View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8417_low_1 (Length: 666)

Name: NF8417_low_1
Description: NF8417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8417_low_1
NF8417_low_1
[»] chr1 (13 HSPs)
chr1 (269-579)||(16585030-16585347)
chr1 (1-222)||(16584764-16584984)
chr1 (1-222)||(1161333-1161553)
chr1 (1-222)||(8084053-8084276)
chr1 (1-222)||(11619984-11620202)
chr1 (34-222)||(18461175-18461362)
chr1 (76-222)||(25785817-25785962)
chr1 (1-222)||(42009884-42010089)
chr1 (5-84)||(25787286-25787365)
chr1 (592-647)||(16585423-16585478)
chr1 (33-221)||(11911652-11911839)
chr1 (160-221)||(513020-513081)
chr1 (33-145)||(32678388-32678500)
[»] chr8 (10 HSPs)
chr8 (1-213)||(44223226-44223438)
chr8 (1-215)||(7956240-7956453)
chr8 (11-222)||(35948893-35949101)
chr8 (19-222)||(17722330-17722540)
chr8 (2-221)||(25456027-25456251)
chr8 (70-221)||(3767625-3767775)
chr8 (33-187)||(9040513-9040666)
chr8 (142-213)||(34760846-34760917)
chr8 (59-222)||(9505082-9505244)
chr8 (128-222)||(16570889-16570982)
[»] chr7 (10 HSPs)
chr7 (1-222)||(7352270-7352489)
chr7 (1-222)||(39695148-39695364)
chr7 (1-215)||(46993321-46993540)
chr7 (1-215)||(7995018-7995233)
chr7 (99-184)||(11727326-11727410)
chr7 (5-145)||(35738033-35738177)
chr7 (34-221)||(46265238-46265422)
chr7 (45-207)||(2197614-2197775)
chr7 (115-217)||(2923024-2923125)
chr7 (33-215)||(25545139-25545320)
[»] scaffold0879 (1 HSPs)
scaffold0879 (1-213)||(474-691)
[»] chr4 (6 HSPs)
chr4 (1-213)||(24466209-24466426)
chr4 (1-212)||(28319190-28319400)
chr4 (1-222)||(23107801-23108031)
chr4 (60-222)||(4413520-4413681)
chr4 (151-221)||(53393204-53393274)
chr4 (1-221)||(8606028-8606251)
[»] chr2 (7 HSPs)
chr2 (1-222)||(31111479-31111699)
chr2 (1-212)||(13852169-13852379)
chr2 (1-169)||(36009278-36009453)
chr2 (33-222)||(4638220-4638417)
chr2 (8-223)||(38607032-38607254)
chr2 (1-221)||(29109056-29109281)
chr2 (151-212)||(3919904-3919965)
[»] chr5 (4 HSPs)
chr5 (11-222)||(19947774-19947984)
chr5 (37-222)||(16746357-16746541)
chr5 (1-222)||(31895962-31896175)
chr5 (114-222)||(16746553-16746660)
[»] chr3 (7 HSPs)
chr3 (34-222)||(46655581-46655768)
chr3 (33-221)||(44471084-44471271)
chr3 (59-221)||(11503284-11503445)
chr3 (151-221)||(30554588-30554658)
chr3 (142-221)||(779538-779617)
chr3 (142-215)||(44682037-44682111)
chr3 (177-222)||(46892670-46892715)
[»] scaffold0565 (1 HSPs)
scaffold0565 (1-222)||(1741-1964)
[»] chr6 (5 HSPs)
chr6 (33-221)||(11846307-11846494)
chr6 (3-125)||(1208720-1208848)
chr6 (1-209)||(9826816-9827029)
chr6 (152-221)||(7176529-7176598)
chr6 (151-215)||(23301484-23301548)
[»] scaffold0070 (1 HSPs)
scaffold0070 (2-215)||(13819-14037)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 269 - 579
Target Start/End: Original strand, 16585030 - 16585347
Alignment:
Q  269 tccgaaccacttacacccctactcaaaggcctaaaaaactaatcacaa-------agatcaaggggcataactcacttccccccaaccacgtccaaatct 361  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||       |||||||||||||||||||||||||||||||||   |||||||||    
T  16585030 tccgaaccacttacacccctactcaaaggcctaaaaaactgatcacaagtagagtagatcaaggggcataactcacttccccccaaccttatccaaatct 16585129  T
Q  362 tataacaagcatgaatggtaaactcacaagtaataaaaagatggtgcaccacaaacacacaagaggtaccgttagggtctaagaacacttcgtgacgacc 461  Q
    ||| |||  ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  16585130 tattacacacatgaatgggaaactcacaagtaatgaaaagatggtgcaccacaaacacacaagaggtaccgttagggtctaagaacacttcttgacgacg 16585229  T
Q  462 aagactatgactgataagggccttgtcaagaagtaaatgtaaagataaggcaattacttcttacaaaagtcaactcttcaagatttgagttaaacaatga 561  Q
    |||||||| |||||||| |||||||||||||||||| |||||||| |||||||||||||| ||||||| ||||||||||||||||| |||||||||||||    
T  16585230 aagactataactgataaaggccttgtcaagaagtaactgtaaagagaaggcaattacttcgtacaaaaatcaactcttcaagattttagttaaacaatga 16585329  T
Q  562 aggcccgtcactcacaaa 579  Q
    ||||||||||| ||||||    
T  16585330 aggcccgtcacccacaaa 16585347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 16584764 - 16584984
Alignment:
Q  1 gagaaagtgaatggattaaaaagtattttatgtttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  16584764 gagaaagtgaatggattaaaaagtattttatgtttaattttgggtctaaccataagtttgtgtgaggtatgataatattagtaaaataaggagtttggtt 16584863  T
Q  101 atcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaac 200  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16584864 atcatcagattggttcatcggtttcacggatctcgaaa-taaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaac 16584962  T
Q  201 cgaaccaaacaaggttggatat 222  Q
    ||||||||||||||||||||||    
T  16584963 cgaaccaaacaaggttggatat 16584984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1161333 - 1161553
Alignment:
Q  1 gagaaagtgaatggattaaaaagtattttatgtttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggtt 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1161333 gagaaagtgaatggattaaaaaatattttatgtttaattttgggctgaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggtt 1161432  T
Q  101 atcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaac 200  Q
    |||||| ||||| |||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||| |||||||| | |||| ||||||||||    
T  1161433 atcatcggattggttcatcggtttcacggatatcgaaa-tgaaaaaccatgaaccaaaccaaactagatcggtttcgattggcttggattggtttcaaac 1161531  T
Q  201 cgaaccaaacaaggttggatat 222  Q
    ||||||||| ||||| ||||||    
T  1161532 cgaaccaaataaggtcggatat 1161553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8084276 - 8084053
Alignment:
Q  1 gagaaagtgaatggattaaaaagtattttatgtttaattttgggcctaaccataagtttgtgtgaggtaggataat---attagtaaaataaggagtgtg 97  Q
    |||||||||||| ||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||    |||||||||||||||||||||    
T  8084276 gagaaagtgaatagattaaaaattattttatgtttaattttgtgcctaaccatgagtttgtgtgaggtaggataaatggattagtaaaataaggagtgtg 8084177  T
Q  98 gttatcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttca 197  Q
