View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8417_low_7 (Length: 417)

Name: NF8417_low_7
Description: NF8417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8417_low_7
NF8417_low_7
[»] chr8 (13 HSPs)
chr8 (19-417)||(40719691-40720092)
chr8 (102-287)||(30208195-30208379)
chr8 (106-230)||(42056680-42056803)
chr8 (102-230)||(35179156-35179285)
chr8 (106-230)||(5594784-5594908)
chr8 (106-286)||(31333091-31333270)
chr8 (106-287)||(39401955-39402136)
chr8 (107-230)||(1162100-1162222)
chr8 (124-220)||(42921385-42921481)
chr8 (101-222)||(30362009-30362131)
chr8 (102-287)||(36132672-36132854)
chr8 (243-287)||(1162045-1162089)
chr8 (246-286)||(5594922-5594962)
[»] chr1 (18 HSPs)
chr1 (102-287)||(24241474-24241658)
chr1 (103-287)||(16253026-16253210)
chr1 (103-287)||(41942778-41942960)
chr1 (102-222)||(21356790-21356910)
chr1 (101-228)||(39744154-39744281)
chr1 (102-220)||(34773413-34773532)
chr1 (102-223)||(2344965-2345087)
chr1 (107-204)||(38746028-38746126)
chr1 (103-287)||(8971424-8971609)
chr1 (102-184)||(48503918-48504000)
chr1 (101-204)||(7101363-7101469)
chr1 (106-221)||(41725488-41725607)
chr1 (185-287)||(48506759-48506859)
chr1 (105-201)||(29189704-29189799)
chr1 (245-287)||(34773347-34773389)
chr1 (246-287)||(38745959-38746000)
chr1 (243-287)||(21356926-21356970)
chr1 (113-230)||(23238411-23238529)
[»] chr2 (18 HSPs)
chr2 (102-288)||(3870020-3870209)
chr2 (102-289)||(38879513-38879699)
chr2 (102-222)||(11028775-11028896)
chr2 (98-287)||(37721441-37721629)
chr2 (106-287)||(36400857-36401036)
chr2 (102-223)||(3647414-3647536)
chr2 (102-213)||(28734070-28734181)
chr2 (100-230)||(6512062-6512197)
chr2 (102-230)||(29685446-29685582)
chr2 (187-289)||(34480053-34480154)
chr2 (102-220)||(30706142-30706263)
chr2 (139-219)||(3949311-3949391)
chr2 (243-284)||(28733717-28733758)
chr2 (243-287)||(9009119-9009163)
chr2 (243-287)||(30706078-30706122)
chr2 (243-274)||(29685538-29685569)
chr2 (251-284)||(6512016-6512049)
chr2 (243-287)||(4848117-4848161)
[»] chr5 (23 HSPs)
chr5 (102-230)||(33758790-33758918)
chr5 (100-220)||(34849436-34849557)
chr5 (125-201)||(23151442-23151518)
chr5 (102-220)||(2976439-2976555)
chr5 (102-287)||(10719742-10719927)
chr5 (101-287)||(20524531-20524716)
chr5 (126-218)||(37872196-37872291)
chr5 (103-219)||(30319804-30319921)
chr5 (155-222)||(42285218-42285286)
chr5 (100-220)||(3454242-3454365)
chr5 (102-211)||(8026463-8026577)
chr5 (102-219)||(16778131-16778252)
chr5 (246-288)||(20654460-20654502)
chr5 (244-286)||(21239003-21239045)
chr5 (245-287)||(36442660-36442702)
chr5 (102-159)||(2467001-2467058)
chr5 (106-143)||(37872302-37872339)
chr5 (106-151)||(21239430-21239475)
chr5 (101-182)||(36442079-36442160)
chr5 (243-287)||(3454387-3454431)
chr5 (243-287)||(16778273-16778317)
chr5 (243-287)||(23145929-23145973)
chr5 (243-287)||(37872129-37872173)
[»] chr7 (10 HSPs)
chr7 (102-287)||(34998524-34998709)
chr7 (101-230)||(8541426-8541556)
chr7 (103-192)||(39187979-39188068)
chr7 (102-230)||(10544987-10545118)
chr7 (105-287)||(30783412-30783589)
chr7 (103-287)||(45627340-45627527)
chr7 (154-222)||(40076684-40076753)
chr7 (117-287)||(46023139-46023309)
chr7 (111-192)||(32676800-32676881)
chr7 (243-287)||(32677080-32677124)
[»] chr3 (16 HSPs)
chr3 (100-220)||(22220204-22220325)
chr3 (105-222)||(44880253-44880370)
chr3 (102-287)||(2008395-2008580)
chr3 (106-230)||(22831157-22831281)
chr3 (100-226)||(39056862-39056987)
chr3 (106-213)||(1994850-1994957)
chr3 (97-230)||(26466312-26466447)
chr3 (126-229)||(28297695-28297798)
chr3 (101-287)||(45805455-45805645)
chr3 (103-230)||(47169243-47169378)
chr3 (243-287)||(25199079-25199123)
chr3 (125-230)||(14784945-14785052)
chr3 (243-287)||(1994781-1994825)
chr3 (244-287)||(22220346-22220389)
chr3 (243-288)||(34060958-34061003)
chr3 (246-286)||(22831103-22831143)
[»] chr4 (14 HSPs)
chr4 (106-287)||(46550632-46550813)
chr4 (106-287)||(47541737-47541918)
chr4 (105-230)||(17056614-17056739)
chr4 (102-219)||(41464796-41464915)
chr4 (103-230)||(52920071-52920200)
chr4 (100-220)||(20679834-20679957)
chr4 (123-224)||(47833512-47833614)
chr4 (105-230)||(39503487-39503616)
chr4 (111-228)||(15827109-15827229)
chr4 (141-230)||(42969971-42970060)
chr4 (114-180)||(36364897-36364963)
chr4 (118-203)||(46381481-46381568)
chr4 (245-289)||(47732466-47732510)
chr4 (187-222)||(47732409-47732444)
[»] chr6 (6 HSPs)
chr6 (102-287)||(7080149-7080334)
chr6 (106-284)||(2141175-2141348)
chr6 (102-220)||(25336907-25337027)
chr6 (102-222)||(17852709-17852829)
chr6 (243-287)||(994884-994928)
chr6 (243-291)||(26606227-26606275)
[»] scaffold0095 (1 HSPs)
scaffold0095 (106-287)||(35366-35547)
[»] scaffold0288 (2 HSPs)
scaffold0288 (100-220)||(18047-18169)
scaffold0288 (243-287)||(17977-18022)
[»] scaffold0009 (2 HSPs)
scaffold0009 (102-191)||(25684-25773)
scaffold0009 (244-288)||(25974-26018)
[»] scaffold1339 (1 HSPs)
scaffold1339 (101-213)||(57-170)
[»] scaffold0830 (1 HSPs)
scaffold0830 (131-213)||(5379-5462)


Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 417
Target Start/End: Complemental strand, 40720092 - 40719691
Alignment:
Q  19 actagaccagcaagaaacgtacaaggctgagaaccatagcatgtgataccatgctaaccaataagaaataggagaatggacatgaggtattcttccatgg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40720092 actagaccagcaagaaacgtacaaggctgagaaccatagcatgtgataccatgctaaccaataagaaataggagaatggacatgaggtattcttccatgg 40719993  T
Q  119 tcaaaagaccaaatcaataatgtttggacaca--cacataaaaagattctcctcaaaatattcaatcatc-ttttttatcaatttcctccttattattta 215  Q
    ||||||||  |||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40719992 tcaaaagattaaattaataatgtttggacacacacacataaaaagattctcctcaaaatattcaatcatctttttttatcaatttcctccttattattta 40719893  T
Q  216 aaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttctccacatgaattgaatttgcatggaccatc 315  Q
    |||||||||||||||            ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  40719892 aaaaatacttctttatgtgtgtatgtgaccaaacactttttctttggtcatgcgaccatattagaatttctccacgtgaattgaatttgcatggaccatc 40719793  T
Q  316 agttgacgacactcaatgttagtcagtcgaaccactaattaaacagtaaaactttaataaaattttctagtatgtaaagagaaatgatatttgtaaaacc 415  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  40719792 aattgacgacactcaatgttagtcagtcgaaccactaattaaacagtaaaactataataaaattttctagtatgtaaagagaaatgatatttgtacaacc 40719693  T
Q  416 at 417  Q
    ||    
T  40719692 at 40719691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 102 - 287
Target Start/End: Original strand, 30208195 - 30208379
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacaca--cataaaaagattctcctcaaaatattcaatcatcttttttatcaatt 199  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |  ||||||||||||||||||||| |||||||||||||||||||||||||    
T  30208195 gaggtattcttccatggtcataagaccaaatcaataatgtttggacacatatacataaaaagattctcctcaaa-tattcaatcatcttttttatcaatt 30208293  T
Q  200 tcctccttattatttaaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    |||||||||||||| |||||| |||||||||            |||||||||||||||||||||| ||||||||||||||||||||||    
T  30208294 tcctccttattattaaaaaaacacttcttta--tgtgtgtgtgaccaaacactttttctttggtcctgtgaccatattagaatttctc 30208379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 106 - 230
Target Start/End: Original strand, 42056680 - 42056803
Alignment:
Q  106 tattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctcc 205  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| ||||    
T  42056680 tattcttccatggtcacaagaccaaatcaataatgtttggacacaaacataaaaagattctctttaaaatattcaatcatcttttttatcaattttctcc 42056779  T
Q  206 ttattatttaaaaaatacttcttta 230  Q
    |||||| |||||||||| |||||||    
T  42056780 ttatta-ttaaaaaatatttcttta 42056803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 102 - 230
Target Start/End: Original strand, 35179156 - 35179285
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatca-tcttttttatcaattt 200  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| | | ||||||||||||||    
T  35179156 gaggtattctttcatggtcataagaccaaatcaataatgtttggacacacatataaaaagattcttctcaaaatattcaataatttttttttatcaattt 35179255  T
Q  201 cctccttattatttaaaaaatacttcttta 230  Q
    ||| ||||||||| ||||||||||||||||    
T  35179256 ccttcttattattaaaaaaatacttcttta 35179285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 106 - 230
Target Start/End: Original strand, 5594784 - 5594908
Alignment:
Q  106 tattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctcc 205  Q
