View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8417_low_3 (Length: 566)
Name: NF8417_low_3
Description: NF8417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8417_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 20 - 558
Target Start/End: Original strand, 4677163 - 4677700
Alignment:
| Q |
20 |
tctttagtcattcatatttatgctatgatcaaaatttatgtttctcctatttaagaaagtgttgttcattgtggtaacaaaacctaaaggttctacttct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4677163 |
tctttagtcattcatatttatgctatgatcaaaatttatgtttctcctatttaagaaagtgttgttcattgtggtaacaaaacctaaaggttctacttct |
4677262 |
T |
|
| Q |
120 |
ttctaatcttagaaaatatattggaagaattcnnnnnnntcacgcttggtatagtaaatcaaccggtaaagaatatgcatgagttttaggnnnnnnnnnt |
219 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4677263 |
ttctaatcttagaaaatatattagaagaattcaaaaaaatcacgcttagtatagtaaatcaaccggtaaagaatatgcatgagttttaggaaaaaaaa-t |
4677361 |
T |
|
| Q |
220 |
actatgtattgtttcaaaattaagttcctacttat---cttgacttgatannnnnnnnnnnnnnncagcttcttttgattatttgaaagatcatgggggt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4677362 |
actatgtattgtttcaaaattaagttcctacttataatcttgacttgatatttttttttttt---cagcttcttttgattatttgaaagatcatgggggt |
4677458 |
T |
|
| Q |
317 |
aaagtatgaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4677459 |
aaagtatgaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaat |
4677558 |
T |
|
| Q |
417 |
gaacaaggcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaa |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4677559 |
gaacaaggcaacaaaacaacaccttcttttgttgcttttactgatgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaa |
4677658 |
T |
|
| Q |
517 |
acactgtctttggtaaatatctatttctattctctgctactc |
558 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4677659 |
acactgtctttggtaaatttctatttctattctctgctactc |
4677700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 298 - 532
Target Start/End: Original strand, 34465148 - 34465382
Alignment:
| Q |
298 |
tttgaaagatcatgggggtaaagtatgaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacag |
397 |
Q |
| |
|
||||||||||||||| | ||| | |||||||||||||||||||||||| ||||| || || || ||||||||||| || |||| ||| | |||| || |
|
|
| T |
34465148 |
tttgaaagatcatggcgaaaaaatgtgaaggacgtgctgtgggaatagaccttggcacaacctactcatgtgttgcagtatggcaggaacaacacagtag |
34465247 |
T |
|
| Q |
398 |
agtggagattatttacaatgaacaaggcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaa |
497 |
Q |
| |
|
||| ||||||||| ||||||| ||||| |||| ||| |||||||||||||||||||||||| | |||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
34465248 |
agtagagattattgacaatgaccaaggtaacacaaccacaccttcttttgttgcttttactcatgatcaaagattgatcggtaatgctgctaagaatcaa |
34465347 |
T |
|
| Q |
498 |
tctgccaccaactctgaaaacactgtctttggtaa |
532 |
Q |
| |
|
|||| |||||| | | |||||||| |||||||| |
|
|
| T |
34465348 |
actgctaccaacccacagaacactgtttttggtaa |
34465382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 339 - 539
Target Start/End: Complemental strand, 15596220 - 15596021
Alignment:
| Q |
339 |
ggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaaggcaacaaaacaacac |
438 |
Q |
| |
|
|||||||| |||||||| || ||||| ||||||||||||||||| || | || || ||||| |||||||| ||||||| ||||| |||| || |||| |
|
|
| T |
15596220 |
ggaatagaccttggaacaacgtattcttgtgttgctgtgtggcttgatgaacagaatagagtcgagattatccacaatgaccaaggaaacagaattacac |
15596121 |
T |
|
| Q |
439 |
cttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaacactgtctttggtaaatatct |
538 |
Q |
| |
|
||||||||||| |||| ||| | |||||||||||||||||| |||||||||||| |||| ||||| || || | ||||||| ||||||||||||| ||| |
|
|
| T |
15596120 |
cttcttttgtttctttcactaatgatcaaaggttgattggtgatgctgctaagagtcaagctgcctccgaccccaaaaacac-gtctttggtaaatttct |
15596022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 324 - 381
Target Start/End: Original strand, 52549023 - 52549080
Alignment:
| Q |
324 |
gaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggc |
381 |
Q |
| |
|
||||||| ||||||||||||||| ||| | ||||| ||||||||||||||||| |||| |
|
|
| T |
52549023 |
gaaggacttgctgtgggaatagacctttgtactacgtattcatgtgttgctgtatggc |
52549080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 8e-84; HSPs: 24)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 282 - 551
Target Start/End: Complemental strand, 1302529 - 1302260
Alignment:
| Q |
282 |
cagcttcttttgattatttgaaagatcatgggggtaaagtatgaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggc |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
1302529 |
cagcttcttttgattatttgaaagatcatggcgataaagtacgaaggacgtgctgttggaatagaccttggaactacttattcgtgtgttgctgtgtggc |
1302430 |
T |
|
| Q |
382 |
tggagaatcacaacagagtggagattatttacaatgaacaaggcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaa |
481 |
Q |
| |
|
||||||||||||| ||||| ||||| || ||||| || |||||||||||||||||||| |||||||||||||| || || |||||||||||||| ||| | |