    ||||||||| |||||||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  8084176 gttatcatcggattgattcatcagtttcacggatcttgaaatgaaaaa-ccatgaaccaaaccaaactagatcggtttcgattggttcggattggtttca 8084078  T
Q  198 aaccgaaccaaacaaggttggatat 222  Q
    |||| ||||||||||||| ||||||    
T  8084077 aaccaaaccaaacaaggtcggatat 8084053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 11620202 - 11619984
Alignment:
Q  1 gagaaagtgaatggattaaaaagtattttatgtttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggtt 100  Q
    |||||||||||| ||||||||||||||| |||||||||||||||  ||||||||||||||||  |||||||||||||||||||||||||| ||||||  |    
T  11620202 gagaaagtgaattgattaaaaagtatttcatgtttaattttgggtttaaccataagtttgtg--aggtaggataatattagtaaaataagtagtgtgagt 11620105  T
Q  101 atcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaac 200  Q
    |||||| ||||| |||||||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||| |||||| ||| |||||||||||||||    
T  11620104 atcatcggattggttcatcggtttcacagatctcaaaatgaaaaa-ccatgaaccaaaccaaactagatcggtttcgattagtttggatcggtttcaaac 11620006  T
Q  201 cgaaccaaacaaggttggatat 222  Q
     |||||||||||| | ||||||    
T  11620005 tgaaccaaacaagatcggatat 11619984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 34 - 222
Target Start/End: Complemental strand, 18461362 - 18461175
Alignment:
Q  34 ttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggttatcatcagattgattcatcggtttcacggatct 133  Q
    |||||||||||| |||||||||||||||| ||||| ||||||||||| |||| ||| |||||||||||||||| ||||| ||||||||||||||||||||    
T  18461362 ttaattttgggcttaaccataagtttgtgcgaggttggataatattaataaattaatgagtgtggttatcatcggattggttcatcggtttcacggatct 18461263  T
Q  134 cgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaaggttggatat 222  Q
    ||||| ||||||| ||||||||||||||||||| |||||| | ||||||| | ||||| ||| ||||||||| ||||||||| ||||||    
T  18461262 cgaaa-taaaaaatcatgaaccaaaccaaactaaatcggttttgattggtccagatcgatttgaaaccgaactaaacaaggtcggatat 18461175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 76 - 222
Target Start/End: Complemental strand, 25785962 - 25785817
Alignment:
Q  76 tattagtaaaataaggagtgtggttatcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtat 175  Q
    |||||||||||||| || ||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| |    
T  25785962 tattagtaaaataaagaatgtggttatcatcggattggttcatcggtttcacggatctcgaaatgaaaaa-ccatgaaccaaaccaaactatatcggttt 25785864  T
Q  176 cgattggttcggatcggtttcaaaccgaaccaaacaaggttggatat 222  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  25785863 cgattggttcggatcggtttcaaaccgaaccaaacaaggtcggatat 25785817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 42009884 - 42010089
Alignment:
Q  1 gagaaagtgaatggattaaaaa-gtattttatgtt-----taattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagt 94  Q
    |||||| ||||||||| ||||| ||||||||||||     ||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  42009884 gagaaaatgaatggataaaaaaagtattttatgttgactttaattttaggcctaaccataagtttgtgtgaggtaggatactattagtaatataaggagt 42009983  T
Q  95 gtggttatcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtt 194  Q
    ||||||||||||                     ||||||| |||| |||| |||||||  ||||| ||||||||||||| || ||||||| |||||||||    
T  42009984 gtggttatcatc---------------------ggatctcaaaatgaaaa-accatgagtcaaactaaactagatcggtttcaattggtttggatcggtt 42010061  T
Q  195 tcaaaccgaaccaaacaaggttggatat 222  Q
    |||||||||||||||||| || ||||||    
T  42010062 tcaaaccgaaccaaacaatgtcggatat 42010089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 25787365 - 25787286
Alignment:
Q  5 aagtgaatggattaaaaagtattttatgtttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaa 84  Q
    ||||| |||||||||||| ||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  25787365 aagtgcatggattaaaaattatttaatgtttaattttgggtctaacaataagtttgtgtgaggtaggataatattagtaa 25787286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 592 - 647
Target Start/End: Original strand, 16585423 - 16585478
Alignment:
Q  592 agggtcttgttattgtatgacattcgatagtgtaatttatttaaaagtcacgtaat 647  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16585423 agggtcttgttattgtatgacattcgatagtgtaatttatttaaaagtcacgtaat 16585478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 33 - 221
Target Start/End: Complemental strand, 11911839 - 11911652
Alignment:
Q  33 tttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggttatcatcagattgattcatcggtttcacggatc 132  Q
    |||||||||| || ||| ||||||| || |||| |  ||||||||||| | ||||  |||||| | |||  ||| | ||| ||||||||||   |||||     
T  11911839 tttaattttgagcttaatcataagtgtgcgtgatgagggataatattactcaaatggggagtgagtttagtatcggtttggttcatcggttcatcggatt 11911740  T
Q  133 tcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaaggttggata 221  Q
    || |||||||||| ||| |||| ||| |||||||||||||| | | ||||||||| |||||||  |||||||||||||||||| |||||    
T  11911739 tcaaaattaaaaa-ccaagaactaaatcaaactagatcggtttaggttggttcggttcggttttgaaccgaaccaaacaaggtcggata 11911652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 513081 - 513020
Alignment:
Q  160 caaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaaggttggata 221  Q
    |||||||||||||| | | ||||||||| | |||||  |||||||||||||||| |||||||    
T  513081 caaactagatcggtttaggttggttcggtttggttttgaaccgaaccaaacaagattggata 513020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 32678388 - 32678500
Alignment:
Q  33 tttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggttatcatcagattgattcatcggtttcacggatc 132  Q
    |||||||||| |  ||| ||||||| ||||| | |  ||||||||||| ||||||  |||||| ||||| |||||| | ||||||||||||    |||||    
T  32678388 tttaattttgagtttaatcataagtgtgtgttatgagggataatattactaaaatggggagtgaggttagcatcagttcgattcatcggttcattggatc 32678487  T
Q  133 tcgaaattaaaaa 145  Q
    || ||||||||||    
T  32678488 tcaaaattaaaaa 32678500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 158; Significance: 1e-83; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 44223226 - 44223438
Alignment:
Q  1 gagaaagtgaatggattaaaa-agtattttatgtttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggt 99  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44223226 gagaaagtgaatggattaaaaaagtattttatgtttaattttgggcctaaccataagtttgtgtgaggtaggataatatttgtaaaataaggagtgtggt 44223325  T
Q  100 tatcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaa 199  Q
    ||||||| ||||| ||||||||||||||||||||||||| | ||||| |||||||||||||||||||||| ||| ||||||||||| ||||||||| |||    
T  44223326 tatcatcggattggttcatcggtttcacggatctcgaaa-tgaaaaatcatgaaccaaaccaaactagattggtttcgattggttcagatcggttttaaa 44223424  T
Q  200 ccgaaccaaacaag 213  Q
    | ||||||||||||    
T  44223425 ctgaaccaaacaag 44223438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 7956240 - 7956453
Alignment:
Q  1 gagaaagtgaatggattaaaaagtattttatgtttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggtt 100  Q
    ||||||| ||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7956240 gagaaagagaatgtattaaaaaatattttatgtttaattttgggcataaccataagtttgtgtgaggtaggataatattagtaaaataaggagtatggtt 7956339  T
Q  101 atcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaac 200  Q
    |||||| ||||| ||||||||||||||  ||||| ||| | |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  7956340 atcatcggattggttcatcggtttcacatatctc-aaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggttcgaatcggtttcaaac 7956438  T
Q  201 cgaaccaaacaaggt 215  Q
    | ||| || ||||||    
T  7956439 caaacaaagcaaggt 7956453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 35949101 - 35948893
Alignment:
Q  11 atggattaaaaagtattttatgtttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggttatcatcagat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||| ||||||||| |||    
T  35949101 atggattaaaaagtattttatgtttaattttgggcctaaccataagtttgtg--aggtaggataatattagtaaaataaggaatgttgttatcatcggat 35949004  T
Q  111 tgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaac 210  Q
    || ||||||||||||| ||||||||||| | |||||||||||| ||||||||||||||||| | | || || ||||||||||||||||||||||||||||    
T  35949003 tggttcatcggtttcatggatctcgaaa-tgaaaaaccatgaatcaaaccaaactagatcgattttgaatgattcggatcggtttcaaaccgaaccaaac 35948905  T
Q  211 aaggttggatat 222  Q
    || || ||||||    
T  35948904 aaagtcggatat 35948893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 17722330 - 17722540
Alignment:
Q  19 aaaagtattttatgtttaattttgggcctaaccataagtttgtgtgaggtagga--------taatattagtaaaataaggagtgtggttatcatcagat 110  Q
    |||| |||||||||||||||||||||||||||||| ||| ||||||||||||||        ||||||||||||| ||| |||||||||||||||| |||    
T  17722330 aaaattattttatgtttaattttgggcctaaccatgagtatgtgtgaggtaggaatttatgataatattagtaaagtaatgagtgtggttatcatcggat 17722429  T
Q  111 tgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaac 210  Q
    || |||||||||||||| ||||||||||| ||||| | ||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||    
T  17722430 tggttcatcggtttcacagatctcgaaatgaaaaatc-atgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaac 17722528  T
Q  211 aaggttggatat 222  Q
    ||||||||||||    
T  17722529 aaggttggatat 17722540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 25456027 - 25456251
Alignment:
Q  2 agaaagtgaatggattaaaaagtattttatg------tttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtg 95  Q
    ||||||||||||||||||  |||| ||||||      ||||||||||||| ||  ||||||| ||||||| |  |||||||| |||||||||  ||||||    
T  25456027 agaaagtgaatggattaagtagtactttatgctgggctttaattttgggcatactcataagtgtgtgtgaagagggataataatagtaaaatggggagtg 25456126  T
Q  96 tggttatcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggttt 195  Q
     ||||| |||||| | |||||||||||||   ||||||| |||| ||||| | || ||||||||||||| |||| ||| | ||||| ||||| |||||||    
T  25456127 aggttagcatcagttcgattcatcggtttattggatctcaaaatgaaaaaccgat-aaccaaaccaaacaagattggtttagattgattcggttcggttt 25456225  T
Q  196 caaaccgaaccaaacaaggttggata 221  Q
      ||| |||||| ||||||| |||||    
T  25456226 tgaactgaaccagacaaggtcggata 25456251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 70 - 221
Target Start/End: Original strand, 3767625 - 3767775
Alignment:
Q  70 ggataatattagtaaaataaggagtgtggttatcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagat 169  Q
    ||||||||||| ||||||  |||||| ||||| |||| | | | ||||||||||    ||||||| |||| ||||||||  |||||||||||||||||||    
T  3767625 ggataatattactaaaatggggagtgaggttagcatcggttcggttcatcggttcattggatctcaaaat-aaaaaaccgagaaccaaaccaaactagat 3767723  T
Q  170 cggtatcgattggttcggatcggtttcaaaccgaaccaaacaaggttggata 221  Q
    |||| | ||||||||||| |||||||  |||||||| ||||||||| |||||    
T  3767724 cggtttagattggttcggttcggttttgaaccgaactaaacaaggtcggata 3767775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 33 - 187
Target Start/End: Complemental strand, 9040666 - 9040513
Alignment:
Q  33 tttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggttatcatcagattgattcatcggtttcacggatc 132  Q
    |||||||||| |||||| ||||||| |||||||||  |||||||| |||||||||  | |||| ||||| |||||  | | ||||||||||||   ||||    
T  9040666 tttaattttgagcctaatcataagtgtgtgtgaggagggataataatagtaaaatgggaagtggggttagcatcaactcggttcatcggtttcttagatc 9040567  T
Q  133 tcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcgg 187  Q
    || ||| | |||||||  |||||||||||||| |||||||| | |||||||||||    
T  9040566 tc-aaaatgaaaaaccgagaaccaaaccaaacaagatcggtttagattggttcgg 9040513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 34760846 - 34760917
Alignment:
Q  142 aaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaag 213  Q
    |||||||| ||||||||||||||||||||||| | | ||||||||| ||| |||  ||||||||||||||||    
T  34760846 aaaaaccaagaaccaaaccaaactagatcggtttaggttggttcggttcgattttgaaccgaaccaaacaag 34760917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 59 - 222
Target Start/End: Complemental strand, 9505244 - 9505082
Alignment:
Q  59 tgtgtgaggtaggataatattagtaaaataaggagtgtggttatcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaa 158  Q
    ||||||||| |||||||||||| ||||||  |||||| ||||  |||| | | | || ||||||||   |||| || |||||||||  | | ||||| ||    