    ||||||||  |||||| ||||| ||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  5594784 tattcttctctggtcacaagactaaatcaataatatttggacacacacatataaagattcttctcaaaatattcaatcatcttttttatcactttcctcc 5594883  T
Q  206 ttattatttaaaaaatacttcttta 230  Q
    |||||||| ||||||||||||||||    
T  5594884 ttattattaaaaaaatacttcttta 5594908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 106 - 286
Target Start/End: Complemental strand, 31333270 - 31333091
Alignment:
Q  106 tattcttccatggtcaaaagaccaaatcaataatgtttgg--acacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcct 203  Q
    ||||||||||| |||| ||||||||||||| |||||||||  ||||||||||||||||||| | || |||||||||||||||||||||||||| ||| ||    
T  31333270 tattcttccatagtcacaagaccaaatcaa-aatgtttggttacacacacataaaaagattttacttaaaatattcaatcatcttttttatcagttttct 31333172  T
Q  204 ccttattatttaaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttct 286  Q
    |||||||||| |||||||| |||||||            |||||||||| |||||||| ||||||||||||||||||||||||    
T  31333171 ccttattattaaaaaaatatttcttta--tgtgtgtgtgaccaaacactatttctttgatcatgtgaccatattagaatttct 31333091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 106 - 287
Target Start/End: Complemental strand, 39402136 - 39401955
Alignment:
Q  106 tattcttccatggtcaaaagaccaaatcaataatgtttggacacaca--cataaaaagattctcctcaaaatattcaatcatctt-ttttatcaatttcc 202  Q
    |||||||||||||||| ||||||||||||||||| |||| ||| |||  |||||||||||||||||||||||||||||||||||| |||||||||||||     
T  39402136 tattcttccatggtcacaagaccaaatcaataatatttgaacatacatacataaaaagattctcctcaaaatattcaatcatctttttttatcaatttct 39402037  T
Q  203 tccttattatttaaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    | ||||||||| |||||||| || |||             ||||||||||||||||||| ||||||||| |||||| ||||||||    
T  39402036 ttcttattattaaaaaaatattttttt---tatgcgtgtgaccaaacactttttctttgatcatgtgacgatattaaaatttctc 39401955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 107 - 230
Target Start/End: Complemental strand, 1162222 - 1162100
Alignment:
Q  107 attcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctcct 206  Q
    |||| |||||| ||| |||||||||||| |||| |||| |||||||||||||| ||||||||||||||||||||||  ||||| |||||||||||||| |    
T  1162222 attcgtccatgatcacaagaccaaatcagtaatatttgaacacacacataaaaggattctcctcaaaatattcaat-gtctttcttatcaatttcctctt 1162124  T
Q  207 tattatttaaaaaatacttcttta 230  Q
    ||||||| |||||||| |||||||    
T  1162123 tattattaaaaaaatatttcttta 1162100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 42921385 - 42921481
Alignment:
Q  124 agaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctccttattatttaaaaaa 220  Q
    ||||||||| ||||||||||| ||||| | ||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| ||||||    
T  42921385 agaccaaattaataatgtttgaacacaaatataaaaagattcttctcaaaataatcaatcatcttttttatcaatttcatccttattattaaaaaaa 42921481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 101 - 222
Target Start/End: Complemental strand, 30362131 - 30362009
Alignment:
Q  101 tgaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatca-tcttttttatcaatt 199  Q
    |||||||||||||||||| || ||||| |||  ||   ||||||| || ||||||||||| ||||||||||||||||||||| | | |||||||||||||    
T  30362131 tgaggtattcttccatggccacaagactaaaaaaaatgtgtttggtcatacacataaaaaaattctcctcaaaatattcaattattattttttatcaatt 30362032  T
Q  200 tcctccttattatttaaaaaata 222  Q
    || ||||||||||| ||||||||    
T  30362031 tcgtccttattattaaaaaaata 30362009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 287
Target Start/End: Original strand, 36132672 - 36132854
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttc 201  Q
    |||||||||||| || |||| ||||| |||| |||| | |||||| ||||||||||||||||  |  | |||||||| |||||| |||||||| ||||||    
T  36132672 gaggtattcttctatagtcacaagactaaattaatagtatttggatacacacataaaaagatggtttttaaaatatttaatcattttttttattaatttc 36132771  T
Q  202 ctccttattatttaaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    || ||||||||| |||||||| |||||||            |||||||||||||| ||||| ||| ||||||||||||||||||||    
T  36132772 ct-cttattattaaaaaaatatttcttta--tgtgtgtataaccaaacactttttatttggccatatgaccatattagaatttctc 36132854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 1162089 - 1162045
Alignment:
Q  243 accaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    |||||||||||||||||| ||| | ||||||||| ||||||||||    
T  1162089 accaaacactttttctttagtcctatgaccatataagaatttctc 1162045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 5594922 - 5594962
Alignment:
Q  246 aaacactttttctttggtcatgtgaccatattagaatttct 286  Q
    |||||||||||||||| || ||||||||||||| |||||||    
T  5594922 aaacactttttctttgatcctgtgaccatattaaaatttct 5594962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 102 - 287
Target Start/End: Original strand, 24241474 - 24241658
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttc 201  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24241474 gaggtattcttccatggtcacatgaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttc 24241573  T
Q  202 ctccttattatt-taaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    ||||||||||||  ||||||||||| ||||            |||||| ||||||||||||||| ||||||||||||||||||||||    
T  24241574 ctccttattattaaaaaaaatactttttta--tgtgtgtgtgaccaaatactttttctttggtcctgtgaccatattagaatttctc 24241658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 103 - 287
Target Start/End: Original strand, 16253026 - 16253210
Alignment:
Q  103 aggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcc 202  Q
    ||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16253026 aggtattcttccatgttcacaagaccaaatcaataatgtttggagacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcc 16253125  T
Q  203 tccttattatttaaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    ||||||||||| |||||||| || |||             ||||||||||||||||||| |||||||| ||||||||||||||||    
T  16253126 tccttattattaaaaaaatatttttttttatgtgtgtgtgaccaaacactttttctttgatcatgtgatcatattagaatttctc 16253210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 103 - 287
Target Start/End: Original strand, 41942778 - 41942960
Alignment:
Q  103 aggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcc 202  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||| |||||||||||||||    
T  41942778 aggtattctttcatggtcacaagaccaaatcaataatgtttggacacatacataaaaagattctcttcgaaatattcaatcatcatttttatcaatttcc 41942877  T
Q  203 tccttattatttaaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    ||||||||||| ||||||||||||||||            |||||||||||| ||||||||| ||||||||||||||||||||||    
T  41942878 tccttattattaaaaaaatacttcttta--tgtgtgtatgaccaaacactttatctttggtcgtgtgaccatattagaatttctc 41942960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 102 - 222
Target Start/End: Original strand, 21356790 - 21356910
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttc 201  Q
    |||||||||||  ||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||     
T  21356790 gaggtattcttttatggtcacaagaccaaatcaataatgtttggacacacatataaaaagattctcttcaaaatattcaatcatcttttttatcaatttt 21356889  T
Q  202 ctccttattatttaaaaaata 222  Q
    ||| |||||||| ||||||||    
T  21356890 ctcattattattaaaaaaata 21356910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 101 - 228
Target Start/End: Complemental strand, 39744281 - 39744154
Alignment:
Q  101 tgaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaattt 200  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||||| |||||||||| |||    
T  39744281 tgaggtattcttctatggtcacaagaccaaatcaataatgtttggacacacatataaaaagattcttctcagaatagtcaatcattttttttatcatttt 39744182  T
Q  201 cctccttattatttaaaaaatacttctt 228  Q
    ||||||||||||| ||||| ||||||||    
T  39744181 cctccttattattaaaaaagtacttctt 39744154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 102 - 220
Target Start/End: Complemental strand, 34773532 - 34773413
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggaca--cacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatt 199  Q
    |||||||||||||||| ||| |||||||| ||||||||||||| |||  ||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  34773532 gaggtattcttccatgatcacaagaccaactcaataatgtttgcacatacacacataaaaagattctcctcaaaatattcaatcatattttttattaatt 34773433  T
Q  200 tcctccttattatttaaaaaa 220  Q
    ||||  |||||||| ||||||    
T  34773432 tcct-tttattattaaaaaaa 34773413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 102 - 223
Target Start/End: Original strand, 2344965 - 2345087
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggaca--cacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatt 199  Q