|
|
| T |
1302429 |
tggagaatcacaatagagtagagatcatctacaacgaccaaggcaacaaaacaacaccgtcttttgttgctttcaccgatgatcaaaggttgatcggtga |
1302330 |
T |
|
| Q |
482 |
tgctgctaagaatcaatctgccaccaactctgaaaacactgtctttggtaaatatctatttctattctct |
551 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||||| ||||| |||||||||| ||| ||| |||||||| |
|
|
| T |
1302329 |
tgctgctaagaatcaggctgcaaccaatcctgaaaatactgtttttggtaaatttctctttgtattctct |
1302260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 282 - 551
Target Start/End: Complemental strand, 8660462 - 8660193
Alignment:
| Q |
282 |
cagcttcttttgattatttgaaagatcatgggggtaaagtatgaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggc |
381 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||| |||||||||||| | |||||||| |||||||| || ||||| |||||||||||||||| |
|
|
| T |
8660462 |
cagcttcttttgattatttgaacgatcatggggataaagtacgaaggacgtgctattggaatagaccttggaacaacctattcgtgtgttgctgtgtggc |
8660363 |
T |
|
| Q |
382 |
tggagaatcacaacagagtggagattatttacaatgaacaaggcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaa |
481 |
Q |
| |
|
||||||||||||| |||| ||||| || ||||| || ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
8660362 |
tggagaatcacaatcgagtcgagatcatctacaacgaccaaggaaacaaaacaacaccttcatttgttgctttcactgacgatcaaaggttgattggtga |
8660263 |
T |
|
| Q |
482 |
tgctgctaagaatcaatctgccaccaactctgaaaacactgtctttggtaaatatctatttctattctct |
551 |
Q |
| |
|
||||||||||||||| |||| ||||| ||| ||||||||| |||||| ||| ||||||| |||||||| |
|
|
| T |
8660262 |
tgctgctaagaatcaggctgcaaccaatcctgtaaacactgtttttggttaatttctatttgtattctct |
8660193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 317 - 538
Target Start/End: Complemental strand, 3148554 - 3148333
Alignment:
| Q |
317 |
aaagtatgaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaat |
416 |
Q |
| |
|
|||||| |||||| |||| |||||||| || |||||||| || ||||| || |||||||| ||||| || | ||||||||||| ||||||||| ||||| |
|
|
| T |
3148554 |
aaagtacgaaggatgtgcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggctcgatgagcacaacagagttgagattattcacaat |
3148455 |
T |
|
| Q |
417 |
gaacaaggcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaa |
516 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||||| ||||||||||||||||| || |||| ||| |||||| |
|
|
| T |
3148454 |
gaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgctgctaagaatcaagctcccacaaaccctgaaa |
3148355 |
T |
|
| Q |
517 |
acactgtctttggtaaatatct |
538 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
3148354 |
acactgtttttggtaaatatct |
3148333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 327 - 551
Target Start/End: Complemental strand, 8655522 - 8655298
Alignment:
| Q |
327 |
ggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaaggca |
426 |
Q |
| |
|
||||||||||| |||||||| || ||||| || ||||||||||||||||||||||| || ||||||| ||||| ||||||||| ||||||| ||||||| |
|
|
| T |
8655522 |
ggacgtgctgtcggaatagacctcggaacaacctattcatgtgttgctgtgtggcttgacgatcacaatagagttgagattattcacaatgatcaaggca |
8655423 |
T |
|
| Q |
427 |
acaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaacactgtctt |
526 |
Q |
| |
|
| | ||| ||||||||| |||||||||| ||||| |||||||||||||||| |||| ||| ||||||||||||| |||||| | ||||||||||| || |
|
|
| T |
8655422 |
atagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatt |
8655323 |
T |
|
| Q |
527 |
tggtaaatatctatttctattctct |
551 |
Q |
| |
|
|||||||| ||||||| |||||||| |
|
|
| T |
8655322 |
tggtaaatttctatttttattctct |
8655298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 324 - 547
Target Start/End: Complemental strand, 8668641 - 8668418
Alignment:
| Q |
324 |
gaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaag |
423 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| || | ||| | ||||| ||||||||| ||||||| |||| |
|
|
| T |
8668641 |
gaaggacgtgcagtgggaatagatcttggaacaacctattcatgtgttgctgtgtggcttgatcaacaccaaagagttgagattattcacaatgatcaag |
8668542 |
T |
|
| Q |
424 |
gcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaacactgt |
523 |
Q |
| |
|
| ||| || ||||||||||||||||||||| | | || |||||||||||||| |||||||||||||||||||||| || ||| ||||||||||| | |
|
|
| T |
8668541 |
gaaaccgaataacaccttcttttgttgctttcaacaatgaacaaaggttgattggcgatgctgctaagaatcaatctgctactaaccctgaaaacactat |
8668442 |
T |
|
| Q |
524 |
ctttggtaaatatctatttctatt |
547 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
8668441 |
ctttggtaaatttctatttctatt |
8668418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 324 - 533
Target Start/End: Complemental strand, 6790586 - 6790377
Alignment:
| Q |
324 |
gaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaag |
423 |
Q |
| |
|
|||||| |||||||||||||||| || ||||| || ||||| ||||||| ||||||||| || | ||||| ||||| ||||||||| ||||||| |||| |
|
|
| T |
6790586 |