T  9505244 tgtgtgaggaaggataatattactaaaatggggagtgaggttggcatcggttcggtttatcggtttgttggatttcaaaattaaaatccta-gaaccgaa 9505146  T
Q  159 ccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaaggttggatat 222  Q
    |||||||| |||||| | | ||||||||| ||| |||  || ||||||||||||||||||||||    
T  9505145 ccaaactatatcggttttggttggttcggttcgattttgaatcgaaccaaacaaggttggatat 9505082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 16570889 - 16570982
Alignment:
Q  128 ggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaaggttggatat 222  Q
    ||||||| |||||||||| | | ||||| ||||||| ||||||||| | | |||||| || |||||||  |||| ||||||||||||||||||||    
T  16570889 ggatctcaaaattaaaaatcga-gaacctaaccaaattagatcggtttaggttggtttggttcggttttgaaccaaaccaaacaaggttggatat 16570982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 158; Significance: 1e-83; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 7352270 - 7352489
Alignment:
Q  1 gagaaagtgaatggattaaaaagtattttatgtttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggtt 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7352270 gagaaagtgaatggattaaaacgtattttatgtttaattttgggtctaactataagtttgtgtgacgtaggataatattagtaaaataaggagtgtggtt 7352369  T
Q  101 atcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaac 200  Q
    |||||| |||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  7352370 atcatcggattgatt-atcggtttcacggatctcgaaa-tgaaaaaccatgaaccaaaccaaactagaccggtttcgattggttcggatcggtttcaaac 7352467  T
Q  201 cgaaccaaacaaggttggatat 222  Q
    | ||||||| || || ||||||    
T  7352468 caaaccaaataaagtcggatat 7352489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39695364 - 39695148
Alignment:
Q  1 gagaaagtgaatggattaaaaagtattttatgtttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggtt 100  Q
    |||||| ||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||    ||||||||||||||| ||||    
T  39695364 gagaaaatgaatggatgaaaaattattttatgtttaattttgggtctaaccataagtttgtgtgaggtaagataat----gtaaaataaggagtgaggtt 39695269  T
Q  101 atcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaac 200  Q
    |||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||| || ||||||||||| ||||||||||||||    
T  39695268 atcatcagattggttcatcggtttcacggacctcgaaatgaaaaa-ccatgaaccaaaccaaactatatcagtttcgattggttcagatcggtttcaaac 39695170  T
Q  201 cgaaccaaacaaggttggatat 222  Q
    ||||||||||||||| ||||||    
T  39695169 cgaaccaaacaaggtcggatat 39695148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 46993540 - 46993321
Alignment:
Q  1 gagaaagtgaatggattaaaaagtattttatgtt------taattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagt 94  Q
    |||||| |||||||||||||||||||||||||||      ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  46993540 gagaaattgaatggattaaaaagtattttatgttggactttaattttgggcttaaccttaagtttgtgtgaggtacgataatattagtaaaataaggagt 46993441  T
Q  95 gtggttatcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtt 194  Q
    |||||||||||| ||||| || |||||||||||||||||||||| | ||||||||||||||||||||||||||||| || ||||||| ||||||||  ||    
T  46993440 gtggttatcatcggattggttaatcggtttcacggatctcgaaa-tgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcggatcaatt 46993342  T
Q  195 tcaaaccgaaccaaacaaggt 215  Q
    ||||||||| |||||||||||    
T  46993341 tcaaaccgacccaaacaaggt 46993321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 7995233 - 7995018
Alignment:
Q  1 gagaaagtgaatggattaaaaagtattttatgtt-----taattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtg 95  Q
    |||||| |||||||||||||||||||| ||||||     ||||||||| ||||||||||||||||||  ||||| |||||||||||||||||||||||||    
T  7995233 gagaaaatgaatggattaaaaagtattctatgttgactttaattttgg-cctaaccataagtttgtg--aggtaagataatattagtaaaataaggagtg 7995137  T
Q  96 tggttatcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggttt 195  Q
    ||||||| ||| ||||| ||||||||||||||| ||||| ||| | |||||||||||||||||||||||||||||||| || |||||||||||||| |||    
T  7995136 tggttattatcggattggttcatcggtttcacgaatctc-aaaatgaaaaaccatgaaccaaaccaaactagatcggtttcaattggttcggatcgattt 7995038  T
Q  196 caaaccgaaccaaacaaggt 215  Q
      ||||||||||||||||||    
T  7995037 tcaaccgaaccaaacaaggt 7995018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 11727326 - 11727410
Alignment:
Q  99 ttatcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggtt 184  Q
    |||||||| ||||| || |||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||| | ||||||||    
T  11727326 ttatcatcggattggtttatcggttttacggatctcgaaatgaaaaa-ccacgaaccaaaccaaactagatcggttttgattggtt 11727410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 35738033 - 35738177
Alignment:
Q  5 aagtgaatggattaaaaagtattttatgtt------taattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtgg 98  Q
    |||||||||||||||  |||||||||||||      ||||||||||||||| |||||||  |||||| |  ||||||||||||||||||  |||||| ||    
T  35738033 aagtgaatggattaaggagtattttatgttggaatttaattttgggcctaatcataagt--gtgtgatgagggataatattagtaaaatggggagtgggg 35738130  T
Q  99 ttatcatcagattgattcatcggtttcacggatctcgaaattaaaaa 145  Q
    |||  ||||| ||| || ||||||| |  ||||||| |||| |||||    
T  35738131 ttacaatcagtttggttgatcggttccttggatctcaaaatgaaaaa 35738177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 221
Target Start/End: Original strand, 46265238 - 46265422
Alignment:
Q  34 ttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggttatcatcagattgattcatcggtttcacggatct 133  Q
    |||||||||||| ||| |||||||  |||||||| |||| |||| ||||||||| |||||||  |||| |||    ||| ||||||||||||  ||||||    
T  46265238 ttaattttgggcataatcataagt--gtgtgaggaaggacaataatagtaaaatgaggagtggagttaacattgatttggttcatcggtttcttggatct 46265335  T
Q  134 cgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaaggttggata 221  Q
    | |||| | |||   |  ||||||||||||| |||||||| | ||||| ||||| |||||||  |||||||||  ||||||| |||||    
T  46265336 caaaatgacaaactgaa-aaccaaaccaaacaagatcggtttagattgattcggttcggttttgaaccgaacccgacaaggtcggata 46265422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 207