    ||||||||||||| |||||| |||||||||||||||||||||||| |  |||||||||||| ||| || | |||| ||||||||||||||||||||||||    
T  2344965 gaggtattcttccttggtcacaagaccaaatcaataatgtttggataagcacacataaaaa-attttctttaaaaaattcaatcatcttttttatcaatt 2345063  T
Q  200 tcctccttattatttaaaaaatac 223  Q
    |||||||| ||||| |||||||||    
T  2345064 tcctccttcttattaaaaaaatac 2345087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 107 - 204
Target Start/End: Complemental strand, 38746126 - 38746028
Alignment:
Q  107 attcttccatggtcaaaagaccaaatcaataatgtttggacacacac--ataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctc 204  Q
    |||||||||| |||| ||||||||||||||||| |||||||||||||  ||||| |||||||||||||||||||||||||||||| || |||||||||||    
T  38746126 attcttccatcgtcacaagaccaaatcaataat-tttggacacacacccataaatagattctcctcaaaatattcaatcatctttgttttcaatttcctc 38746028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 103 - 287
Target Start/End: Original strand, 8971424 - 8971609
Alignment:
Q  103 aggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacata--aaaagattctcctcaaaatattcaatca-tcttttttatcaatt 199  Q
    |||||||||| |||||||| | |||||||  || | | ||||| ||||||||||  |||| ||||||||||||||||| ||||| | ||||||||||| |    
T  8971424 aggtattctttcatggtcacacgaccaaagaaaaagtatttggtcacacacatataaaaatattctcctcaaaatatttaatcaattttttttatcaagt 8971523  T
Q  200 tcctccttattatttaaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    |||||||||||||| ||||||||||| ||||            ||| |||||||||| ||||||| ||||||||||||||||||||||    
T  8971524 tcctccttattattaaaaaaatacttattta--tgtatgtatgaccgaacactttttttttggtcctgtgaccatattagaatttctc 8971609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 48503918 - 48504000
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatca 184  Q
    |||||||||||||||| ||| ||||||||||||||||| |||||||||||| |||||| ||||||| |||||||| |||||||    
T  48503918 gaggtattcttccatgttcataagaccaaatcaataatatttggacacacatataaaaggattctcatcaaaatactcaatca 48504000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 204
Target Start/End: Complemental strand, 7101469 - 7101363
Alignment:
Q  101 tgaggtattcttccatggtcaaaagaccaaatcaataatgtttg----gacacacacataaaaagattctcctcaaaatattcaatcatcttttttatca 196  Q
    ||||||||||| ||||| ||| ||||||||||||||| |||| |     ||||||||||||||||||  |||| ||||||||||||||| | ||||||||    
T  7101469 tgaggtattctcccatgatcataagaccaaatcaatagtgttggaacatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatca 7101371  T
Q  197 atttcctc 204  Q
    ||||||||    
T  7101370 atttcctc 7101363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 221
Target Start/End: Original strand, 41725488 - 41725607
Alignment:
Q  106 tattcttccatggtcaaaagaccaaatcaataatgtttggacacac--acataaaaagattctcctcaaaatattcaat--catcttttttatcaatttc 201  Q
    |||||||| ||||||| |||||||||| |||| | |||||||||||  |||||| |||||| ||||||| |||||| ||   || |||||||||||||||    
T  41725488 tattcttctatggtcacaagaccaaataaatagtatttggacacacaaacataagaagattgtcctcaagatattccattatattttttttatcaatttc 41725587  T
Q  202 ctccttattatttaaaaaat 221  Q
     |  |||||||| |||||||    
T  41725588 ttttttattattaaaaaaat 41725607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 287
Target Start/End: Original strand, 48506759 - 48506859
Alignment:
Q  185 tcttttttatcaatttcctccttattatttaaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaattt 284  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||            | |||||||| ||||||| |||| ||||||||||||||||||    
T  48506759 tcttttttatcattttcctccttattattaaaaaaatacttctttatatgtgtgtg--atcaaacactatttctttagtcaggtgaccatattagaattt 48506856  T
Q  285 ctc 287  Q
    |||    
T  48506857 ctc 48506859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 201
Target Start/End: Complemental strand, 29189799 - 29189704
Alignment:
Q  105 gtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttc 201  Q
    ||||||||| ||| ||| ||||| |||| |||| ||||||||||||| |||||| | ||| ||||||| | ||||||||||  ||||||||||||||    
T  29189799 gtattcttctatgatcacaagactaaataaatagtgtttggacacacgcataaagaaattgtcctcaagacattcaatcat-atttttatcaatttc 29189704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 287
Target Start/End: Complemental strand, 34773389 - 34773347
Alignment:
Q  245 caaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    |||||||||||||||||||| ||| ||||||||||||||||||    
T  34773389 caaacactttttctttggtcctgtaaccatattagaatttctc 34773347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 38746000 - 38745959
Alignment:
Q  246 aaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    ||||||||||||||||| | ||||||||||||| ||||||||    
T  38746000 aaacactttttctttggccgtgtgaccatattaaaatttctc 38745959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 21356926 - 21356970
Alignment:
Q  243 accaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    |||||||||| |||||||||||  ||| |||||||||||||||||    
T  21356926 accaaacactatttctttggtctcgtggccatattagaatttctc 21356970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 230
Target Start/End: Complemental strand, 23238529 - 23238411
Alignment:
Q  113 ccatggtcaaaagaccaaatcaataatgtttggacaca--cacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctccttatt 210  Q
    ||||||||| |||||||||| |||| | ||||||||||  ||| |||| | ||| || |||||||||| ||| || |||||||||||||| ||  | ||     
T  23238529 ccatggtcacaagaccaaataaatagtctttggacacactcacgtaaatatattatcttcaaaatatttaattat-ttttttatcaattttcttttcatc 23238431  T
Q  211 atttaaaaaatacttcttta 230  Q
    ||| ||||||||||| ||||    
T  23238430 attaaaaaaatacttgttta 23238411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 6e-53; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 102 - 288
Target Start/End: Original strand, 3870020 - 3870209
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacaca----taaaaagattctcctcaaaatattcaatcatcttttttatcaa 197  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||    |||||||||||||||||||||||||||||||||||||||||||    
T  3870020 gaggtattcttccatggtcacaagaccaaatcaataatgttttgacacacacagacataaaaagattctcctcaaaatattcaatcatcttttttatcaa 3870119  T
Q  198 tttcctccttattatt---taaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttctcc 288  Q
    ||||||||||||||||    ||||||||||||||||            |||||||||||||||||||||| |||||||||||||||||||||||    
T  3870120 tttcctccttattattaaaaaaaaaatacttcttta----tgtgtgtgaccaaacactttttctttggtcctgtgaccatattagaatttctcc 3870209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 102 - 289
Target Start/End: Original strand, 38879513 - 38879699
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatc-ttttttatcaattt 200  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  38879513 gaggtattcttccatagtcacaagaccaaattaataatgtttggacacacacataaaaagattctcctcaaaatattaaatcatctttttttatcaattt 38879612  T
Q  201 cctccttattatttaaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtc--atgtgaccatattagaatttctcca 289  Q
     ||||| |||||| ||||||||||||||||            |||||||| |||||||||||||  |||||||||||||||||||||||||    
T  38879613 tctcctcattattaaaaaaatacttcttta----tgtgtatgaccaaacattttttctttggtcatatgtgaccatattagaatttctcca 38879699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 102 - 222
Target Start/End: Original strand, 11028775 - 11028896
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatc-ttttttatcaattt 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  11028775 gaggtattcttccatcgtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctccttaaaatattcaatcatctttttttatcaattt 11028874  T
Q  201 cctccttattatttaaaaaata 222  Q
    ||||||||||||| ||| ||||    
T  11028875 cctccttattattaaaacaata 11028896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 98 - 287
Target Start/End: Original strand, 37721441 - 37721629
Alignment:
Q  98 acatgaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatca-tcttttttatca 196  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||||||| | ||||||||||    
T  37721441 acatgaggtattcttccatggtcacaagaccaaatcaataatatttggacacgcgcataaaaagattctcttcaaaatattcaatcatttttttttatca 37721540  T
Q  197 atttcctccttattatttaaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    ||||||||||||||||| |||||||| |||||||            |||||||||||||||||| |||  |||||||||||||||||||||    
T  37721541 atttcctccttattattaaaaaaataattcttta--tgtgtgtgtgaccaaacactttttctttagtctcgtgaccatattagaatttctc 37721629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 106 - 287
Target Start/End: Original strand, 36400857 - 36401036
Alignment:
Q  106 tattcttccatggtcaaaagaccaaatcaataatgtttggacac--acacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcct 203  Q