gaaggatgtgctgtgggaatagacctgggaacaacatattcttgtgttggtgtgtggcttgatgaacacaatagagttgagattattcacaatgaccaag |
6790487 |
T |
|
| Q |
424 |
gcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaacactgt |
523 |
Q |
| |
|
| |||||||| |||||||||||||||||||| || || || ||||||||||| ||| ||||||||||| ||||| ||||||||||| | |||||||| | |
|
|
| T |
6790486 |
gtaacaaaaccacaccttcttttgttgctttcaccgatgaccaaaggttgatcggtgatgctgctaagtatcaagctgccaccaacccgcaaaacactat |
6790387 |
T |
|
| Q |
524 |
ctttggtaaa |
533 |
Q |
| |
|
||| |||||| |
|
|
| T |
6790386 |
cttcggtaaa |
6790377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 299 - 496
Target Start/End: Original strand, 7876735 - 7876932
Alignment:
| Q |
299 |
ttgaaagatcatgggggtaaagtatgaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacaga |
398 |
Q |
| |
|
||||||||| |||| | ||| || ||||||||||| ||||||||||| |||||||| || ||||| ||||||||||||||||| || | ||||| ||| |
|
|
| T |
7876735 |
ttgaaagattatggcgaaaaaatacgaaggacgtgcggtgggaatagaccttggaacaacgtattcctgtgttgctgtgtggcttgatgaacacaataga |
7876834 |
T |
|
| Q |
399 |
gtggagattatttacaatgaacaaggcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatca |
496 |
Q |
| |
|
|| || |||||| |||||||||||||||||| |||||||||||||||||||||||| || | |||||||||||||||||| ||||||| || ||||| |
|
|
| T |
7876835 |
gtcgaaattattcacaatgaacaaggcaacagaacaacaccttcttttgttgctttcacgaatgatcaaaggttgattggtgatgctgccaaaaatca |
7876932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 289 - 541
Target Start/End: Complemental strand, 8647912 - 8647660
Alignment:
| Q |
289 |
ttttgattatttgaaagatcatgggggtaaagtatgaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaa |
388 |
Q |
| |
|
||||| ||| |||||||||||||| | ||| | ||||||| ||| ||||||||||| |||||||| || ||||| ||||||||||||||||| || | |
|
|
| T |
8647912 |
ttttgtttacttgaaagatcatggcgaaaaaacacgaaggacttgcagtgggaatagaccttggaacaacgtattcgtgtgttgctgtgtggcttgatga |
8647813 |
T |
|
| Q |
389 |
tcacaacagagtggagattatttacaatgaacaaggcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgct |
488 |
Q |
| |
|
||||| ||||| ||||||||| ||||||| ||||| |||| ||| |||||||||||||||||||| || || |||||||||||||||||| |||| ||| |
|
|
| T |
8647812 |
acacaatagagttgagattattcacaatgatcaaggaaacagaactacaccttcttttgttgctttcaccgatgatcaaaggttgattggtgatgccgct |
8647713 |
T |
|
| Q |
489 |
aagaatcaatctgccaccaactctgaaaacactgtctttggtaaatatctatt |
541 |
Q |
| |
|
|| ||||| |||| | ||| || ||||||||||||||||||| |||||| |
|
|
| T |
8647712 |
aaaaatcaggctgcttctaaccctaccaacactgtctttggtaaatttctatt |
8647660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 324 - 531
Target Start/End: Original strand, 13332076 - 13332283
Alignment:
| Q |
324 |
gaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaag |
423 |
Q |
| |
|
||||||||||| |||||||| || |||||||| || || |||||||||||||||||||| || | ||| | ||||| ||||||||| ||||||| |||| |
|
|
| T |
13332076 |
gaaggacgtgcagtgggaatcgaccttggaacaacctactcatgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaag |
13332175 |
T |
|
| Q |
424 |
gcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaacactgt |
523 |
Q |
| |
|
| || | ||| |||||||||||||||||||| | | |||||||| ||||||||| ||||||| ||||||||||||||||| ||| ||||||||||| | |
|
|
| T |
13332176 |
gaaatagaactacaccttcttttgttgctttcaacaatgatcaaagattgattggtgatgctgccaagaatcaatctgccactaaccctgaaaacactat |
13332275 |
T |
|
| Q |
524 |
ctttggta |
531 |
Q |
| |
|
|||||||| |
|
|
| T |
13332276 |
ctttggta |
13332283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 336 - 531
Target Start/End: Original strand, 10492939 - 10493134
Alignment:
| Q |
336 |
gtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaaggcaacaaaacaa |
435 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||||||| ||||| || | ||| | ||||| || |||||| ||||||| ||||| || | ||| | |
|
|
| T |
10492939 |
gtgggaatagatcttggaacaacctactcatgtgttgctgtatggcttgatgaacaccaaagagttgaaattattcacaatgatcaaggaaatagaacta |
10493038 |
T |
|
| Q |
436 |
caccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaacactgtctttggta |
531 |
Q |
| |
|
||||||||||||||||||| | | |||||||||||||| ||| ||||||||||||||||||||||||| ||| |||||||||| |||||||||| |
|
|
| T |
10493039 |
caccttcttttgttgctttcaacaatgatcaaaggttgatcggtgatgctgctaagaatcaatctgccactaaccctgaaaacaccgtctttggta |
10493134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 317 - 531
Target Start/End: Original strand, 27829264 - 27829478
Alignment:
| Q |
317 |
aaagtatgaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaat |
416 |
Q |
| |
|
|||||||||||| | | |||||||||| || || || || || || || || ||||| | ||||| ||| | ||||||||||||||||||||| ||||| |
|
|
| T |
27829264 |
aaagtatgaagggctttctgtgggaattgacctaggtacaacgtactcgtgcgttgcagcgtggcaggatcaacacaacagagtggagattattcacaat |
27829363 |
T |
|
| Q |
417 |
gaacaaggcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaa |
516 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||| || ||| | || |||||||||||| ||||||||||||| ||| |||| ||||| || ||| |