Target Start/End: Original strand, 2197614 - 2197775
Alignment:
Q  45 cctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggttatcatcagattgattcatcggtttcacggatctcgaaattaaaa 144  Q
    ||||| || |||| |||| |||| |||||||||||||||||||  ||||||  |||| |||| | ||| || |||||||||  ||||||| ||| | |||    
T  2197614 cctaagcacaagtgtgtgcgaggaaggataatattagtaaaatggggagtgaagttagcatcggtttggttgatcggtttcttggatctc-aaaatgaaa 2197712  T
Q  145 aaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaacca 207  Q
    ||||  ||||| || ||||| || ||| | | ||||||||| |||||||||  ||||||||||    
T  2197713 aaccgagaacccaatcaaacaaggtcgatttagattggttcagatcggtttagaaccgaacca 2197775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 2923125 - 2923024
Alignment:
Q  115 tcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaagg 214  Q
    |||||||||||  ||||||| |||| ||||| | | ||||| || ||||| || ||||| | ||||||||||| |||||||  |||||||||| ||||||    
T  2923125 tcatcggtttcttggatctcaaaatgaaaaatcaa-gaaccgaatcaaacaaggtcggtgtagattggttcggttcggttttgaaccgaaccatacaagg 2923027  T
Q  215 ttg 217  Q
    |||    
T  2923026 ttg 2923024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 215
Target Start/End: Original strand, 25545139 - 25545320
Alignment:
Q  33 tttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggttatcatcagattgattcatcggtttcacggatc 132  Q
    |||||||||| || ||| ||||||| | ||||||| |||||||||||| ||||||  |||||| ||||| |||  | | ||||||| ||||    ||||     
T  25545139 tttaattttgagcttaatcataagtgtatgtgaggcaggataatattactaaaatggggagtgaggttagcattggttcgattcattggttctttggatt 25545238  T
Q  133 tcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaaggt 215  Q
    |  |||||||||    | ||||||||||||||||||||||| | | ||||||  | |||||||  ||||||||||| ||||||    
T  25545239 ttaaaattaaaagttga-gaaccaaaccaaactagatcggtttaggttggtttagttcggttttgaaccgaaccaatcaaggt 25545320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 156; Significance: 2e-82; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 474 - 691
Alignment:
Q  1 gagaaagtgaatggattaaaaagtattttatgtt------taattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagt 94  Q
    ||||||||||||||||||||||||||||||||||      |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  474 gagaaagtgaatggattaaaaagtattttatgttggactttaattttgagcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagt 573  T
Q  95 gtggttatcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtt 194  Q
    |||||||||||| ||||| ||||||||||||||||||||| ||| | ||||||||||||||||| |||||||||||||| || |||||||||||||||||    
T  574 gtggttatcatcggattggttcatcggtttcacggatctc-aaaatgaaaaaccatgaaccaaatcaaactagatcggtttcaattggttcggatcggtt 672  T
Q  195 tcaaaccgaaccaaacaag 213  Q
    |||||||||||||||||||    
T  673 tcaaaccgaaccaaacaag 691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 156; Significance: 2e-82; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 24466209 - 24466426
Alignment:
Q  1 gagaaagtgaatggattaaaaagtattttatgtt------taattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagt 94  Q
    ||||||||||||||||||||||||||||||||||      |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24466209 gagaaagtgaatggattaaaaagtattttatgttggactttaattttgagcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagt 24466308  T
Q  95 gtggttatcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtt 194  Q
    |||||||||||| ||||| ||||||||||||||||||||| ||| | ||||||||||||||||| |||||||||||||| || |||||||||||||||||    
T  24466309 gtggttatcatcggattggttcatcggtttcacggatctc-aaaatgaaaaaccatgaaccaaatcaaactagatcggtttcaattggttcggatcggtt 24466407  T
Q  195 tcaaaccgaaccaaacaag 213  Q
    |||||||||||||||||||    
T  24466408 tcaaaccgaaccaaacaag 24466426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 28319190 - 28319400
Alignment:
Q  1 gagaaagtgaatggattaaaaagtattttatgtttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggtt 100  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28319190 gagaaagtgaattgattaaaaaatattttatgtttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggtt 28319289  T
Q  101 atcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaac 200  Q
    ||||||||||||||||||| | |||||| ||||||||| | |||||||||||||||||||||| || |||| | | |||||||||||| |||||||||||    
T  28319290 atcatcagattgattcatcaggttcacgaatctcgaaa-tgaaaaaccatgaaccaaaccaaattaaatcgattttgattggttcggaacggtttcaaac 28319388  T
Q  201 cgaaccaaacaa 212  Q
    ||||||||||||    
T  28319389 cgaaccaaacaa 28319400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 23107801 - 23108031
Alignment:
Q  1 gagaaagtgaatggattaaaaagtattttatgtt------taattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagt 94  Q
    ||||||||||||||||||||||||||||||||||      |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23107801 gagaaagtgaatggattaaaaagtattttatgttggactttaattttgagcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagt 23107900  T
Q  95 gtggttatcatcagattga----ttcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatc 190  Q
     ||||||||||| ||||||    ||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  23107901 atggttatcatcggattgattggttcatcggtttcacggatctcgaaa-tgaaaaaccatgaatcaaaccaaactagatcggtttcgattggttcggatc 23107999  T
Q  191 ggtttcaaaccgaaccaaacaaggttggatat 222  Q
    ||||||||||| ||||||||||||| ||||||    
T  23108000 ggtttcaaaccaaaccaaacaaggtcggatat 23108031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 60 - 222
Target Start/End: Complemental strand, 4413681 - 4413520
Alignment:
Q  60 gtgtgaggtaggataatattagtaaaataaggagtgtggttatcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaac 159  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||| | |||||||||||||||||     
T  4413681 gtgtgaggtaggataatactagtaaaataaggagtgtgattatcatcggattggtttatcggtttcacggatctcgaaa-tgaaaaaccatgaaccaaag 4413583  T
Q  160 caaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaaggttggatat 222  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| | ||||||    