    |||||||||||||||  |||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  36400857 tattcttccatggtctcaagaccaaatcaataatgtttgaacacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaattgtct 36400956  T
Q  204 ccttattatttaaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    |  ||||||| ||||||||||||||||             ||||||||||||||||| ||| ||||||||||||||||||||||    
T  36400957 c--tattattaaaaaaatacttctttatgtgtgtgtgt--ccaaacactttttctttagtcctgtgaccatattagaatttctc 36401036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 102 - 223
Target Start/End: Original strand, 3647414 - 3647536
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggacac--acacataaaaagattctcctcaaaatattcaatcatcttttttatcaatt 199  Q
    ||||||||||||| |||||| |||||||||||||||||||||| ||||  ||||||||||| |||||| | |||||||||||||||||||||||||||||    
T  3647414 gaggtattcttccttggtcacaagaccaaatcaataatgtttgaacacgaacacataaaaa-attctctttaaaatattcaatcatcttttttatcaatt 3647512  T
Q  200 tcctccttattatttaaaaaatac 223  Q
    | |||||| ||||| |||||||||    
T  3647513 ttctccttcttattaaaaaaatac 3647536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 102 - 213
Target Start/End: Complemental strand, 28734181 - 28734070
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatc-ttttttatcaattt 200  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||||||||||||    
T  28734181 gaggtattcttccacggtcacaagaccaaatcaataatgtttggacacacacataaaaa-attctcctcaaaatactcactcatctttttttatcaattt 28734083  T
Q  201 cctccttattatt 213  Q
    | || ||||||||    
T  28734082 cttctttattatt 28734070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 100 - 230
Target Start/End: Complemental strand, 6512197 - 6512062
Alignment:
Q  100 atgaggtattcttccatggtcaaaagaccaaatcaataatgtttggacaca--cacataaaaagattctcctcaaaatattcaatca---tcttttttat 194  Q
    |||||||||| ||||||||||| ||||||||||||||| ||||||||||||  |||||||||||||   |   ||||||||||||||   | ||||||||    
T  6512197 atgaggtattattccatggtcacaagaccaaatcaatagtgtttggacacacacacataaaaagatgaactctaaaatattcaatcatttttttttttat 6512098  T
Q  195 caatttcctccttattatttaaaaaatacttcttta 230  Q
    |||||||||| |||||||| |||||||| |||||||    
T  6512097 caatttcctctttattattaaaaaaatatttcttta 6512062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 102 - 230
Target Start/End: Complemental strand, 29685582 - 29685446
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttgg--acacacacataaaaagattctcctcaaaatattcaatcatctttt------tta 193  Q
    |||||||||||||||||||| | |||||||  || | |||||||  ||||||||||||||| ||||||||||||||||||||| || ||||      |||    
T  29685582 gaggtattcttccatggtcacatgaccaaagaaaaagtgtttggtcacacacacataaaaaaattctcctcaaaatattcaataatttttttttttatta 29685483  T
Q  194 tcaatttcctccttattatttaaaaaatacttcttta 230  Q
    |||||||| || |||||||| ||||||||||||||||    
T  29685482 tcaatttcttctttattattaaaaaaatacttcttta 29685446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 34480154 - 34480053
Alignment:
Q  187 ttttttatcaatttcctccttattatttaaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttct 286  Q
    ||||||||||||||||||||||||||| |||||||| |||||||            |||||||||||||||||||||| |||||||||||||||||||||    
T  34480154 ttttttatcaatttcctccttattatt-aaaaaatatttctttatatgtgtttgtgaccaaacactttttctttggtcctgtgaccatattagaatttct 34480056  T
Q  287 cca 289  Q
    |||    
T  34480055 cca 34480053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 102 - 220
Target Start/End: Complemental strand, 30706263 - 30706142
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatca-----tcttttttatca 196  Q
    |||| |||||| |||||||| ||||||||||||||| ||||||||||  |||||||||||||  |||| ||||||||||||||     | ||||||||||    
T  30706263 gaggcattcttacatggtcacaagaccaaatcaatagtgtttggaca--cacataaaaagatggtccttaaaatattcaatcatttttttttttttatca 30706166  T
Q  197 atttcctccttattatttaaaaaa 220  Q
    |||||||| ||| |||| ||||||    
T  30706165 atttcctctttactattaaaaaaa 30706142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 3949391 - 3949311
Alignment:
Q  139 tgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctccttattatttaaaaa 219  Q
    ||||||| |||| |||||||||  ||||||||||||||||||||||| ||||||||||||||| |  |||||||| |||||    
T  3949391 tgtttggtcacatacataaaaaatttctcctcaaaatattcaatcattttttttatcaatttcttttttattattaaaaaa 3949311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 28733758 - 28733717
Alignment:
Q  243 accaaacactttttctttggtcatgtgaccatattagaattt 284  Q
    |||||||||| |||||||| ||||||||||||||||||||||    
T  28733758 accaaacactatttctttgatcatgtgaccatattagaattt 28733717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 9009119 - 9009163
Alignment:
Q  243 accaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    |||||||||| ||| ||||||| ||||||||||||||||||||||    
T  9009119 accaaacactatttgtttggtcttgtgaccatattagaatttctc 9009163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 30706122 - 30706078
Alignment:
Q  243 accaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    |||||||||||||| |||| |||||||||||||||| ||||||||    
T  30706122 accaaacactttttatttgatcatgtgaccatattaaaatttctc 30706078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 274
Target Start/End: Original strand, 29685538 - 29685569
Alignment:
Q  243 accaaacactttttctttggtcatgtgaccat 274  Q
    ||||||||||||||||||||||||||||||||    
T  29685538 accaaacactttttctttggtcatgtgaccat 29685569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 6512049 - 6512016
Alignment:
Q  251 ctttttctttggtcatgtgaccatattagaattt 284  Q
    |||||| |||||||||||||||||||||||||||    
T  6512049 ctttttatttggtcatgtgaccatattagaattt 6512016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 4848161 - 4848117
Alignment:
Q  243 accaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    ||||| |||||||| |||| |||||||| ||||||||||||||||    
T  4848161 accaaccactttttatttgatcatgtgatcatattagaatttctc 4848117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 102 - 230
Target Start/End: Original strand, 33758790 - 33758918
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttc 201  Q
    |||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33758790 gaggtattcttccatggtcacaagatcaaatcaatactgtttggacacacacataaaaagattctcctcaaactattcaatcatcttttttatcaatttc 33758889  T
Q  202 ctccttattatttaaaaaatacttcttta 230  Q
    ||  |||||||||||||||||||||||||    
T  33758890 ctttttattatttaaaaaatacttcttta 33758918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 100 - 220
Target Start/End: Original strand, 34849436 - 34849557
Alignment:
Q  100 atgaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatc-ttttttatcaat 198  Q
    |||||||||| ||  ||||||| ||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  34849436 atgaggtatttttttatggtcataagacgaaatcaataatgtttcgacacacatataaaaagattctcctcaaaatattcaatcatctttttttatcaat 34849535  T
Q  199 ttcctccttattatttaaaaaa 220  Q
    || |||||||||||| ||||||    
T  34849536 tttctccttattattaaaaaaa 34849557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 23151518 - 23151442
Alignment:
Q  125 gaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23151518 gaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcatttttatcaatttc 23151442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 102 - 220
Target Start/End: Complemental strand, 2976555 - 2976439
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttc 201  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||  |||||||||||||  |||| ||||||||||||||| |||||||||||||||    
T  2976555 gaggtattcttccatggtcataagaccaaatcaatagtgtttggaca--cacataaaaagatggtccttaaaatattcaatcattttttttatcaatttc 2976458  T
Q  202 ctccttattatttaaaaaa 220  Q
     || ||| |||| ||||||    
T  2976457 ttctttaatattaaaaaaa 2976439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 102 - 287
Target Start/End: Original strand, 10719742 - 10719927
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatca-tcttttttatcaattt 200  Q
    |||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||| ||  |||| |||||||||||||| | ||||||||||||||    
T  10719742 gaggtattcttccatggtcataagaccaaattaatagtgtttggacacacacataaaaaaatggtccttaaaatattcaatcatttttttttatcaattt 10719841  T
Q  201 cctccttattatt-taaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
     ||| ||| ||||  |||||||| |||||||            |||||||||||||| |||||||||||||||||| || ||||||||    
T  10719842 tctctttactattaaaaaaaatatttcttta--tgtgtttgtgaccaaacactttttatttggtcatgtgaccataataaaatttctc 10719927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 101 - 287