|
|
| T |
27829364 |
gaacaaggcaacaagacaacaccttcttgtgttgctttcacggacaaacagaggttgattggtgatgctgctaagaaccaagctgcttccaaccctcaaa |
27829463 |
T |
|
| Q |
517 |
acactgtctttggta |
531 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
27829464 |
acactatctttggta |
27829478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 327 - 531
Target Start/End: Complemental strand, 8630401 - 8630197
Alignment:
| Q |
327 |
ggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaaggca |
426 |
Q |
| |
|
|||| ||||||||||||||| |||||||| || ||||| ||||||| ||| ||| |||| | | |||||||| ||||||||| ||||||| |||||| |
|
|
| T |
8630401 |
ggacatgctgtgggaatagaccttggaacaacctattcttgtgttggtgtttggttggaagaaaagaacagagttgagattattcacaatgatgaaggca |
8630302 |
T |
|
| Q |
427 |
acaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaacactgtctt |
526 |
Q |
| |
|
| |||| |||||||| || ||||||||||| || |||||||||||| ||||| |||||||||| |||| |||||| |||| | ||||||||||||| |
|
|
| T |
8630301 |
ataaaatcacaccttccttcgttgcttttaccgatgatcaaaggttggttggtggtgctgctaaggatcaggctgccatcaacccacaaaacactgtctt |
8630202 |
T |
|
| Q |
527 |
tggta |
531 |
Q |
| |
|
||||| |
|
|
| T |
8630201 |
tggta |
8630197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 332 - 547
Target Start/End: Original strand, 8584470 - 8584685
Alignment:
| Q |
332 |
tgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaaggcaacaaa |
431 |
Q |
| |
|
||||||||||||||| |||||||| || ||||| ||||||| ||| ||| |||| | | |||||||| ||||||||| |||| || ||||||| ||| |
|
|
| T |
8584470 |
tgctgtgggaatagaccttggaacaacctattcttgtgttggtgtttggttggaagaaaagaacagagttgagattattcacaacgatgaaggcaataaa |
8584569 |
T |
|
| Q |
432 |
acaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaacactgtctttggta |
531 |
Q |
| |
|
| |||||||| |||||||||||||| || |||||||||||| ||||| |||||||||| |||| |||| | |||| | || |||||||||||||||| |
|
|
| T |
8584570 |
atcacaccttcctttgttgcttttaccgatgatcaaaggttggttggtggtgctgctaaggatcaggctgctatcaacccagagaacactgtctttggta |
8584669 |
T |
|
| Q |
532 |
aatatctatttctatt |
547 |
Q |
| |
|
|| ||||| |||||| |
|
|
| T |
8584670 |
tatttctatctctatt |
8584685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 339 - 532
Target Start/End: Complemental strand, 17269261 - 17269068
Alignment:
| Q |
339 |
ggaatagatcttggaactacttattcatgtgttgctgtgtggc-tggagaatcacaacagagtggagattatttacaatgaacaaggcaacaaaacaaca |
437 |
Q |
| |
|
|||||||| ||||| || || || ||||||||||||||||||| || |||| ||| ||||| |||||||| ||||||| |||||||||||||| || |
|
|
| T |
17269261 |
ggaatagaccttgggacgacatactcatgtgttgctgtgtggcatgaagaa-cacggtagagttgagattatacacaatgatcaaggcaacaaaactact |
17269163 |
T |
|
| Q |
438 |
ccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaacactgtctttggtaa |
532 |
Q |
| |
|
|| ||||||||||||||| || | ||| ||||||| || ||| || | |||||||||||| |||||| ||| | |||||||| ||||||||||| |
|
|
| T |
17269162 |
ccgtcttttgttgcttttgctaaagatgaaaggtttatcggtgattccgctaagaatcaagctgccatgaacccagaaaacaccgtctttggtaa |
17269068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 321 - 502
Target Start/End: Complemental strand, 8610843 - 8610662
Alignment:
| Q |
321 |
tatgaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaac |
420 |
Q |
| |
|
||||| |||| |||| | ||||| ||||||||||| || ||||||||||||||||| |||| ||| | ||||||||| ||||| || | ||||| | |
|
|
| T |
8610843 |
tatgagggacctgctattggaattgatcttggaacaacctattcatgtgttgctgtatggcaggaacaaaacaacagagctgagataatccataatgagc |
8610744 |
T |
|
| Q |
421 |
aaggcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgc |
502 |
Q |
| |
|
|||| |||| ||| || ||||||||||||||||| ||| |||||||||||||| ||| |||||||||| |||||| |||| |
|
|
| T |
8610743 |
aaggaaacagaaccactccttcttttgttgctttctctggtgatcaaaggttgataggtgatgctgctaaaaatcaagctgc |
8610662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 348 - 496
Target Start/End: Complemental strand, 8602886 - 8602738
Alignment:
| Q |
348 |
cttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaaggcaacaaaacaacaccttcttttg |
447 |
Q |
| |
|
|||||||| || ||||||||||| ||||| |||| ||| | ||||||| | ||||||||| ||||||| ||||| |||| ||| || |||||||||| |
|
|
| T |
8602886 |
cttggaacaacctattcatgtgtagctgtttggcaggaccaaaacaacagggcagagattattcacaatgatcaaggaaacagaactactccttcttttg |
8602787 |
T |
|
| Q |
448 |
ttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatca |
496 |
Q |
| |
|
||||||||||||| ||| |||||||||| ||| ||||||| || ||||| |
|
|
| T |
8602786 |
ttgcttttactgatgataaaaggttgatcggtgatgctgccaaaaatca |
8602738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 396 - 532
Target Start/End: Complemental strand, 17261496 - 17261360
Alignment:
| Q |
396 |
agagtggagattatttacaatgaacaaggcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatc |
495 |
Q |
| |
|
||||| ||||| ||| ||||||| ||||| ||||||| || |||||||||||||||||| || | ||| |||||||||| ||| |||| |||||||||| |