T  4413582 caaactagatcggtttcgattggttcggatcggttttaaaccgaaccaaacaagatcggatat 4413520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 53393204 - 53393274
Alignment:
Q  151 gaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaaggttggata 221  Q
    ||||| ||||||||||||||||| | | ||||||||| || |||| ||||||||||||||||||| |||||    
T  53393204 gaaccgaaccaaactagatcggtttaggttggttcggttcagttttaaaccgaaccaaacaaggtcggata 53393274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8606028 - 8606251
Alignment:
Q  1 gagaaagtgaatggattaaaaagtattttatgtt------taattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagt 94  Q
    ||||||||||||| |||||  |||||||||||||      |||||||||||||||  ||||||  || |||||    || |||||||||||||  |||||    
T  8606028 gagaaagtgaatgaattaaggagtattttatgttggactttaattttgggcctaataataagt--gtatgaggagaaattatattagtaaaatggggagt 8606125  T
Q  95 gtggttatcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtt 194  Q
    ||||||| |||| | | ||||||| |||| |  ||||||| ||| | ||||||   ||||| |||||| | |||||||| | ||||||||||  | ||||    
T  8606126 gtggttaccatcggttcgattcattggttccttggatctc-aaaatgaaaaactgagaaccgaaccaaccaagatcggtttagattggttcgatttggtt 8606224  T
Q  195 tcaaaccgaaccaaacaaggttggata 221  Q
    |  |||||| |||||||| ||||||||    
T  8606225 ttgaaccgagccaaacaaagttggata 8606251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 150; Significance: 6e-79; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31111699 - 31111479
Alignment:
Q  1 gagaaagtgaatggattaaaaagtattttatgtttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggtt 100  Q
    ||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  31111699 gagaaagtgaatgaattaaaaagtattttatatttaattttgcgcctaaccataattttgtgtgaggtaggataatattagtaaaataagaagtgtggtt 31111600  T
Q  101 atcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaac 200  Q
    |||| ||||||| || |||||||||| ||||||| ||| | |||||||||||||||||||||||||||||||| || |||||||| |||| |||||||||    
T  31111599 atcaccagattggtttatcggtttcaaggatctc-aaaatgaaaaaccatgaaccaaaccaaactagatcggtttcaattggttcagatcagtttcaaac 31111501  T
Q  201 cgaaccaaacaaggttggatat 222  Q
    ||||||||||||||| ||||||    
T  31111500 cgaaccaaacaaggtcggatat 31111479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 13852169 - 13852379
Alignment:
Q  1 gagaaagtgaatggattaaaaagtattttatgtttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggtt 100  Q
    |||||||||||||||||||||| |||||||||||||||||||| | ||||| ||||||||||||||||| |||||||||| |||||||||||||||||||    
T  13852169 gagaaagtgaatggattaaaaaatattttatgtttaattttggtcataaccttaagtttgtgtgaggtaagataatattaataaaataaggagtgtggtt 13852268  T
Q  101 atcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaac 200  Q
    |||| ||||||| ||||||||||||||||||||| ||| | |||||| ||||||||||||||||||||||||| | |||||||| |||||||||||||||    
T  13852269 atcaacagattggttcatcggtttcacggatctc-aaaatgaaaaactatgaaccaaaccaaactagatcggttttgattggtttggatcggtttcaaac 13852367  T
Q  201 cgaaccaaacaa 212  Q
    |||| |||||||    
T  13852368 cgaatcaaacaa 13852379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 36009453 - 36009278
Alignment:
Q  1 gagaaagtgaatggattaaaaagtattttatgtttaattttgggcctaaccataagtttgtgtgaggtag--------gataatattagtaaaataagga 92  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||| | ||||||| ||||||        ||||||||||||||||||||||    
T  36009453 gagaaagtgaatggattaaaaattattttatgtttaattttggacctaaccatgaatttgtgtaaggtagaaatgtaggataatattagtaaaataagga 36009354  T
Q  93 gtgtggttatcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagat 169  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||    
T  36009353 gtgtggttatcatcggattgattcatcggtttcatggatctcgaaa-tgaaaaaccatgaaccaaaccaaactagat 36009278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 33 - 222
Target Start/End: Complemental strand, 4638417 - 4638220
Alignment:
Q  33 tttaattttgggcctaaccataagtttgtgtgag-----gtaggataatattagtaaaa----taaggagtgtggttatcatcagattgattcatcggtt 123  Q
    |||||||||||| |||||||||| ||||||||||     | ||||||||||||||||||    |||||||||||||||||||| ||||| ||||||||||    
T  4638417 tttaattttgggtctaaccataattttgtgtgagtgtgaggaggataatattagtaaaagaattaaggagtgtggttatcatcggattggttcatcggtt 4638318  T
Q  124 tcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaaggttggatat 222  Q
    ||||||||||| |||| ||||| |||||||||||||||||||| ||| |||| ||||||||||||||| |||||||||||||| |||||||| ||||||    
T  4638317 tcacggatctcaaaatgaaaaa-ccatgaaccaaaccaaactaaatcagtattgattggttcggatcgatttcaaaccgaaccgaacaaggtcggatat 4638220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 38607254 - 38607032
Alignment:
Q  8 tgaatggattaaaaagtattttatgtt-----taattttgggcctaaccataagttt----gtgtgaggtaggataatattagtaaaataaggagtgtgg 98  Q
    ||||||||||||| |||||||||||||     ||||||||||||||| ||||||| |    ||||||||  |||||| |||||||||||   ||||||||    
T  38607254 tgaatggattaaatagtattttatgttggacttaattttgggcctaatcataagtgtttgcgtgtgaggagggataacattagtaaaatggcgagtgtgg 38607155  T
Q  99 ttatcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaa 198  Q
    ||| ||||| || | ||||||||||| | ||||||| ||| | |||||||| ||||| |||||||| || || || | ||||||||||| |||||||  |    
T  38607154 ttagcatcaaatcggttcatcggttttatggatctc-aaaatgaaaaaccaagaaccgaaccaaacaaggtcagtttagattggttcggttcggttttga 38607056  T
Q  199 accgaaccaaacaaggttggatata 223  Q
    | |||| |||||||||| |||||||    
T  38607055 atcgaa-caaacaaggtcggatata 38607032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 29109056 - 29109281
Alignment:
Q  1 gagaaagtgaatggattaaaaagtattttatgtt------taattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagt 94  Q
    ||||||||||||| |||||  |||||||||||||      |||||||| || |||  |||| | |||||||||  ||||||||||| ||||||  | ||     
T  29109056 gagaaagtgaatgaattaaggagtattttatgttggactttaattttgagcttaattataattgtgtgtgaggggggataatattactaaaatgggaagg 29109155  T
Q  95 gtggttatcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtt 194  Q
      ||||| ||||   ||| ||||||||||    ||||||| |||||||||| | | ||||||||||||||||||| ||| | | ||| ||||| ||||||    
