View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8417_low_6 (Length: 467)
Name: NF8417_low_6
Description: NF8417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8417_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 22302940 - 22303003
Alignment:
| Q |
234 |
tgatcagtgcatttt-aatgtactttcttctatcttatgctatgttagttctatgatttctccc |
296 |
Q |
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| T |
22302940 |
tgatcagtgcatttttaatgtactttcttctatcttatgctatgacaattctatgatttctccc |
22303003 |
T |
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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 429
Target Start/End: Original strand, 22303081 - 22303120
Alignment:
| Q |
390 |
tgacacctttcatcgtgcagggcataactggagctgcgtt |
429 |
Q |
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| T |
22303081 |
tgacacctttcattgcgcagggcataactggagctgcgtt |
22303120 |
T |
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Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 30742763 - 30742700
Alignment:
| Q |
234 |
tgatcagtgcatttt-aatgtactttcttctatcttatgctatgttagttctatgatttctccc |
296 |
Q |
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| T |
30742763 |
tgatcagtgcatttttaatgtactttcttctatcttatgctatggaaattctatgatttctccc |
30742700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 22806387 - 22806324
Alignment:
| Q |
234 |
tgatcagtgcatttt-aatgtactttcttctatcttatgctatgttagttctatgatttctccc |
296 |
Q |
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| T |
22806387 |
tgatcagtgcatttttaatgtactttcttctatcttatgctatggcaattctatgatttctccc |
22806324 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 24030701 - 24030764
Alignment:
| Q |
234 |
tgatcagtgcatttt-aatgtactttcttctatcttatgctatgttagttctatgatttctccc |
296 |
Q |
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| T |
24030701 |
tgatcagtgcatttttaatgtactttcttctatcttatgctatggaaattctatgatttgtccc |
24030764 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 19800154 - 19800217
Alignment:
| Q |
234 |
tgatcagtgcatttt-aatgtactttcttctatcttatgctatgttagttctatgatttctccc |
296 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||||| | |||||||||||||||| |
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| T |
19800154 |
tgatcagtgcatttttaatgtactttcttccatcttatgctatggcaattctatgatttctccc |
19800217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 374 - 425
Target Start/End: Original strand, 30142087 - 30142138
Alignment:
| Q |
374 |
tgaataaacagtagtttgacacctttcatcgtgcagggcataactggagctg |
425 |
Q |
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| T |
30142087 |
tgaataaacagtaatttgacatctttcattgtgcagggcataactggagctg |
30142138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 30141946 - 30142009
Alignment:
| Q |
234 |
tgatcagtgcatttt-aatgtactttcttctatcttatgctatgttagttctatgatttctccc |
296 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||| | ||| |||||||||||| |
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| T |
30141946 |
tgatcagtgcatttttaatgtactttcttctatcttatgttatgacaattcaatgatttctccc |
30142009 |
T |
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