View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8417_low_8 (Length: 399)
Name: NF8417_low_8
Description: NF8417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8417_low_8 |
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| [»] scaffold0565 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Original strand, 36361282 - 36361650
Alignment:
| Q |
18 |
aatatagtatgtgacaataaacaaaagaaaatttaaatgctccaaaagaaataacacattccaagaacattaactatggtagtgacacaatttaatatgc |
117 |
Q |
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| T |
36361282 |
aatatagtatgtgacaataaacaaaagaaaatttaaatgctccaaaagaaataacacattccaagaacattaactatggtagtgacacaatttaatatgc |
36361381 |
T |
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| Q |
118 |
cactagcaagaccatgctgatag-atcagagctgagctaagtggctaatatcaataggataagcatcatctggagattgagcactgtaagctctctgagc |
216 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36361382 |
cactagcaagaccatgctgataggatcagagctgagctaagtggctaatatcaataggataagcatcatctggagattgagcactgtaagctctctgagc |
36361481 |
T |
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| Q |
217 |
aacaacaacatttccagcttcagttggatgaaaagcatcccaaaacaaatactctcttctgttctcacatggtgtttgcaatggtagacatgtaaattga |
316 |
Q |
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| T |
36361482 |
aacaacaacatttccagcttcagttggatgaaaagcatcccaaaacaaatactctcttctgttctcacatggtgtttgcaatggtagacatgtaaattga |
36361581 |
T |
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| Q |
317 |
ccattgtttcttcctactccacagcatccagcatttgtaacactaaaacctgaaaattaaattgatgtc |
385 |
Q |
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| T |
36361582 |
ccattgtttcttcctactccacagcatccagcatttgtaacactaaaacctgaaaattaaattgatgtc |
36361650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 232 - 364
Target Start/End: Original strand, 3067771 - 3067903
Alignment:
| Q |
232 |
agcttcagttggatgaaaagcatcccaaaacaaatactctcttctgttctcacatggtgtttgcaatggtagacatgtaaattgaccattgtttcttcct |
331 |
Q |
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| T |
3067771 |
agcttcagttgaataaaaagcatcccaaaacaagtactatcttctgttctcacatggtgtttgcattggtagacatataatttgaccatttttccttcct |
3067870 |
T |
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| Q |
332 |
actccacagcatccagcatttgtaacactaaaa |
364 |
Q |
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| T |
3067871 |
actccacaacatccaacatttgtaacactaaaa |
3067903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 376
Target Start/End: Complemental strand, 7617159 - 7617087
Alignment:
| Q |
304 |
acatgtaaattgaccattgtttcttcctactccacagcatccagcatttgtaacactaaaacctgaaaattaa |
376 |
Q |
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| T |
7617159 |
acatgtaatttgaccattgtttcttcctattccacaacacccttcatttgtaacccttatgcctgaaaattaa |
7617087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 144 - 375
Target Start/End: Original strand, 3601 - 3832
Alignment:
| Q |
144 |
agagctgagctaagtggctaatatcaataggataagcatcatctggagattgagcactgtaagctctctgagcaacaacaacatttccagcttcagttgg |
243 |
Q |
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|||| ||||||||| | ||||||||||||| |||||||| || |||||||||| |||||||||| | ||| |||| ||||||||||||||||| |
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| T |
3601 |
agagttgagctaagcgattaatatcaatagggtaagcatctgatgcagattgagcattgtaagctcttctaccaataacactgtttccagcttcagttgg |
3700 |
T |
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| Q |
244 |
atgaaaagcatcccaaaacaaatactctcttctgttctcacatggtgtttgcaatggtagacatgtaaattgaccattgtttcttcctactccacagcat |
343 |
Q |
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| T |
3701 |
atgaaatgcatcccaaaataagaacccattcctatccctacatgcaggttgaaagggcaaacatgtaatttgaccattgtttcttcctacaccacagcat |
3800 |
T |
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| Q |
344 |
ccagcatttgtaacactaaaacctgaaaatta |
375 |
Q |
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| T |
3801 |
ccagcatttgtaactctaaaacctgaaaatta |
3832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 298 - 366
Target Start/End: Complemental strand, 36648385 - 36648317
Alignment:
| Q |
298 |
tggtagacatgtaaattgaccattgtttcttcctactccacagcatccagcatttgtaacactaaaacc |
366 |
Q |
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| T |
36648385 |
tggtagacatgtaatttgaccattgttccttcctactccacggcatccaacatttataacactaaaacc |
36648317 |
T |
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