T  29109156 aaggttagcatcgatttggttcatcggttctttggatctcaaaattaaaaaccga-gaaccaaaccaaactagattggtttaggttgcttcggttcggtt 29109254  T
Q  195 tcaaaccgaaccaaacaaggttggata 221  Q
    |  ||| |||||||||||||| |||||    
T  29109255 ttgaactgaaccaaacaaggtcggata 29109281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 3919904 - 3919965
Alignment:
Q  151 gaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaa 212  Q
    ||||||||||||||||||||||| | | ||||||||| |||||||  |||| ||||||||||    
T  3919904 gaaccaaaccaaactagatcggtttagtttggttcggttcggttttgaaccaaaccaaacaa 3919965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 148; Significance: 9e-78; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 19947984 - 19947774
Alignment:
Q  11 atggattaaaaagtattttatgtttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggttatcatcagat 110  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  19947984 atggattaaaaagtatcttatgtttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggttatcatcggat 19947885  T
Q  111 tgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaac 210  Q
    || |||||||||||||||||||| |||| | ||||||||||||||||| |||| |||||| |  |||||||||| ||||||||||||||| |||||||||    
T  19947884 tggttcatcggtttcacggatcttgaaa-tgaaaaaccatgaaccaaatcaaagtagatcagattcgattggtttggatcggtttcaaactgaaccaaac 19947786  T
Q  211 aaggttggatat 222  Q
    || || ||||||    
T  19947785 aatgtcggatat 19947774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 37 - 222
Target Start/End: Original strand, 16746357 - 16746541
Alignment:
Q  37 attttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggttatcatcagattgattcatcggtttcacggatctcga 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| |||||||||||||||    
T  16746357 attttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgaggttatcatcggattggttcatcgatttcacggatctcga 16746456  T
Q  137 aattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaaggttggatat 222  Q
    || | |||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  16746457 aa-tgaaaaaccatgaatcaaaccaaactagatcggtttcgattggtttggatcggtttcaaaccgaaccaaacaaggttggatat 16746541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31896175 - 31895962
Alignment:
Q  1 gagaaagtgaatggattaaaaagtattttatgtt------taattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagt 94  Q
    |||||||||||||||||| ||| |||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31896175 gagaaagtgaatggattataaaatattttatgttggactttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagt 31896076  T
Q  95 gtggttatcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtt 194  Q
    ||||||||||||             ||||||||||||| |||||| |||||| |||||||||||||||||||||||||| | ||||||||| ||||||||    
T  31896075 gtggttatcatc-------------ggtttcacggatcacgaaat-aaaaaatcatgaaccaaaccaaactagatcggtttggattggttcagatcggtt 31895990  T
Q  195 tcaaaccgaaccaaacaaggttggatat 222  Q
    ||||||||||||||||||||| ||||||    
T  31895989 tcaaaccgaaccaaacaaggtcggatat 31895962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 16746553 - 16746660
Alignment:
Q  114 ttcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaag 213  Q
    ||||||| |||||||||||||||||| |||| |||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  16746553 ttcatcgatttcacggatctcgaaatgaaaa-accatgaatcaaaccaaactagatcggtttcgattggtttggatcggtttcaaaccgaaccaaacaag 16746651  T
Q  214 gttggatat 222  Q
    |||||||||    
T  16746652 gttggatat 16746660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 2e-66; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 34 - 222
Target Start/End: Complemental strand, 46655768 - 46655581
Alignment:
Q  34 ttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggttatcatcagattgattcatcggtttcacggatct 133  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||  ||||| ||||||||||||||||||||    
T  46655768 ttaattttgggcctaaccataaatttgtgtgaggtaggataatattagtaaaataagaagtgtggttatcattggattggttcatcggtttcacggatct 46655669  T
Q  134 cgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaaggttggatat 222  Q
    ||||| | ||||| |||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||  ||||| ||||||    
T  46655668 cgaaa-tgaaaaagcatgaaccaaaccaaactagattggttttgattggttcggatcggtttcaaaccgaaccaagtaaggtcggatat 46655581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 33 - 221
Target Start/End: Complemental strand, 44471271 - 44471084
Alignment:
Q  33 tttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggttatcatcagattgattcatcggtttcacggatc 132  Q
    |||||||||| || ||| ||||||| ||| |||||  ||||||||||| |||| |  |||||   |||| |||| | | | ||||||||||    ||||     
T  44471271 tttaattttgagcttaatcataagtgtgtttgaggagggataatattactaaactggggagttatgttagcatcggttcggttcatcggttctttggatt 44471172  T
Q  133 tcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaaggttggata 221  Q
    || |||||||||| ||| ||||| ||||||||||||||||| | |||||||| || |||||||  |||||||| ||||||||| |||||    
T  44471171 tcaaaattaaaaa-ccaagaaccgaaccaaactagatcggtttagattggtttggttcggttttgaaccgaactaaacaaggtcggata 44471084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 221
Target Start/End: Original strand, 11503284 - 11503445
Alignment:
Q  59 tgtgtgaggtaggataatattagtaaaataaggagtgtggttatcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaa 158  Q
    |||||||||  |||||||| |||||||||  |||||| ||||| |||  | | | || |||||||||  ||||||| |||| ||||| | | ||||||||    
T  11503284 tgtgtgaggagggataataatagtaaaatggggagtgaggttagcatgggttcggtttatcggtttcttggatctcaaaatgaaaaatcga-gaaccaaa 11503382  T
Q  159 ccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaaggttggata 221  Q
    |||||  |||||||| ||||||||||||| |||||||  ||||  |||| ||||||| |||||    
T  11503383 ccaaataagatcggtttcgattggttcggttcggttttgaaccttaccagacaaggtcggata 11503445  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 30554588 - 30554658
Alignment:
Q  151 gaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaaggttggata 221  Q
    ||||| ||||||||||||||||| | ||||||||||| ||| |||  |||||||| ||||||||| |||||    