|
|
| T |
17261496 |
agagttgagatcattcacaatgatcaaggaaacaaaattactccttcttttgttgcttttgctaaagatgaaaggttgatcggtgatgccgctaagaatc |
17261397 |
T |
|
| Q |
496 |
aatctgccaccaactctgaaaacactgtctttggtaa |
532 |
Q |
| |
|
|| |||||| ||| | |||||||| ||||||||||| |
|
|
| T |
17261396 |
aagctgccataaacccagaaaacaccgtctttggtaa |
17261360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 402 - 487
Target Start/End: Complemental strand, 8591496 - 8591411
Alignment:
| Q |
402 |
gagattatttacaatgaacaaggcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgc |
487 |
Q |
| |
|
||||||||| ||||||| ||||| || | || |||||||||||||||||||||||| | |||||||||||||||||| ||||||| |
|
|
| T |
8591496 |
gagattattcacaatgatcaaggaaatagaattacaccttcttttgttgcttttactaatgatcaaaggttgattggtgatgctgc |
8591411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 412 - 502
Target Start/End: Complemental strand, 8582751 - 8582661
Alignment:
| Q |
412 |
acaatgaacaaggcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgc |
502 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| ||||||||||||| | |||||| ||||||||| ||||||| || |||||| |||| |
|
|
| T |
8582751 |
acaatgatcaaggaaacaaaacaacaccttcttgtgttgcttttactaattctcaaagattgattggtgatgctgccaaaaatcaagctgc |
8582661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 487
Target Start/End: Original strand, 8635513 - 8635588
Alignment:
| Q |
412 |
acaatgaacaaggcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgc |
487 |
Q |
| |
|
||||||| ||||| |||| || |||||||||| ||||||||| ||||||| ||||||||||||||| ||||||| |
|
|
| T |
8635513 |
acaatgagcaagggaacagaatcacaccttcttgtgttgctttcactgacgcacaaaggttgattggtgatgctgc |
8635588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 454
Target Start/End: Complemental strand, 8546776 - 8546721
Alignment:
| Q |
399 |
gtggagattatttacaatgaacaaggcaacaaaacaacaccttcttttgttgcttt |
454 |
Q |
| |
|
||||| || ||| ||||||| ||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
8546776 |
gtggaaatcattcacaatgatcaaggaaacaaaacaacaccttcttgtgttgcttt |
8546721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 496
Target Start/End: Original strand, 29581088 - 29581263
Alignment:
| Q |
321 |
tatgaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaac |
420 |
Q |
| |
|
|||||||||| |||| | ||||| || || || || || ||||||||||| || || |||| ||||||| |||| ||| ||||| || ||||||| | |
|
|
| T |
29581088 |
tatgaaggacctgctatcggaatcgacctcggcacaacctattcatgtgtagcagtttggcaggagaatatcaaccgagctgagatcatccacaatgatc |
29581187 |
T |
|
| Q |
421 |
aaggcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatca |
496 |
Q |
| |
|
||||||| ||| ||||||||| |||| ||||| |||||| | ||||||||| ||||||||||||| ||||| |
|
|
| T |
29581188 |
aaggcaatggaaccacaccttctgttgtagctttcactgactcactgaggttgattagtaatgctgctaaaaatca |
29581263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 496
Target Start/End: Complemental strand, 8104151 - 8104069
Alignment:
| Q |
414 |
aatgaacaaggcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatca |
496 |
Q |
| |
|
||||| ||||| |||| ||| ||||| |||| ||||||||| ||||| | |||||||||| ||| |||||||||||||||| |
|
|
| T |
8104151 |
aatgatcaagggaacagaacgacaccgtcttatgttgctttcactgatagtgaaaggttgatcggtgatgctgctaagaatca |
8104069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 496
Target Start/End: Original strand, 29577003 - 29577087
Alignment:
| Q |
412 |
acaatgaacaaggcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatca |
496 |
Q |
| |
|
||||||| |||||||| | ||| ||||||||| |||| ||||| ||||| | |||||| ||||||||||||||||| ||||| |
|
|
| T |
29577003 |
acaatgatcaaggcaatagaaccacaccttctgttgtagctttcactgattcactaaggttaattggtaatgctgctaaaaatca |
29577087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 6e-54; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 324 - 547
Target Start/End: Original strand, 9322990 - 9323213
Alignment:
| Q |
324 |
gaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaag |
423 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| || ||||| ||||||||||||||||| || | ||| | ||||| ||||||||| ||||||| |||| |
|
|
| T |
9322990 |
gaaggacgtgcagtgggtatagatcttggaacaacctattcttgtgttgctgtgtggcttgatcaacaccaaagagttgagattattcacaatgatcaag |
9323089 |
T |
|
| Q |
424 |
gcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaacactgt |
523 |
Q |
| |
|
| ||| |||||||||||||||||||||||| | | || ||||||||||||||| |||||||||||||||||||||| || ||| ||||||||||| | |
|
|
| T |
9323090 |
gaaaccgaacaacaccttcttttgttgctttcaacaatgagcaaaggttgattggtgatgctgctaagaatcaatctgctactaaccctgaaaacactat |
9323189 |
T |
|
| Q |
524 |
ctttggtaaatatctatttctatt |
547 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
9323190 |
ctttggtaaatttctatttctatt |
9323213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 324 - 547
Target Start/End: Original strand, 9377469 - 9377692
