactgaggttcttttcac |
20624850 |
T |
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