T  30554588 gaaccgaaccaaactagatcggtttagattggttcggttcgattttgaaccgaactaaacaaggtcggata 30554658  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 779538 - 779617
Alignment:
Q  142 aaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaaggttggata 221  Q
    |||||||| ||||| ||||||||||||| ||| | | ||||||||  || ||||  |||||||| |||||||||||||||    
T  779538 aaaaaccaagaaccgaaccaaactagattggtttaggttggttcgattctgttttgaaccgaactaaacaaggttggata 779617  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 44682037 - 44682111
Alignment:
Q  142 aaaaaccatgaaccaaaccaaactagatcggtat-cgattggttcggatcggtttcaaaccgaaccaaacaaggt 215  Q
    |||||||| ||||||||||||||||||||||| |  | ||||||| | |||||||  | ||||||||||||||||    
T  44682037 aaaaaccaagaaccaaaccaaactagatcggtttaggtttggttcagttcggttttgatccgaaccaaacaaggt 44682111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 46892715 - 46892670
Alignment:
Q  177 gattggttcggatcggtttcaaaccgaaccaaacaaggttggatat 222  Q
    |||||||| || ||||||| ||||||||||||||||||| ||||||    
T  46892715 gattggtttggttcggttttaaaccgaaccaaacaaggtcggatat 46892670  T

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Target: scaffold0565 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1741 - 1964
Alignment:
Q  1 gagaaagtgaatggattaaaaagtattttatgtt------taattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagt 94  Q
    ||||||||||||||||||||||||||||||||||      |||||||   ||||||||||||||||||  |||||| |||||||||||||||||||||||    
T  1741 gagaaagtgaatggattaaaaagtattttatgttggattttaattttaa-cctaaccataagtttgtg--aggtagaataatattagtaaaataaggagt 1837  T
Q  95 gtggttatcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtt 194  Q
    || ||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||| || | ||||||||| ||||| ||    
T  1838 gttgttatcatcggattggttcatcggtttcacgaatctcgaaatt-aaaaaccatgaaccaaaccaaagtagatcagttttgattggttccgatcgatt 1936  T
Q  195 tcaaaccgaaccaaacaaggttggatat 222  Q
    ||||||||||||||||||||| ||||||    
T  1937 tcaaaccgaaccaaacaaggtcggatat 1964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 33 - 221
Target Start/End: Complemental strand, 11846494 - 11846307
Alignment:
Q  33 tttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggttatcatcagattgattcatcggtttcacggatc 132  Q
    |||||||||| || ||| ||||||| |||||||||  ||||||||||| ||||||  |||||| || || |||||  ||| ||||| ||||    |||||    
T  11846494 tttaattttgagcttaatcataagtgtgtgtgaggagggataatattactaaaatggggagtgaggatagcatcaatttggttcattggttcattggatc 11846395  T
Q  133 tcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaaggttggata 221  Q
    || |||||||||| | | ||||| ||||||||||||||||| |   ||||||| | |||||||  |||| ||||||||||||| |||||    
T  11846394 tcaaaattaaaaaccga-gaaccgaaccaaactagatcggtttaagttggttcagttcggttttgaaccaaaccaaacaaggtcggata 11846307  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 125
Target Start/End: Complemental strand, 1208848 - 1208720
Alignment:
Q  3 gaaagtgaatggattaaaaagtattttatg------tttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgt 96  Q
    ||||||||||| |||||  |||||||||||      |||||||||||||||||  |||||| ||||||| |  |||||| |||||||||| ||||||||     
T  1208848 gaaagtgaatgaattaagtagtattttatgctgaactttaattttgggcctaatgataagtgtgtgtgaagagggataacattagtaaaacaaggagtgg 1208749  T
Q  97 ggttatcatcagattgattcatcggtttc 125  Q
    ||||| |||||  | ||||||| ||||||    
T  1208748 ggttagcatcaattcgattcattggtttc 1208720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 9827029 - 9826816
Alignment:
Q  1 gagaaagtgaatggattaaaaagtattttatgtt------taattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagt 94  Q
    ||||||||||||| |||||  |||||||||||||      |||| ||| || ||| ||||||  |||||||||  ||||||||||| |||||   | |||    
T  9827029 gagaaagtgaatgaattaaggagtattttatgttggactttaatattgagcttaatcataagcgtgtgtgaggagggataatattactaaaacgggaagt 9826930  T
Q  95 gtggttatcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtt 194  Q
    | ||||| |||||| ||| ||||||||||    |||| || |||||||||| | | ||| | ||||||||||||||||| |   ||||||||| ||||||    
T  9826929 gaggttaacatcagtttggttcatcggttctttggatttcaaaattaaaaaccga-gaatcgaaccaaactagatcggtttatgttggttcggttcggtt 9826831  T
Q  195 tcaaaccgaaccaaa 209  Q
    |  ||||||||||||    
T  9826830 ttcaaccgaaccaaa 9826816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 7176529 - 7176598
Alignment:
Q  152 aaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaaggttggata 221  Q
    |||| ||||||||||||||||| | | ||||||||| ||| |||  |||| |||||||||||||||||||    
T  7176529 aaccgaaccaaactagatcggtttaggttggttcggttcgattttgaaccaaaccaaacaaggttggata 7176598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 23301548 - 23301484
Alignment:
Q  151 gaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaaggt 215  Q
    ||||| |||||||||||||| || | | ||||||||| |||||||  ||||||||||||||||||    
T  23301548 gaaccgaaccaaactagatcagtttaggttggttcggttcggttttgaaccgaaccaaacaaggt 23301484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 2 - 215
Target Start/End: Complemental strand, 14037 - 13819
Alignment:
Q  2 agaaagtgaatggattaaaaagtattttatg------tttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtg 95  Q
    ||||||||||||||||||  |||| ||||||      ||||||||||||| ||  ||||||| ||||||| |  | |||||| |||||||||  ||||||    
T  14037 agaaagtgaatggattaagtagtactttatgctgggctttaattttgggcatactcataagtgtgtgtgaagaggtataataatagtaaaatggggagtg 13938  T
Q  96 tggttatcatcagattgattcatcggtttcacggatctcgaaattaaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggttt 195  Q
     ||||| |||| | | |||||||||||||   ||||||| |||| ||||| | || ||||||||||||  ||||| || | ||||||||||| ||| |||    
T  13937 aggttagcatcggttcgattcatcggtttattggatctcaaaatgaaaaaccgat-aaccaaaccaaataagatcagtttagattggttcggttcgattt 13839  T
Q  196 caaaccgaaccaaacaaggt 215  Q
      ||| |||||| |||||||    
T  13838 tgaactgaaccagacaaggt 13819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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