Alignment:
| Q |
324 |
gaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaag |
423 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| || ||||| ||||||||||||||||| || | ||| | ||||| ||||||||| ||||||| |||| |
|
|
| T |
9377469 |
gaaggacgtgcagtgggtatagatcttggaacaacctattcttgtgttgctgtgtggcttgatcaacaccaaagagttgagattattcacaatgatcaag |
9377568 |
T |
|
| Q |
424 |
gcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaacactgt |
523 |
Q |
| |
|
| ||| |||||||||||||||||||||||| | | || ||||||||||||||| |||||||||||||||||||||| || ||| ||||||||||| | |
|
|
| T |
9377569 |
gaaaccgaacaacaccttcttttgttgctttcaacaatgagcaaaggttgattggtgatgctgctaagaatcaatctgctactaaccctgaaaacactat |
9377668 |
T |
|
| Q |
524 |
ctttggtaaatatctatttctatt |
547 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
9377669 |
ctttggtaaatttctatttctatt |
9377692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 324 - 547
Target Start/End: Original strand, 9334962 - 9335184
Alignment:
| Q |
324 |
gaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaag |
423 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| || ||||| ||||||||||||||||| || | ||| | ||||| ||||||||| ||||||| |||| |
|
|
| T |
9334962 |
gaaggacgtgcagtgggtatagatcttggaacaacctattcttgtgttgctgtgtggcttgatcaacaccaaagagttgagattattcacaatgatcaag |
9335061 |
T |
|
| Q |
424 |
gcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaacactgt |
523 |
Q |
| |
|
| ||| |||||||||||||||||||||||| | | || |||||||||| |||| |||||||||||||||||||||| || ||| ||||||||||| | |
|
|
| T |
9335062 |
gaaaccgaacaacaccttcttttgttgctttcaacaatgagcaaaggttga-tggtgatgctgctaagaatcaatctgctactaaccctgaaaacactat |
9335160 |
T |
|
| Q |
524 |
ctttggtaaatatctatttctatt |
547 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
9335161 |
ctttggtaaatttctatttctatt |
9335184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 323 - 550
Target Start/End: Complemental strand, 30776294 - 30776067
Alignment:
| Q |
323 |
tgaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaa |
422 |
Q |
| |
|
|||||||| ||| ||||| ||||| |||||||| || || || ||||| ||||| ||||||||| | | |||||||| || ||||| |||| || || |
|
|
| T |
30776294 |
tgaaggacatgccgtggggatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaa |
30776195 |
T |
|
| Q |
423 |
ggcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaacactg |
522 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| ||||| | |||||||||| | ||| |||||||||| | || |||| | |||| || ||||||||| |
|
|
| T |
30776194 |
ggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggaccaggctgctatcaaccctcaaaacactg |
30776095 |
T |
|
| Q |
523 |
tctttggtaaatatctatttctattctc |
550 |
Q |
| |
|
|||||||||||| |||||| |||||||| |
|
|
| T |
30776094 |
tctttggtaaatttctattgctattctc |
30776067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 330 - 532
Target Start/End: Complemental strand, 35133624 - 35133422
Alignment:
| Q |
330 |
cgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaaggcaaca |
429 |
Q |
| |
|
|||||| | |||||||| || ||||| || |||||||||||||| || |||| || | ||| | |||| || || ||| |||| || ||| |||||| |
|
|
| T |
35133624 |
cgtgctatcggaatagacctcggaacaacgtattcatgtgttgcagtatggcaagaacaacactatcgagtcgaaatcattcacaacgatcaaagcaaca |
35133525 |
T |
|
| Q |
430 |
aaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaacactgtctttgg |
529 |
Q |
| |
|
||||||||||||||| | ||||||| ||| | |||||||||||||| ||| ||||||||||||||||| |||| |||| | |||||||||||| ||||| |
|
|
| T |
35133524 |
aaacaacaccttcttgtattgctttcactaaggatcaaaggttgatcggtgatgctgctaagaatcaagctgctgccaattttgaaaacactgtatttgg |
35133425 |
T |
|
| Q |
530 |
taa |
532 |
Q |
| |
|
||| |
|
|
| T |
35133424 |
taa |
35133422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 321 - 531
Target Start/End: Original strand, 42554110 - 42554320
Alignment:
| Q |
321 |
tatgaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaac |
420 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| || ||||| |||||| |||||||| || | || || ||||| ||||||||| ||||||| | |
|
|
| T |
42554110 |
tatgaaggacgtgcagtgggaatagaccttggaacaacgtattcgtgtgttactgtgtgggaagatgaacaaaatagagttgagattattcacaatgatc |
42554209 |
T |
|
| Q |
421 |
aaggcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaacac |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | || |||||||||||||| ||||||||||| ||||| | ||||||||| | ||||||| |
|
|
| T |
42554210 |
aaggcaacaaaacaacaccttcttttgttgcttttactcatcatgaaaggttgattggtgatgctgctaaggatcaaaccgccaccaacccccaaaacac |
42554309 |
T |
|
| Q |
521 |
tgtctttggta |
531 |
Q |
| |
|
||||||||||| |
|
|
| T |
42554310 |
tgtctttggta |
42554320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 325 - 541
Target Start/End: Complemental strand, 28221122 - 28220906
Alignment:
| Q |
325 |
aaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaagg |
