View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8418_low_4 (Length: 293)

Name: NF8418_low_4
Description: NF8418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8418_low_4
NF8418_low_4
[»] chr1 (17 HSPs)
chr1 (1-282)||(30367769-30368050)
chr1 (62-246)||(13007511-13007695)
chr1 (62-251)||(13069868-13070057)
chr1 (62-245)||(19727464-19727647)
chr1 (62-245)||(13101311-13101494)
chr1 (64-251)||(13214132-13214319)
chr1 (8-205)||(13064951-13065148)
chr1 (39-162)||(13244299-13244422)
chr1 (62-232)||(13204770-13204940)
chr1 (59-204)||(13161829-13161974)
chr1 (39-198)||(13271877-13272036)
chr1 (59-204)||(13094707-13094852)
chr1 (59-204)||(13130136-13130281)
chr1 (60-144)||(12963707-12963791)
chr1 (68-162)||(19278946-19279040)
chr1 (58-162)||(13080643-13080747)
chr1 (50-144)||(13086409-13086503)
[»] chr6 (1 HSPs)
chr6 (6-232)||(31396386-31396613)


Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 30368050 - 30367769
Alignment:
Q  1 gactagcttatcaaggttttccactattgaagttatccaattctcatgttgtgatacacaattatctttgatctcttgaataattttggcttccacaata 100  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30368050 gactagcttatcaaggctttccaccattgaagttatccaattctcatgttttgatacacaattatctttgatctcttgaataattttggcttccacaata 30367951  T
Q  101 ggatgagttgaaacaagccagaaaaaccaactgagacttgaacttattgtgccattacctgctaacaaaagagagagtgcattgtctctaagatacttct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30367950 ggatgagttgaaacaagccagaaaaaccaactgagacttgaactaagtgtgccattacctgctaacaaaagagagagtgcattgtctctaagatacttct 30367851  T
Q  201 cactcactccctcatttccagaaccttccttcatcagtgcttttactaagttgaaataagattcatccatttcttctctgct 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  30367850 cactcactccctcatttccagaaccttccttcatcagtgcttttacaaagttgaaataagattcatccatttcttcactgct 30367769  T

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Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 62 - 246
Target Start/End: Original strand, 13007511 - 13007695
Alignment:
Q  62 ttatctttgatctcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacttgaacttattgtgccattacctg 161  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||    
T  13007511 ttatctttgatttcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacctgaactaattgtgccatttcctg 13007610  T
Q  162 ctaacaaaagagagagtgcattgtctctaagatacttctcactcactccctcatttccagaaccttccttcatcagtgcttttac 246  Q
    |||| || |||| |||  ||||||||||||||||||||||   || |||| | |||||||  ||||||||||| |||||||||||    
T  13007611 ctaaaaagagagtgaggacattgtctctaagatacttctcgtccattcccccgtttccagctccttccttcataagtgcttttac 13007695  T

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Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 62 - 251
Target Start/End: Complemental strand, 13070057 - 13069868
Alignment:
Q  62 ttatctttgatctcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacttgaacttattgtgccattacctg 161  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | ||||||||| ||||    
T  13070057 ttatcttttatttcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacctgaagtaactgtgccatttcctg 13069958  T
Q  162 ctaacaaaagagagagtgcattgtctctaagatacttctcactcactccctcatttccagaaccttccttcatcagtgcttttactaagt 251  Q
    |||| || |||||||||||||||||||||||||||||||||  || ||||    ||||| |  |||||||||||||||||||||| ||||    
T  13069957 ctaaaaagagagagagtgcattgtctctaagatacttctcatccattccccttgttccatattcttccttcatcagtgcttttacaaagt 13069868  T

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Target: chr1; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 62 - 245
Target Start/End: Original strand, 19727464 - 19727647
Alignment:
Q  62 ttatctttgatctcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacttgaacttattgtgccattacctg 161  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| || ||| | || |||||| ||||    
T  19727464 ttatctttgatttcttgaataattttggcttcgacaataggatgagtcgaaacaagccaaaaaaaccaactgagacctgtactaactgggccatttcctg 19727563  T
Q  162 ctaacaaaagagagagtgcattgtctctaagatacttctcactcactccctcatttccagaaccttccttcatcagtgctttta 245  Q
    |||| || |||| ||||  |||||||||||||||||||||| ||| | || | |||||||| ||||||||||| ||||||||||    
T  19727564 ctaaaaagagagtgagtaaattgtctctaagatacttctcattcatttccccctttccagatccttccttcattagtgctttta 19727647  T