Target Start/End: Complemental strand, 20524716 - 20524531
Alignment:
Q  101 tgaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaattt 200  Q
    ||||||||||||||||| ||| || || ||||||||| ||||||||||||||||| |||||||  |  | ||||||||||||||| ||||||||||||||    
T  20524716 tgaggtattcttccatgatcacaaaactaaatcaatactgtttggacacacacatcaaaagatgatgtttaaaatattcaatcattttttttatcaattt 20524617  T
Q  201 cctccttattatt-taaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    |||| ||||||||  |||||||| |||||||            |||||||||||||| |||| |||||||| ||||||||||||||||    
T  20524616 cctctttattattaaaaaaaatatttcttta--tgtgtgtgtgaccaaacactttttatttgatcatgtgatcatattagaatttctc 20524531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 37872291 - 37872196
Alignment:
Q  126 accaaatcaataatgtttggacacacaca--taaaaagattctcctcaaaatattcaatcatctt-ttttatcaatttcctccttattatttaaaa 218  Q
    |||||||||||||| ||||||||||||||  ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  37872291 accaaatcaataatatttggacacacacacataaaaagattctcatcaaaatattcaatcatctttttttatcaatttcctccttattattaaaaa 37872196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 30319804 - 30319921
Alignment:
Q  103 aggtattcttccatggtcaaaagaccaaatcaataatgtttggacacac--acataaaaagattctcctcaaaatattcaatcatcttttttatcaattt 200  Q
    ||||||| || | |||||| |||||||||||||||||||||||| || |  ||||||||| |||||| | ||||||||||||||||||||||||||||||    
T  30319804 aggtattttttcttggtcacaagaccaaatcaataatgtttggatacgcgcacataaaaa-attctctttaaaatattcaatcatcttttttatcaattt 30319902  T
Q  201 cctccttattatttaaaaa 219  Q
    ||||||| ||||| |||||    
T  30319903 cctccttcttattaaaaaa 30319921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 42285218 - 42285286
Alignment:
Q  155 taaaaagattctcctcaaaatattcaatca-tcttttttatcaatttcctccttattatttaaaaaata 222  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||    
T  42285218 taaaaagattctcctcaaaatattcaatcatttttttttatcaatttcctccttattattaaaaaaata 42285286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 100 - 220
Target Start/End: Original strand, 3454242 - 3454365
Alignment:
Q  100 atgaggtattcttccat---ggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatca 196  Q
    |||||||||||||||||   ||| | |||| |||||||||||| ||| | |||| | ||| ||||||||| || ||||||||||||||||||||||||||    
T  3454242 atgaggtattcttccatcatggttacaagatcaaatcaataatatttagtcacaaatatataaagattcttcttaaaatattcaatcatcttttttatca 3454341  T
Q  197 atttcctccttattatttaaaaaa 220  Q
    ||||| |  |||||||| ||||||    
T  3454342 atttcttttttattattaaaaaaa 3454365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 102 - 211
Target Start/End: Original strand, 8026463 - 8026577
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttgga--cacacacataaaaagattctcctcaaaatattcaatcatcttttt---tatca 196  Q
    |||||||||||| || |||| ||||||||||||||| ||||||||  || ||||||||||||||  || | ||||||||||||||| |||||   |||||    
T  8026463 gaggtattcttctatagtcacaagaccaaatcaatactgtttggacgcatacacataaaaagatggtctttaaaatattcaatcatttttttttatatca 8026562  T
Q  197 atttcctccttatta 211  Q
    |||||||| ||||||    
T  8026563 atttcctctttatta 8026577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 102 - 219
Target Start/End: Original strand, 16778131 - 16778252
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacata-aaaagattctcctcaaaatattcaatca---tcttttttatcaa 197  Q
    |||||||||||||||||||| | || ||||| || | ||||||| |||||||| | ||||||||||| | ||||||||||||||   | |||||||||||    
T  16778131 gaggtattcttccatggtcacaggatcaaatgaaaagtgtttggtcacacacacataaaagattctcattaaaatattcaatcacttttttttttatcaa 16778230  T
Q  198 tttcctccttattatttaaaaa 219  Q
    ||| | |||||||||| |||||    
T  16778231 ttttcaccttattattaaaaaa 16778252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 20654502 - 20654460
Alignment:
Q  246 aaacactttttctttggtcatgtgaccatattagaatttctcc 288  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  20654502 aaacactttttatttggtcatgtgaccatattagaatttctcc 20654460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 286
Target Start/End: Complemental strand, 21239045 - 21239003
Alignment:
Q  244 ccaaacactttttctttggtcatgtgaccatattagaatttct 286  Q
    ||||||||||||| ||||||| |||||||||||||||||||||    
T  21239045 ccaaacactttttgtttggtcttgtgaccatattagaatttct 21239003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 287
Target Start/End: Original strand, 36442660 - 36442702
Alignment:
Q  245 caaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    |||||||||||| ||||||||||||||||||||| ||||||||    
T  36442660 caaacactttttatttggtcatgtgaccatattaaaatttctc 36442702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 2467001 - 2467058
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaa 159  Q
    ||||||||||| |||||||| ||||||||||||||| | |||||||||| | ||||||    
T  2467001 gaggtattcttgcatggtcataagaccaaatcaatagtatttggacacaaatataaaa 2467058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 37872339 - 37872302
Alignment:
Q  106 tattcttccatggtcaaaagaccaaatcaataatgttt 143  Q
    |||||||||||||||| |||||||||||||||||||||    
T  37872339 tattcttccatggtcacaagaccaaatcaataatgttt 37872302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 21239475 - 21239430
Alignment:
Q  106 tattcttccatggtcaaaagaccaaatcaataatgtttggacacac 151  Q
    |||||||||||||||| |||||||||| |||| | |||||||||||    
T  21239475 tattcttccatggtcacaagaccaaataaatagtctttggacacac 21239430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 182
Target Start/End: Original strand, 36442079 - 36442160
Alignment:
Q  101 tgaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaat 182  Q
    ||||| ||||||||||| ||| ||||||||||||||| || ||||||| | ||  ||||||||  || | ||||||||||||    
T  36442079 tgagggattcttccatgctcacaagaccaaatcaatagtgattggacataaacgcaaaaagatggtctttaaaatattcaat 36442160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 3454387 - 3454431
Alignment:
Q  243 accaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    |||||| |||||||| ||| |||||||||||||||| ||||||||    
T  3454387 accaaatactttttccttgatcatgtgaccatattaaaatttctc 3454431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 16778273 - 16778317
Alignment:
Q  243 accaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    ||||| |||||||| ||||||| |||| |||||||||||||||||    
T  16778273 accaagcactttttatttggtcctgtggccatattagaatttctc 16778317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 23145973 - 23145929
Alignment:
Q  243 accaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    |||||| |||||||||||| || | ||||||||||||||||||||    
T  23145973 accaaatactttttctttgatcctatgaccatattagaatttctc 23145929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 37872173 - 37872129
Alignment:
Q  243 accaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    |||||| ||||||||||||||| | ||| ||||||||||||||||    
T  37872173 accaaatactttttctttggtcctctgatcatattagaatttctc 37872129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 102 - 287
Target Start/End: Original strand, 34998524 - 34998709
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacata--aaaagattctcctcaaaatattcaatcatcttttttatcaatt 199  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||  ||||||||||||    
T  34998524 gaggtattcttccatggtcacaagaccaaatcaataatgtttggacacacacatataaaaagattctcctcaaaatattcaatcattatttttatcaatt 34998623  T
Q  200 tcctccttattatttaaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    | |||||||||||| |||||||| |||||||            |||||| |||||||||||| |||||||||||||||||||||||||    
T  34998624 ttctccttattattaaaaaaatatttcttta--tgtgtgtgtgaccaaatactttttctttgatcatgtgaccatattagaatttctc 34998709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 101 - 230
Target Start/End: Original strand, 8541426 - 8541556
Alignment:
Q  101 tgaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatca-tcttttttatcaatt 199  Q
    |||| |||||||  ||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| | |||||||||||||    
T  8541426 tgagatattcttttatggtcacaagaccaaatcaataatgtttgaacacacacgtaaaaagattctcctcaaaatattcaatcattattttttatcaatt 8541525  T
Q  200 tcctccttattatttaaaaaatacttcttta 230  Q
    |||||||||||||| ||||||||||||||||    
T  8541526 tcctccttattattaaaaaaatacttcttta 8541556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 103 - 192
Target Start/End: Complemental strand, 39188068 - 39187979
Alignment:
Q  103 aggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatctttttt 192  Q
    ||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||  |||| ||||||||||||||| ||||||    