424 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || |||||||||||||||||||||| || | ||||| || || ||||||||| ||||||| ||||| |
|
|
| T |
28221122 |
aaggatgtgctgtgggaatagatcttggaacaacgtattcatgtgttgctgtgtggcaagatgaacacaatagggttgagattattcacaatgatcaagg |
28221023 |
T |
|
| Q |
425 |
caacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaacactgtc |
524 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || || ||| ||||||||||||| |||||||||| |||||| | |||| |||| | |||| || ||| |
|
|
| T |
28221022 |
caacaaaacaactccttcttttgttgctttcaccgatgatgaaaggttgattggcgatgctgctaaaaatcaaacggccaacaacccccaaaataccgtc |
28220923 |
T |
|
| Q |
525 |
tttggtaaatatctatt |
541 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
28220922 |
tttggtaaatttctatt |
28220906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 322 - 497
Target Start/End: Original strand, 16656524 - 16656699
Alignment:
| Q |
322 |
atgaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaaca |
421 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||| || ||||||| || |
|
|
| T |
16656524 |
atgaaggacgtgcagtgggaatagaccttggaacaacttattcatgtgttgctgtgtggatggaccgtcacaacagagcagagatcatacacaatgacca |
16656623 |
T |
|
| Q |
422 |
aggcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaa |
497 |
Q |
| |
|
|| |||| |||||||||||||||||||||||| ||| | |||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
16656624 |
gggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgatcggtgatgctgctaagaatcaa |
16656699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 324 - 535
Target Start/End: Original strand, 12244329 - 12244540
Alignment:
| Q |
324 |
gaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaag |
423 |
Q |
| |
|
||||||||||| ||||||||||| ||||| || || |||||||||||||| || |||| ||| | ||| | || || || ||| |||| || || | |
|
|
| T |
12244329 |
gaaggacgtgccgtgggaatagaccttggtacaacgtattcatgtgttgcagtatggcaggaacaacactctcgtgttgaaatcattcacaacgatcagg |
12244428 |
T |
|
| Q |
424 |
gcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaacactgt |
523 |
Q |
| |
|
|||||| |||||||||||||| ||||||||| ||||| ||||||||||| |||||| |||||||||| |||||| |||| | |||||| |||||||||| |
|
|
| T |
12244429 |
gcaacagaacaacaccttcttgtgttgctttcactgaagatcaaaggtttattggtgatgctgctaaaaatcaagctgctgctaactctcaaaacactgt |
12244528 |
T |
|
| Q |
524 |
ctttggtaaata |
535 |
Q |
| |
|
|||||||||||| |
|
|
| T |
12244529 |
ctttggtaaata |
12244540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 335 - 534
Target Start/End: Complemental strand, 43626485 - 43626286
Alignment:
| Q |
335 |
tgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaaggcaacaaaaca |
434 |
Q |
| |
|
|||||||||||| |||||||| || ||||| ||| ||||||||||||| || | ||| ||||| |||||||| ||||||| ||||| |||| ||| |
|
|
| T |
43626485 |
tgtgggaatagaccttggaacaacgtattcttgtattgctgtgtggcttgatgaaaacagaagagtagagattatccacaatgaccaaggaaacagaact |
43626386 |
T |
|
| Q |
435 |
acaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaacactgtctttggtaaat |
534 |
Q |
| |
|
||||||||||||||| |||| ||| | || ||||||||||||||| ||||||||||| |||| || || || || | |||||||||||||||||||||| |
|
|
| T |
43626385 |
acaccttcttttgtttctttcactaaggaccaaaggttgattggtgatgctgctaagggtcaagctacctccgaccccgaaaacactgtctttggtaaat |
43626286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 402 - 531
Target Start/End: Original strand, 12257918 - 12258047
Alignment:
| Q |
402 |
gagattatttacaatgaacaaggcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctg |
501 |
Q |
| |
|
||||| ||| |||| || ||||| |||| |||||| ||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
12257918 |
gagatcattcacaacgatcaaggaaacagaacaacgccttcttgtgttgcttttactaaagatcaaaggttgattggtgatgctgctaagaatcaagctg |
12258017 |
T |
|
| Q |
502 |
ccaccaactctgaaaacactgtctttggta |
531 |
Q |
| |
|
| ||||| || || ||||||||||||||| |
|
|
| T |
12258018 |
ctgccaaccctcaacacactgtctttggta |
12258047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 324 - 532
Target Start/End: Complemental strand, 12235974 - 12235766
Alignment:
| Q |
324 |
gaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaag |
423 |
Q |
| |
|
||||||| ||||||||| ||||| ||||| || || |||||||||||||| || |||| ||| | ||| |||| ||||| ||| |||| || |||| |
|
|
| T |
12235974 |
gaaggacttgctgtggggatagaccttggtacaacatattcatgtgttgcagtatggcaggaacagcactctcgagttgagatcattcacaacgatcaag |
12235875 |
T |
|
| Q |
424 |
gcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaacactgt |
523 |
Q |
| |
|
|||| | |||||| ||||||||||||||||| || || |||| |||||||||||| ||||||||||||||||| |||| ||||| | ||||||| || |
|
|
| T |
12235874 |
gcaatagaacaaccccttcttttgttgctttcaccgaaaatcagaggttgattggtgatgctgctaagaatcaagctgcttccaacccgcaaaacaccgt |
12235775 |
T |
|
| Q |
524 |
ctttggtaa |
532 |
Q |
| |
|
||||||||| |
|
|
| T |
12235774 |
ctttggtaa |
12235766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 324 - 531
