View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8417_low_18 (Length: 260)
Name: NF8417_low_18
Description: NF8417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8417_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 40528660 - 40528413
Alignment:
| Q |
1 |
catcacatatacatccatttcatgtcacacattgttactactaaaaggacaaacccacgagtgctgaccaaatcactacacaatccaagtgtaaccctac |
100 |
Q |
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| T |
40528660 |
catcacatatacatccatttcatgtcacacattgttactactaaaaggacaaacccacgagtgctgaccaaatcactacacaatccaagtgtaaccctac |
40528561 |
T |
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| Q |
101 |
aatatttgannnnnnncttagaaaagtaaatactttaatctgattttgtcaatttaatttgggtgc-aaaaagttaacttcaattccttacaaaataata |
199 |
Q |
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| T |
40528560 |
aatatttga-ttttttcttagaaaagtaaatactttaatctgattttgtcaatttaatttgggtgcttaaaagttaactttaattcgttacaaaataata |
40528462 |
T |
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| Q |
200 |
ctctttccgactttaattgtaagatcatttataagtctgtttgataaac |
248 |
Q |
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| T |
40528461 |
ctctttccgactttaatcgtaagatcatttatgggtctgtttgataaac |
40528413 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 31500126 - 31500094
Alignment:
| Q |
198 |
tactctttccgactttaattgtaagatcattta |
230 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
31500126 |
tactctctccgactttaattgtaagatcattta |
31500094 |
T |
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