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Target: chr1; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 62 - 245
Target Start/End: Original strand, 13101311 - 13101494
Alignment:
Q  62 ttatctttgatctcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacttgaacttattgtgccattacctg 161  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||| | || |||||| ||||    
T  13101311 ttatctttgatttcttgaattattttggcttccacaataggatgagtggaaacaagccagaaaaaccaactgagagctgaactaactgggccatttcctg 13101410  T
Q  162 ctaacaaaagagagagtgcattgtctctaagatacttctcactcactccctcatttccagaaccttccttcatcagtgctttta 245  Q
    |||| || |||| || | |||||||||||||||||||||||  || | || | |||||||| ||||||||| | ||||||||||    
T  13101411 ctaaaaagagagtgattacattgtctctaagatacttctcatccatttccccctttccagatccttccttcgttagtgctttta 13101494  T

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Target: chr1; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 64 - 251
Target Start/End: Original strand, 13214132 - 13214319
Alignment:
Q  64 atctttgatctcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacttgaacttattgtgccattacctgct 163  Q
    |||||| || |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||| |||||  | || |||||| ||||||    
T  13214132 atcttttatttcttgaataattttagcttccacaataagatgagttgaaacaagccagaaaaaccaaatgagacctgaacgaactgggccatttcctgct 13214231  T
Q  164 aacaaaagagagagtgcattgtctctaagatacttctcactcactccctcatttccagaaccttccttcatcagtgcttttactaagt 251  Q
    || || |||| ||  ||||||||||||||||||||||||  || | || | |||||| | ||||||||||| ||||||||||| ||||    
T  13214232 aaaaagagagtgatcgcattgtctctaagatacttctcatccatttccccctttccaaatccttccttcattagtgcttttacgaagt 13214319  T

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Target: chr1; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 13065148 - 13064951
Alignment:
Q  8 ttatcaaggttttccactattgaagttatccaattctcatgttgtgatacacaattatctttgatctcttgaataattttggcttccacaataggatgag 107  Q
    |||||||| |||||||| |||||||| ||| | || ||||  |  |||| |||||||||||| |||||||||||||| ||||||||||||| |||||||     
T  13065148 ttatcaagcttttccacaattgaagtaatcaagttttcatcatcagatagacaattatctttcatctcttgaataatcttggcttccacaacaggatgac 13065049  T
Q  108 ttgaaacaagccagaaaaaccaactgagacttgaacttattgtgccattacctgctaacaaaagagagagtgcattgtctctaagatacttctcactc 205  Q
     |||||||||||| || ||||||||||||| |||||| | |||||| || || |||||||| |||  || |||| |||||||||||||||||||||||    
T  13065048 atgaaacaagccaaaagaaccaactgagacctgaactaactgtgccgtttcccgctaacaatagattgactgcagtgtctctaagatacttctcactc 13064951  T

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Target: chr1; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 39 - 162
Target Start/End: Complemental strand, 13244422 - 13244299
Alignment:
Q  39 aattctcatgttgtgatacacaattatctttgatctcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagact 138  Q
    ||||||| | ||||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| || |||||||| ||||     
T  13244422 aattctcctcttgtgttagacaattatctttgatctcttgaataattttcgcttccccaataggatgagttgaaacaagccaaaagaaccaacttagacc 13244323  T
Q  139 tgaacttattgtgccattacctgc 162  Q
    |||||| ||||| ||||| |||||    
T  13244322 tgaactaattgttccatttcctgc 13244299  T

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Target: chr1; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 62 - 232
Target Start/End: Original strand, 13204770 - 13204940
Alignment:
Q  62 ttatctttgatctcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacttgaacttattgtgccattacctg 161  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| ||||||   ||  ||| | ||||    
T  13204770 ttatctttgatttcttgaattattttggcttccacaataggatgagtggaaacaagccaaaaaaaccaacttagacctgaactagctggaccacttcctg 13204869  T
Q  162 ctaacaaaagagagagtgcattgtctctaagatacttctcactcactccctcatttccagaaccttccttc 232  Q
    |||| || |||||||||| || |||||||||| ||||| |||||| | | || |||||| | |||||||||    
T  13204870 ctaagaagagagagagtgtatcgtctctaagaaacttcccactcatttcttcctttccatatccttccttc 13204940  T

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Target: chr1; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 59 - 204
Target Start/End: Original strand, 13161829 - 13161974
Alignment:
Q  59 caattatctttgatctcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacttgaacttattgtgccattac 158  Q
    ||||||||||||||||||||||| |||||  ||||||||||||||| ||||||||  |||||||||||||||||||||  |||||| ||||  ||||| |    
T  13161829 caattatctttgatctcttgaatgattttttcttccacaataggataagttgaaaggagccagaaaaaccaactgagagctgaactaattgaaccatttc 13161928  T
Q  159 ctgctaacaaaagagagagtgcattgtctctaagatacttctcact 204  Q
    | || ||||  | || ||||||| | ||||||||||||||||||||    
T  13161929 cggcaaacaccatagtgagtgcagtatctctaagatacttctcact 13161974  T

