View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8417_low_20 (Length: 238)

Name: NF8417_low_20
Description: NF8417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8417_low_20
NF8417_low_20
[»] chr2 (8 HSPs)
chr2 (5-226)||(35036977-35037191)
chr2 (139-222)||(35019435-35019518)
chr2 (104-222)||(36288386-36288504)
chr2 (147-222)||(35033150-35033225)
chr2 (144-226)||(35008874-35008956)
chr2 (141-219)||(35012412-35012490)
chr2 (162-222)||(35026156-35026216)
chr2 (163-215)||(34998928-34998980)
[»] chr4 (2 HSPs)
chr4 (161-225)||(30595269-30595333)
chr4 (161-225)||(30612617-30612681)


Alignment Details
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 226
Target Start/End: Complemental strand, 35037191 - 35036977
Alignment:
Q  5 ctacttttatagttttcattattatatgcttaatttttt-attgttttctagagtctgctagatccagaattc-tctgtattttatataagaccttataa 102  Q
    ||||||||||| || | |||||||||||||||||||||| |||||||| |||||| ||||||||||||||||| ||| ||||||||||| ||||||||||    
T  35037191 ctacttttatatttgtgattattatatgcttaatttttttattgttttgtagagtatgctagatccagaattcctctttattttatata-gaccttataa 35037093  T
Q  103 gttataagcatagagacattgctaaggaattcagaaaatagcagccatggatgctccttctcctttgcatatagcaatgtttccatggtttgcaatggga 202  Q
    |       || ||| ||||||||||| | |||||| || ||||||||||||  | || ||| ||||||| ||||||||||||||||||||||||||||||    
T  35037092 g-------cagagaaacattgctaagtagttcagacaa-agcagccatggagtcaccatcttctttgcacatagcaatgtttccatggtttgcaatggga 35037001  T
Q  203 cacttaactccatatcttcatctc 226  Q
    ||||||||||||||||||||||||    
T  35037000 cacttaactccatatcttcatctc 35036977  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 35019518 - 35019435
Alignment:
Q  139 aatagcagccatggatgctccttctcctttgcatatagcaatgtttccatggtttgcaatgggacacttaactccatatcttca 222  Q
    ||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35019518 aatagcagtaatggatgctccttctcctttgcacatagcaatgtttccatggtttgctatgggacacttaactccatatcttca 35019435  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 36288386 - 36288504
Alignment:
Q  104 ttataagcatagagacattgctaaggaattcagaaaatagcagccatggatgctccttctcctttgcatatagcaatgtttccatggtttgcaatgggac 203  Q
    ||||||||| ||||| ||||| ||| ||||||||||||||||||| ||||| | | |||| ||||||| |||||||||| ||||||||||||||||||||    
T  36288386 ttataagcagagagatattgccaagtaattcagaaaatagcagccttggatccacattcttctttgcacatagcaatgtctccatggtttgcaatgggac 36288485  T
Q  204 acttaactccatatcttca 222  Q
    || ||| ||||||||||||    
T  36288486 acctaattccatatcttca 36288504  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 35033150 - 35033225
Alignment:
Q  147 ccatggatgctccttctcctttgcatatagcaatgtttccatggtttgcaatgggacacttaactccatatcttca 222  Q
    |||||||||||||| ||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35033150 ccatggatgctcctcctcctttacacatagcaatgtttccatggtttgctatgggacacttaactccatatcttca 35033225  T

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Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 144 - 226
Target Start/End: Original strand, 35008874 - 35008956
Alignment:
Q  144 cagccatggatgctccttctcctttgcatatagcaatgtttccatggtttgcaatgggacacttaactccatatcttcatctc 226  Q
    ||||||||||  | || ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35008874 cagccatggagtcaccatcttctttgcacatagcaatgtttccatggtttgcaatgggacacttaactccatatcttcatctc 35008956  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 35012490 - 35012412
Alignment:
Q  141 tagcagccatggatgctccttctcctttgcatatagcaatgtttccatggtttgcaatgggacacttaactccatatct 219  Q
    |||||||||||||||||| | ||||| |||||||| ||||||||||||||||||| |||||||| || || ||||||||    
T  35012490 tagcagccatggatgctcttcctcctatgcatatatcaatgtttccatggtttgctatgggacatttcaccccatatct 35012412  T

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Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 35026156 - 35026216
Alignment:
Q  162 ctcctttgcatatagcaatgtttccatggtttgcaatgggacacttaactccatatcttca 222  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||    
T  35026156 ctcctttgcacatagcaatgtttccatggtttgctatgggacacttcaccccatatcttca 35026216  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 34998980 - 34998928
Alignment:
Q  163 tcctttgcatatagcaatgtttccatggtttgcaatgggacacttaactccat 215  Q
    ||||||||| ||||||||||||||||||||||| |||||||||| ||||||||    
T  34998980 tcctttgcacatagcaatgtttccatggtttgctatgggacactcaactccat 34998928  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 30595333 - 30595269
Alignment:
Q  161 tctcctttgcatatagcaatgtttccatggtttgcaatgggacacttaactccatatcttcatct 225  Q
    |||||||| || |||||||||| |||||||||||||||||| |||  ||||||||  ||||||||    
T  30595333 tctcctttacacatagcaatgtatccatggtttgcaatgggccaccaaactccattccttcatct 30595269  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 30612681 - 30612617
Alignment:
Q  161 tctcctttgcatatagcaatgtttccatggtttgcaatgggacacttaactccatatcttcatct 225  Q
    |||||||| || |||||||||| |||||||||||||||||| |||  ||||||||  ||||||||    
T  30612681 tctcctttacacatagcaatgtatccatggtttgcaatgggccaccaaactccattccttcatct 30612617  T

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