View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8417_low_16 (Length: 282)
Name: NF8417_low_16
Description: NF8417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8417_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 36878616 - 36878789
Alignment:
| Q |
15 |
aatactgttagtttttccatttatgggtatcatctacaaggaatgatgtaccgatatgcatagctgagtgttagaggagattgtcaggaaaaatgatgtg |
114 |
Q |
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| T |
36878616 |
aatactgttagcttttcaatttatgggtatcatctacaaggaatgatgtaccgataagcatagctgagtgttagaggagattgtcaggaaaaatgatgtg |
36878715 |
T |
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| Q |
115 |
ttcttatgtcttccatagcatatataatcatggcatatgtgatttcttgatggtgaagttttttcaaacaactt |
188 |
Q |
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| T |
36878716 |
ttcttatgtcttccatagcatatataatcatggcatatgtgatttcttgacggtgaagttttttcaaacaactt |
36878789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 36878073 - 36878198
Alignment:
| Q |
27 |
ttttccatttatgggtatcatctacaaggaatgatgtaccgatatgcatagctgagtgttagaggagattgtcaggaaaaatgatgtgttcttatgtctt |
126 |
Q |
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| T |
36878073 |
ttttccatctatgggtatcatctacaataaatgatgtgccaataagcacagctgagtgttagaatagattgtcaggaaaaatgttgtattctcatgtctt |
36878172 |
T |
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| Q |
127 |
ccatagcatatataatcatggcatat |
152 |
Q |
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| T |
36878173 |
ccttggcatatataatcacggcatat |
36878198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 36878891 - 36878956
Alignment:
| Q |
194 |
cgtcgaattgtaactgctgctgagcatcctcatttaagcattccagaaactgaggctggaaagacc |
259 |
Q |
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| T |
36878891 |
cgtcgaattgtaactgctgccgagcatcctcatttaagcattccagaaactgaagctggaaagacc |
36878956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 14772197 - 14772143
Alignment:
| Q |
197 |
cgaattgtaactgctgctgagcatcctcatttaagcattccagaaactgaggctg |
251 |
Q |
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| T |
14772197 |
cgaattgtaactgctgctgagcaacctcatttaagcattccaaaaactgaagctg |
14772143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 17878933 - 17878877
Alignment:
| Q |
199 |
aattgtaactgctgctgagcatcctcatttaagcattccagaaactgaggctggaaa |
255 |
Q |
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| T |
17878933 |
aattgtaagtgctgctgagcaccctcatttaagcattccagtaactgaagctggaaa |
17878877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 15046312 - 15046254
Alignment:
| Q |
197 |
cgaattgtaactgctgctgagcatcctcatttaagcattccagaaactgaggctggaaa |
255 |
Q |
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| T |
15046312 |
cgaattgtaagtgctgctgagcctcctcatttaagtattccggaaactgaagctggaaa |
15046254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 51365277 - 51365220
Alignment:
| Q |
198 |
gaattgtaactgctgctgagcatcctcatttaagcattccagaaactgaggctggaaa |
255 |
Q |
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| T |
51365277 |
gaattgtaaccgctgctgagcaccctcatttaagcattcctaaaactgaagttggaaa |
51365220 |
T |
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