T  39188068 aggtattcttccatggtcagaagaccaaatcaatagtatttggacacacgcataaaaagatggtccttaaaatattcaatcatttttttt 39187979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 102 - 230
Target Start/End: Original strand, 10544987 - 10545118
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttt--tttatcaatt 199  Q
    |||||||||||||| | ||| |||||| |||||||| | |||||| ||||||||||||||||| |  | ||||||||||||||| |||  ||||||||||    
T  10544987 gaggtattcttccacgatcacaagaccgaatcaatagtatttggagacacacataaaaagattatttttaaaatattcaatcattttttatttatcaatt 10545086  T
Q  200 tcctccttattatttaaaaaa-tacttcttta 230  Q
    ||||| |||||||| |||||| ||||||||||    
T  10545087 tcctctttattattaaaaaaagtacttcttta 10545118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 105 - 287
Target Start/End: Complemental strand, 30783589 - 30783412
Alignment:
Q  105 gtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctc 204  Q
    ||||||||| ||||||| ||||| |||| |||| ||||||||||||||  |||||||||  | || |||||||| ||| || ||||||||||||||||||    
T  30783589 gtattcttctatggtcagaagactaaattaatagtgtttggacacaca--taaaaagatggttcttaaaatatttaattat-ttttttatcaatttcctc 30783493  T
Q  205 cttattatttaaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
     || ||||| |||||||| |||||||            |||||||||||||| ||||||||||||||||| ||||||||||||    
T  30783492 tttcttattaaaaaaatatttcttta--tgtgtgtgtgaccaaacactttttatttggtcatgtgaccattttagaatttctc 30783412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 103 - 287
Target Start/End: Complemental strand, 45627527 - 45627340
Alignment:
Q  103 aggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacaca---taaaaagattctcctcaaaatattcaatcatcttttttatcaatt 199  Q
    ||||||||||||||||||| | ||||||||||||| ||||| ||||||||||    ||||| ||| |||| |||||||| |||||| |||||||||||||    
T  45627527 aggtattcttccatggtcacaggaccaaatcaatagtgttttgacacacacacataaaaaaaattgtccttaaaatatttaatcattttttttatcaatt 45627428  T
Q  200 tcctccttattatt--taaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    ||||   |||||||   |||||||| |||||||            |||||||| ||||| ||||||||||||||||| ||||||||||||    
T  45627427 tcctttatattattaaaaaaaaatatttcttta--tgtgtgtgtgaccaaacagtttttatttggtcatgtgaccattttagaatttctc 45627340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 40076753 - 40076684
Alignment:
Q  154 ataaaaagattctcctcaaaatattcaatcatctttttt-atcaatttcctccttattatttaaaaaata 222  Q
    |||||||||||||  | |||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  40076753 ataaaaagattcttttaaaaatattcaatcatctttttttatcaatttcctccttattattaaaaaaata 40076684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 287
Target Start/End: Original strand, 46023139 - 46023309
Alignment:
Q  117 ggtcaaaagaccaaatcaataatgtttgg--acacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctccttattattt 214  Q
    ||||| ||||||||||||||| |||||||  ||||||||||||||||||  |  | ||||||||||||||| |||||||||||||| ||  ||| ||||     
T  46023139 ggtcacaagaccaaatcaatattgtttggacacacacacataaaaagatggtttttaaaatattcaatcat-ttttttatcaattttctttttactatta 46023237  T
Q  215 aaa-aaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    ||| ||||| |||||||            |||||||| ||||| ||||||||| ||||||||||||||||||||    
T  46023238 aaataaatatttcttta--tgcgtgtatgaccaaacattttttatttggtcatctgaccatattagaatttctc 46023309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 32676800 - 32676881
Alignment:
Q  111 ttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatctttttt 192  Q
    ||||||||||| ||||||||||||||| |||||||| |||||  |||||||||  |||  ||| ||||||||||| ||||||    
T  32676800 ttccatggtcacaagaccaaatcaatagtgtttggatacacatgtaaaaagatggtccctaaactattcaatcatttttttt 32676881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 32677080 - 32677124
Alignment:
Q  243 accaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    |||||||| ||||| |||| |||||||||||||||||||||||||    
T  32677080 accaaacattttttatttgatcatgtgaccatattagaatttctc 32677124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 100 - 220
Target Start/End: Original strand, 22220204 - 22220325
Alignment:
Q  100 atgaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatc-ttttttatcaat 198  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  22220204 atgaggtattcttccatggtcaaaagatcaaatcaataatgtttgtacacacacataaaaagattcttctcaaaatattcaatcatctttttttatcaat 22220303  T
Q  199 ttcctccttattatttaaaaaa 220  Q
    ||||||||||||||| ||||||    
T  22220304 ttcctccttattattaaaaaaa 22220325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 44880253 - 44880370
Alignment:
Q  105 gtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctc 204  Q
    |||||||| |||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  44880253 gtattctttcatggtcacaagaccaaatcaataatgtttgaacacacacataaaacgattctcctcaaaatattcagtcatcttttttatcaatttcctc 44880352  T
Q  205 cttattatttaaaaaata 222  Q
    ||||||||| ||||||||    
T  44880353 cttattattaaaaaaata 44880370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 102 - 287
Target Start/End: Original strand, 2008395 - 2008580
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacata--aaaagattctcctcaaaatattcaatcatcttttttatcaatt 199  Q
    |||| ||||||||||| ||| ||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  2008395 gaggcattcttccatgatcacaagaccaaatcaataatatttggacacacacatataaaaagattctcctcaaaatattcaatcatcttttttatcaatt 2008494  T
Q  200 tcctccttattatttaaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    | |||||||||||| ||||||||||  ||||             ||||||||| ||||||||||| ||||||||||||||||||||||    
T  2008495 ttctccttattattaaaaaaatactaatttatgtgtgtgtgg--ccaaacactatttctttggtcctgtgaccatattagaatttctc 2008580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 106 - 230
Target Start/End: Complemental strand, 22831281 - 22831157
Alignment:
Q  106 tattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctcc 205  Q
    ||||||||  |||||| ||||| ||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  22831281 tattcttctctggtcacaagactaaatcaataatatttggacacacacatataaagattcttctcaaaatattcaatcatcttttttatcactttcctcc 22831182  T
Q  206 ttattatttaaaaaatacttcttta 230  Q
    |||||||| ||||||||||||||||    
T  22831181 ttattattaaaaaaatacttcttta 22831157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 100 - 226
Target Start/End: Complemental strand, 39056987 - 39056862
Alignment:
Q  100 atgaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatt 199  Q
    |||| ||||||||||||| ||  ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||    
T  39056987 atgatgtattcttccatgatcgcaagaccaaatctataatgtttggacacacacataaaaagattttcctcaaaatattcaatcatct-ttttatcgatt 39056889  T
Q  200 tcctccttattatttaaaaaatacttc 226  Q
    | ||||||| |||| ||||||||||||    
T  39056888 ttctccttaatattaaaaaaatacttc 39056862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 106 - 213
Target Start/End: Complemental strand, 1994957 - 1994850
Alignment:
Q  106 tattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctcc 205  Q
    |||||| | ||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||     
T  1994957 tattctactatggtcacaagaccaaatcaataatgtttggacaaacacacaaaaagattctcctgaaaatattcaatcatcttttttatcaattacctct 1994858  T
Q  206 ttattatt 213  Q
    ||||||||    
T  1994857 ttattatt 1994850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 97 - 230
Target Start/End: Complemental strand, 26466447 - 26466312
Alignment:
Q  97 gacatgaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttt---ta 193  Q
    |||| |||||||||||||||||||| |||| ||||| ||||||||||| ||||| | |||||||||||||  | ||||||||||||  | |||||   ||    
T  26466447 gacaagaggtattcttccatggtcacaagatcaaattaataatgtttgaacacatatataaaaagattctttttaaaatattcaattgtttttttttata 26466348  T
Q  194 tcaatttcctccttattatttaaaaaatacttcttta 230  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  26466347 tcaattttctccttatta-ttaaaaaatacttcttta 26466312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 126 - 229
Target Start/End: Original strand, 28297695 - 28297798
Alignment:
Q  126 accaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctccttattatttaaaaaatactt 225  Q
    ||||||||||||| ||||||||| | | |||||||||||||||| || |||||| ||||| | |||||||||||||||| |||||||| |||||||| ||    
T  28297695 accaaatcaataaagtttggacatatatataaaaagattctccttaacatattcgatcatttcttttatcaatttcctctttattattaaaaaaatattt 28297794  T
Q  226 cttt 229  Q
    ||||    
T  28297795 cttt 28297798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 101 - 287
Target Start/End: Complemental strand, 45805645 - 45805455
Alignment:
