View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8417_low_21 (Length: 234)
Name: NF8417_low_21
Description: NF8417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8417_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 55061623 - 55061552
Alignment:
| Q |
132 |
gcattaacaatttgcatgatgaagatcaaacaagcccatcaatacaaaaaacaacctttgatcgatctatga |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
55061623 |
gcattaacaatttgcatgatgaagatcaaacaagcccatcaatacaaaaaacaacctttgttcgatctatga |
55061552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 40939699 - 40939630
Alignment:
| Q |
137 |
aacaatttgcatgatgaagatcaaacaagcccatcaatacaaa---aaacaacctttgatcgatctatga |
203 |
Q |
| |
|
|||||||||||| ||||||| |||||||| |||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
40939699 |
aacaatttgcatcatgaagaataaacaagctcatcaataaaaataaaaacaacctttgatcgatctatga |
40939630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 40931728 - 40931686
Alignment:
| Q |
140 |
aatttgcatgatgaagatcaaacaagcccatcaatacaaaaaa |
182 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||| |||||| |
|
|
| T |
40931728 |
aatttgtatgatgaagaacaaacaagcccatcaataaaaaaaa |
40931686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University