Target Start/End: Complemental strand, 14705639 - 14705432
Alignment:
| Q |
324 |
gaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaag |
423 |
Q |
| |
|
|||||| |||||||||||||||| ||||| || || || ||||||||||| || |||| ||| | || | |||| || || ||| |||| || |||| |
|
|
| T |
14705639 |
gaaggatgtgctgtgggaatagaccttggtacaacgtactcatgtgttgcagtatggcaggaacaacattatcgagttgaaatcattcacaacgatcaag |
14705540 |
T |
|
| Q |
424 |
gcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaacactgt |
523 |
Q |
| |
|
|||| | |||||| ||||||||||||||||| || || |||| ||||||||||| ||||||||||||||||| |||| ||||| || ||||||||| |
|
|
| T |
14705539 |
gcaatagaacaactccttcttttgttgctttcaccgaaaatcagcggttgattggtgatgctgctaagaatcaagctgctgccaaccctcgaaacactgt |
14705440 |
T |
|
| Q |
524 |
ctttggta |
531 |
Q |
| |
|
|||||||| |
|
|
| T |
14705439 |
ctttggta |
14705432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 335 - 541
Target Start/End: Original strand, 16661003 - 16661209
Alignment:
| Q |
335 |
tgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaaggcaacaaaaca |
434 |
Q |
| |
|
|||||| ||||| || ||||| || || |||||||||||||| ||| |||| | | |||||||| |||||||| |||| || |||||||||||| |
|
|
| T |
16661003 |
tgtgggcatagacctaggaacaacatactcatgtgttgctgtttggttggaagagaaaaacagagttgagattatccacaacgatgaaggcaacaaaatt |
16661102 |
T |
|
| Q |
435 |
acaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaacactgtctttggtaaat |
534 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||| | ||| |||||||||| ||||| |||| | |||| | ||||||| ||||||| || || |
|
|
| T |
16661103 |
acaccttcttttgttgcttttactgatgctcaaaggttggtcggtggtgctgctaaggatcaagctgctatcaacccacaaaacaccgtctttgctatat |
16661202 |
T |
|
| Q |
535 |
atctatt |
541 |
Q |
| |
|
|||||| |
|
|
| T |
16661203 |
ttctatt |
16661209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 420 - 532
Target Start/End: Complemental strand, 7543357 - 7543245
Alignment:
| Q |
420 |
caaggcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaaca |
519 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| || || |||| |||||||| ||| || ||||||||||||| |||| ||||| || |||||| |
|
|
| T |
7543357 |
caaggcaacagaacaacaccttcttttgttgctttcaccgaaaatcagaggttgatcggtgataatgctaagaatcaagctgcttccaaccctcaaaaca |
7543258 |
T |
|
| Q |
520 |
ctgtctttggtaa |
532 |
Q |
| |
|
||||||||||||| |
|
|
| T |
7543257 |
ctgtctttggtaa |
7543245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 420 - 532
Target Start/End: Complemental strand, 12000413 - 12000301
Alignment:
| Q |
420 |
caaggcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaaca |
519 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||| ||||| |||||||||| ||||| |||||||||| || ||| | || |||||||| |||||| |
|
|
| T |
12000413 |
caaggcaacaaaataacaccttcttgtgttgctttcactgaaaatcaaaggtttgttggtgatgctgctaaaaaccaagccgctgccaactctcaaaaca |
12000314 |
T |
|
| Q |
520 |
ctgtctttggtaa |
532 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
12000313 |
ctgtttttggtaa |
12000301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 336 - 531
Target Start/End: Complemental strand, 43745985 - 43745793
Alignment:
| Q |
336 |
gtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaaggcaacaaaacaa |
435 |
Q |
| |
|
||||||||||| |||||||| || ||||| |||||||||||||||| || | || || ||||| ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
43745985 |
gtgggaatagaccttggaacaacgtattcgtgtgttgctgtgtggcaagatgaacaaaatagagttgagattattcacaatgatcaaggcaacaaaacaa |
43745886 |
T |
|
| Q |
436 |
caccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaacactgtctttggta |
531 |
Q |
| |
|
| ||||||||||||||||||||| || |||||||||| ||| | ||||||||||||||| | ||||||||| || ||||||| ||||||||| |
|
|
| T |
43745885 |
c---ttcttttgttgcttttactgatcatgaaaggttgataggtgacgctgctaagaatcaaaccgccaccaaccctcaaaacaccatctttggta |
43745793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 399 - 497
Target Start/End: Complemental strand, 12529969 - 12529871
Alignment:
| Q |
399 |
gtggagattatttacaatgaacaaggcaacaaaacaacaccttcttttgttgcttttactgacgatcaaaggttgattggtaatgctgctaagaatcaa |
497 |
Q |
| |
|
||||| || ||| ||||||| ||||| ||||||||||||||||||| ||||||||||||| | ||| || ||||||||| ||||||| || |||||| |
|
|
| T |
12529969 |
gtggaaataattcacaatgatcaaggaaacaaaacaacaccttcttgtgttgcttttactaattctcagagattgattggtcatgctgccaaaaatcaa |
12529871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 462 - 542
Target Start/End: Complemental strand, 28911352 - 28911272
Alignment:
| Q |
462 |
gatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaacactgtctttggtaaatatctattt |
542 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||| | ||||||||||| || |||| || ||||||| |
|
|
| T |
28911352 |
gatcaaaggttgattggtgatgctgctaagaatcaggctgccaccaaccccgaaaacactgttttaggtatatttctattt |
28911272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University