Q  101 tgaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatctttt------ttat 194  Q
    ||||||||||||||||| | | |||| |||||||||| |||||| ||||||||||||||||||  || | |||||||| ||| || ||||      ||||    
T  45805645 tgaggtattcttccatgattacaagatcaaatcaatagtgtttgcacacacacataaaaagatggtctttaaaatatttaattattttttatttatttat 45805546  T
Q  195 caatttcctccttattatttaaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    |||||||||| |||||||  |||||| | || ||||            |||||||||||||| ||||||||||||||||||||||||||||||    
T  45805545 caatttcctctttattataaaaaaaacatttgtttatgtgtatgtg--accaaacactttttatttggtcatgtgaccatattagaatttctc 45805455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 230
Target Start/End: Original strand, 47169243 - 47169378
Alignment:
Q  103 aggtattcttccatggtcaaaagaccaaatcaataatgtttgg--acacacacataaaaagattctcctcaaaatattcaatca------tcttttttat 194  Q
    ||||||||||  || |||| ||||||||||||||| |||||||  |||||||||||||||||   |||  ||||||||||||||      | ||||||||    
T  47169243 aggtattcttttatagtcataagaccaaatcaatagtgtttggacacacacacataaaaagagggtccataaaatattcaatcattttttttttttttat 47169342  T
Q  195 caatttcctccttattatttaaaaaatacttcttta 230  Q
    |||||||||| |||||||| ||||| || |||||||    
T  47169343 caatttcctctttattattaaaaaattatttcttta 47169378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 25199079 - 25199123
Alignment:
Q  243 accaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  25199079 accaaacactttttctttggtcctgtgaccatattagaatttctc 25199123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 230
Target Start/End: Original strand, 14784945 - 14785052
Alignment:
Q  125 gaccaaatcaataatgtttgga--cacacacataaaaagattctcctcaaaatattcaatc-atcttttttatcaatttcctccttattatttaaaaaat 221  Q
    |||||||| |||| |||||||   |||||||||||| ||||| |  |||||||||||||||  | |||||||||||||||||  |||||| |||||||||    
T  14784945 gaccaaataaatagtgtttgggggcacacacataaagagattattatcaaaatattcaatcttttttttttatcaatttcctttttatta-ttaaaaaat 14785043  T
Q  222 acttcttta 230  Q
    |||||||||    
T  14785044 acttcttta 14785052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 1994825 - 1994781
Alignment:
Q  243 accaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||    
T  1994825 accaaatactatttctttggtcatgtgaccatattagaatttctc 1994781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 287
Target Start/End: Original strand, 22220346 - 22220389
Alignment:
Q  244 ccaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||||    
T  22220346 ccaaatactttttctttggtcctgtgaccatattaaaatttctc 22220389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 34060958 - 34061003
Alignment:
Q  243 accaaacactttttctttggtcatgtgaccatattagaatttctcc 288  Q
    |||||||||| ||| ||||||| ||||||||| |||||||||||||    
T  34060958 accaaacactatttgtttggtcttgtgaccatgttagaatttctcc 34061003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 22831143 - 22831103
Alignment:
Q  246 aaacactttttctttggtcatgtgaccatattagaatttct 286  Q
    |||||||||||||||| || ||||||||||||| |||||||    
T  22831143 aaacactttttctttgatcctgtgaccatattaaaatttct 22831103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 106 - 287
Target Start/End: Complemental strand, 46550813 - 46550632
Alignment:
Q  106 tattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctcc 205  Q
    |||||||||||||||| |||||||||||||||||||||  ||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| |||     
T  46550813 tattcttccatggtcacaagaccaaatcaataatgtttaaacacatacataaaaagattctcctctaaatattcaatcatcatttttatcaattttctct 46550714  T
Q  206 ttattatt--taaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    ||||||||   ||||||||||||||||            |||||||||||||||||||||| ||||||||||||||||||||||    
T  46550713 ttattattaaaaaaaaatacttcttta--tgtgtgtgtgaccaaacactttttctttggtcttgtgaccatattagaatttctc 46550632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 106 - 287
Target Start/End: Complemental strand, 47541918 - 47541737
Alignment:
Q  106 tattcttccatggtcaaaagaccaaatcaataatgtttggacacacaca--taaaaagattctcctcaaaatattcaatcatcttttttatcaatttcct 203  Q
    ||||||| |||| ||| |||| |||||||||||| ||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47541918 tattctttcatgatcacaagatcaaatcaataatatttggacacacacacataaaaagattttcctcaaaatattcaatcatcttttttatcaatttcct 47541819  T
Q  204 ccttattatttaaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
     ||||||||| |||||||| || ||||            ||||||||||||||||||| ||  |||||||||||||||||||||    
T  47541818 tcttattattaaaaaaatattttttta--tgtgtgtgtgaccaaacactttttctttgatctcgtgaccatattagaatttctc 47541737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 17056614 - 17056739
Alignment:
Q  105 gtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacata-aaaagattctcctcaaaatattcaatcatcttttttatcaatttcct 203  Q
    ||||||||||||||||| ||||||||||||||| |||||| | ||||||||| |||| ||| |||| |||||||| |||||| |||||||||||||||||    
T  17056614 gtattcttccatggtcacaagaccaaatcaatagtgtttgaatacacacatataaaaaattgtccttaaaatatttaatcat-ttttttatcaatttcct 17056712  T
Q  204 ccttattatttaaaaaatacttcttta 230  Q
    | |||||||| |||||||| |||||||    
T  17056713 ctttattattaaaaaaatatttcttta 17056739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 41464915 - 41464796
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggac--acacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatt 199  Q
    ||||||||||| |||||||| |||| ||||||||||||  ||  ||  |||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  41464915 gaggtattctttcatggtcacaagatcaaatcaataatacttaaacatacacacataaaaagattctcttcaaaatactcaatcatcttttttatcaatt 41464816  T
Q  200 tcctccttattatttaaaaa 219  Q
    || || |||||||| |||||    
T  41464815 tcttctttattattaaaaaa 41464796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 103 - 230
Target Start/End: Complemental strand, 52920200 - 52920071
Alignment:
Q  103 aggtattcttccatggtcaaaagaccaaatcaataatgttt--ggacacacacataaaaagattctcctcaaaatattcaatca-tcttttttatcaatt 199  Q
    ||||||||||||||||||| |||||||||||||||||||||    ||| | | |||||||||||  | | |||||||||||||| | |||||||||||||    
T  52920200 aggtattcttccatggtcacaagaccaaatcaataatgtttaaatacatataaataaaaagatttacttaaaaatattcaatcatttttttttatcaatt 52920101  T
Q  200 tcctccttattatttaaaaaatacttcttta 230  Q
    | ||| |||||| ||||||||||||||||||    
T  52920100 ttctctttatta-ttaaaaaatacttcttta 52920071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 100 - 220
Target Start/End: Complemental strand, 20679957 - 20679834
Alignment:
Q  100 atgaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacata---aaaagattctcctcaaaatattcaatcatcttttttatca 196  Q
    ||||||||||||| |||||||  |||| |||||||||| |||||||||||||||| |   |||| ||  || | |||||||||||| || ||||||||||    
T  20679957 atgaggtattctttcatggtctcaagatcaaatcaatagtgtttggacacacacacataaaaaaaatggtctttaaaatattcaattattttttttatca 20679858  T
Q  197 atttcctccttattatttaaaaaa 220  Q
    |||||||| |||||||| ||||||    
T  20679857 atttcctctttattattaaaaaaa 20679834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 47833512 - 47833614
Alignment:
Q  123 aagaccaaatcaataatgtttggaca--cacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctccttattatttaaaaaa 220  Q
    ||||||||||| ||| || |||||||  ||||||||||||||   |||||||||||||||||||| | |||||||||||||||| |||||||| ||| ||    
T  47833512 aagaccaaatctatagtggttggacatacacacataaaaagaccatcctcaaaatattcaatcat-tattttatcaatttcctctttattattaaaataa 47833610  T
Q  221 tact 224  Q
    ||||    
T  47833611 tact 47833614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 230
Target Start/End: Complemental strand, 39503616 - 39503487
Alignment:
Q  105 gtattcttccatggtcaaaagaccaaatcaataatgtttggacaca--cacataaaaagattctcctcaaaatattcaatcatctttttt--atcaattt 200  Q
    ||||||||| ||||||| ||||| ||||||||| |||||| |||||  |||||||||||||  || | |||||||| |||  | ||||||  ||||||||    
T  39503616 gtattcttctatggtcacaagactaaatcaatagtgtttgaacacatacacataaaaagatgatctttaaaatatttaatttttttttttttatcaattt 39503517  T
Q  201 cctccttattatttaaaaaatacttcttta 230  Q
    |||| |||||||| |||||||| |||||||    
T  39503516 cctctttattattaaaaaaatatttcttta 39503487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 228
Target Start/End: Complemental strand, 15827229 - 15827109
Alignment:
Q  111 ttccatggtcaaaagaccaaatcaataatgtttgga--cacacacataaaaagattctcctcaaaatattcaatcatctttttt-atcaatttcctcctt 207  Q
    ||||||||||| |||||| |||||||||| |||| |  ||||||||||||||||||||  |||||||||||||| || |||||| |||||||| || |||    
T  15827229 ttccatggtcacaagaccgaatcaataatatttgaatacacacacataaaaagattcttgtcaaaatattcaattattttttttcatcaattttct-ctt 15827131  T
Q  208 att-atttaaaaaatacttctt 228  Q
    ||| ||  ||||||||||||||    
T  15827130 attaataaaaaaaatacttctt 15827109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 42969971 - 42970060
Alignment:
Q  141 tttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctccttattatttaaaaaatacttcttta 230  Q
    |||| ||||||  ||||||||||| |||| ||||||||||||| | ||||||||||||||  || |||||||| ||||||||||| ||||    
T  42969971 tttgaacacacgtataaaaagattatccttaaaatattcaatctttttttttatcaattttatctttattattaaaaaaatacttattta 42970060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 36364963 - 36364897
Alignment:
Q  114 catggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattca 180  Q
    |||||||  |||||||||||||||||||||||||||||| ||||||| ||  |||| ||||||||||    
T  36364963 catggtcgcaagaccaaatcaataatgtttggacacacatataaaaatatggtccttaaaatattca 36364897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 46381481 - 46381568
Alignment:
Q  118 gtcaaaagaccaaatcaataatgtttggacacaca--cataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcct 203  Q
    |||| |||||||||| |||| ||||||  ||||||  |||||| ||||| |||| |||| |||||||||| |||||||||||||||||    
T  46381481 gtcacaagaccaaataaatagtgtttgagcacacatacataaagagattatcctaaaaacattcaatcattttttttatcaatttcct 46381568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 47732466 - 47732510
Alignment:
Q  245 caaacactttttctttggtcatgtgaccatattagaatttctcca 289  Q
    |||||| |||||||||| || ||||||||||||||||||||||||    
T  47732466 caaacaatttttctttgatcctgtgaccatattagaatttctcca 47732510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 47732409 - 47732444
Alignment:
Q  187 ttttttatcaatttcctccttattatttaaaaaata 222  Q
    ||||||||||||||||||||||||||| ||||||||    
T  47732409 ttttttatcaatttcctccttattattaaaaaaata 47732444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 9e-40; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 102 - 287
Target Start/End: Original strand, 7080149 - 7080334
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacaca--taaaaagattctcctcaaaatattcaatcatcttttttatcaatt 199  Q
    |||||||||||| ||||||| | ||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||| ||||||||||||||||    
T  7080149 gaggtattcttctatggtcacatgaccaaatcaataatgtttggacacacacacataaaaagattctcttcaaaatattcaataatcttttttatcaatt 7080248  T
Q  200 tcctccttattatttaaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    || || ||| |||| ||||||||||||||||            |||||| | ||| | ||||||||||||||||||||||||||||||    
T  7080249 tcgtctttaatattaaaaaaatacttctttatctatgtgtg--accaaatagtttctttttggtcatgtgaccatattagaatttctc 7080334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 106 - 284
Target Start/End: Complemental strand, 2141348 - 2141175
Alignment:
Q  106 tattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatct-tttttatcaatttcctc 204  Q
    |||||||||||||||| |||| || |||||||| |||||||||| |||||||||||||| | |||||||||||||||||||| |||||||||||||||||    
T  2141348 tattcttccatggtcacaagatcatatcaataacgtttggacacccacataaaaagatttttctcaaaatattcaatcatctatttttatcaatttcctc 2141249  T
Q  205 cttattatttaaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaattt 284  Q
     |||||||| ||| |||| ||| |||            ||||||||||||||||||| |||| |||||||||||||||||    
T  2141248 attattattaaaacaataattcatta------tgtgtgaccaaacactttttctttgatcatatgaccatattagaattt 2141175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 102 - 220
Target Start/End: Complemental strand, 25337027 - 25336907
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggaca--cacacataaaaagattctcctcaaaatattcaatcatcttttttatcaa-t 198  Q
    ||||||||||||| |||||| |||| |||||||||||||||||||||  |||||||||||| |||||| | ||||||||||||||||||||||||||| |    
T  25337027 gaggtattcttccttggtcacaagatcaaatcaataatgtttggacacgcacacataaaaa-attctctttaaaatattcaatcatcttttttatcaatt 25336929  T
Q  199 ttcctccttattatttaaaaaa 220  Q
    |||||| || ||||| ||||||    
T  25336928 ttcctcattcttattaaaaaaa 25336907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 222
Target Start/End: Complemental strand, 17852829 - 17852709
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaa-tcatcttttttatcaattt 200  Q
    ||||||| ||||||||  ||||| || ||||||||||||||| |||||| ||||| |||||||    ||||||||||||| |  | |||||||| |||||    
T  17852829 gaggtatccttccatga-caaaatactaaatcaataatgtttagacacatacatacaaagatttctatcaaaatattcaattttttttttttattaattt 17852731  T
Q  201 cctccttattatttaaaaaata 222  Q
     |||||||||||| ||||||||    
T  17852730 tctccttattattaaaaaaata 17852709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 994884 - 994928
Alignment:
Q  243 accaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    |||||||||| ||| ||||||| ||||||||| ||||||||||||    
T  994884 accaaacactatttatttggtcttgtgaccatgttagaatttctc 994928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 291
Target Start/End: Original strand, 26606227 - 26606275
Alignment:
Q  243 accaaacactttttctttggtcatgtgaccatattagaatttctccaca 291  Q
    |||||||||||||| || |||  ||||||||| ||||||||||||||||    
T  26606227 accaaacactttttgttcggtattgtgaccatgttagaatttctccaca 26606275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 106 - 287
Target Start/End: Original strand, 35366 - 35547
Alignment:
Q  106 tattcttccatggtcaaaagaccaaatcaataatgtttggacacaca--cataaaaagattctcctcaaaatattcaatcatc-ttttttatcaatttcc 202  Q
    |||||||||||||||| ||||||||||||||||| |||| ||| |||  |||||||||||||||||||||||||||||||||| |||||||||||||||     
T  35366 tattcttccatggtcacaagaccaaatcaataatatttgaacatacatacataaaaagattctcctcaaaatattcaatcatctttttttatcaatttct 35465  T
Q  203 tccttattatttaaaaaatacttctttannnnnnnnnnnnaccaaacactttttctttggtcatgtgaccatattagaatttctc 287  Q
    | ||||||||| |||||||| || |||             ||||||||||||||||||| ||||||||| |||||| ||||||||    
T  35466 ttcttattattaaaaaaatattttttt---tatgcgtgtgaccaaacactttttctttgatcatgtgacgatattaaaatttctc 35547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 100 - 220
Target Start/End: Complemental strand, 18169 - 18047
Alignment:
Q  100 atgaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcat--cttttttatcaa 197  Q
    |||||||||||||||||||| | |||| | ||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||   |||||||| ||    
T  18169 atgaggtattcttccatggttacaagatccaatcaataatgtttgaacacacatagaaaaagattctcctcaaaatattcaatcattctttttttattaa 18070  T
Q  198 tttcctccttattatttaaaaaa 220  Q
    ||| |||||||| | ||||||||    
T  18069 ttttctccttatcaattaaaaaa 18047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 18022 - 17977
Alignment:
Q  243 accaaacacttttt-ctttggtcatgtgaccatattagaatttctc 287  Q
    |||||||||||||| ||||||||  |||||||||||||||||||||    
T  18022 accaaacacttttttctttggtcccgtgaccatattagaatttctc 17977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 25684 - 25773
Alignment:
Q  102 gaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttt 191  Q
    |||||||||||||||| |||  |||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||| |||||    
T  25684 gaggtattcttccatgatcacgagaccaaatcaataatgtttggacacacacgtaaaaagattttcatcaaaatattcaatcattttttt 25773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 25974 - 26018
Alignment:
Q  244 ccaaacactttttctttggtcatgtgaccatattagaatttctcc 288  Q
    |||||||||||| || |||||||||||||||||||||||||||||    
T  25974 ccaaacacttttcctatggtcatgtgaccatattagaatttctcc 26018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 213
Target Start/End: Complemental strand, 170 - 57
Alignment:
Q  101 tgaggtattcttccatggtcaaaagaccaaatcaataatgtttggacacac--acataaaaagattctcctcaaaatattcaatcatcttttttatcaat 198  Q
    ||||||||||||||||| ||| ||||||||||||||| |||||||||||||  ||||||||||||  || | ||||||||||||||| ||||||||||||    
T  170 tgaggtattcttccatgatcacaagaccaaatcaatagtgtttggacacacatacataaaaagatagtcttaaaaatattcaatcat-ttttttatcaat 72  T
Q  199 ttcctccttattatt 213  Q
    ||| || ||||||||    
T  71 ttcatctttattatt 57  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0830 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0830
Description:

Target: scaffold0830; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 5462 - 5379
Alignment:
Q  131 atcaataatgtttggacacaca--cataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctccttattatt 213  Q
    ||||||| ||||||||||||||  |||||||||||  || | ||||||||||||||| ||||||||||||||| || ||||||||    
T  5462 atcaatagtgtttggacacacatacataaaaagatagtcttaaaaatattcaatcat-ttttttatcaatttcatctttattatt 5379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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