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Target: chr1; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 39 - 198
Target Start/End: Original strand, 13271877 - 13272036
Alignment:
Q  39 aattctcatgttgtgatacacaattatctttgatctcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagact 138  Q
    ||||||| | ||||| || ||||| |||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||| || |||||||| ||||     
T  13271877 aattctcctcttgtgttagacaatgatctttgatctcttgaataagttttgcttccacattaggatgagttgaaacaagccaaaagaaccaacttagacc 13271976  T
Q  139 tgaacttattgtgccattacctgctaacaaaagagagagtgcattgtctctaagatactt 198  Q
    |||||| | ||| ||||| |||||   ||| |||| || |||| ||||||||| ||||||    
T  13271977 tgaactaactgttccatttcctgcagccaagagagtgaatgcagtgtctctaatatactt 13272036  T

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Target: chr1; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 59 - 204
Target Start/End: Original strand, 13094707 - 13094852
Alignment:
Q  59 caattatctttgatctcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacttgaacttattgtgccattac 158  Q
    ||||||||| ||||||||||||| |||||  ||||||||||||||| |||||||| ||||||||||||||||||||||  |||||| ||||| ||||| |    
T  13094707 caattatctctgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaactaattgtaccatttc 13094806  T
Q  159 ctgctaacaaaagagagagtgcattgtctctaagatacttctcact 204  Q
    | || || |  | ||  | |||| ||||||||||||||||||||||    
T  13094807 cggcaaatatcatagtaaatgcagtgtctctaagatacttctcact 13094852  T

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Target: chr1; HSP #13
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 59 - 204
Target Start/End: Original strand, 13130136 - 13130281
Alignment:
Q  59 caattatctttgatctcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacttgaacttattgtgccattac 158  Q
    ||||||||||||||||||||||| |||||  ||||||||||||||| |||||||| ||||||||||||||||||||||  |||||| ||||  ||||| |    
T  13130136 caattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaactaattgaaccatttc 13130235  T
Q  159 ctgctaacaaaagagagagtgcattgtctctaagatacttctcact 204  Q
    | || || || | ||  | |||| | ||||||||||||||||||||    
T  13130236 cggcaaaaaacatagtaaatgcagtatctctaagatacttctcact 13130281  T

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Target: chr1; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 60 - 144
Target Start/End: Complemental strand, 12963791 - 12963707
Alignment:
Q  60 aattatctttgatctcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacttgaact 144  Q
    |||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||| || |||||||| |||| ||||||    
T  12963791 aattatctttaatctcttgaataattttagtttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaact 12963707  T

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Target: chr1; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 19279040 - 19278946
Alignment:
Q  68 ttgatctcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacttgaacttattgtgccattacctgc 162  Q
    |||||||||||||||||||| ||||| ||||||||||||||||| || ||||| || |||||| ||||||  ||||| ||||| |||||||||||    
T  19279040 ttgatctcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccgaactaattgttccattacctgc 19278946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 13080747 - 13080643
Alignment:
Q  58 acaattatctttgatctcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacttgaacttattgtgccatta 157  Q
    ||||||||||||||||||||||||||||||  | || ||  ||||||| |||||||| ||||| ||||||||| |||||| || ||| ||||| |||||     
T  13080747 acaattatctttgatctcttgaataattttaccatctaccctaggatgcgttgaaaccagccaaaaaaaccaagtgagacctgtactaattgttccattt 13080648  T
Q  158 cctgc 162  Q
    |||||    
T  13080647 cctgc 13080643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 13086409 - 13086503
Alignment:
Q  50 tgtgatacacaattatctttgatctcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacttgaact 144  Q
    ||||||| |||||||||||| ||||||||||| ||||| |||||||| ||   ||||||||||||||||||  | |||||||| |||| ||||||    
T  13086409 tgtgatagacaattatcttttatctcttgaattattttagcttccactatgaaatgagttgaaacaagccaagagaaccaacttagacctgaact 13086503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 6 - 232
Target Start/End: Complemental strand, 31396613 - 31396386
Alignment:
Q  6 gcttatcaaggttttccactattgaagttatccaattctcatgttgtgatacacaattatctttgatctcttgaataattttggcttccacaataggatg 105  Q
    |||||||||||| |||||   |||| |||||||||||||||||||| | |  ||| |||||||  ||||||||||||||||||||||||||| |||||||    
T  31396613 gcttatcaaggtcttccagcgttgatgttatccaattctcatgttgggtttgacagttatcttgaatctcttgaataattttggcttccacattaggatg 31396514  T
Q  106 agttgaaa-caagccagaaaaaccaactgagacttgaacttattgtgccattacctgctaacaaaagagagagtgcattgtctctaagatacttctcact 204  Q
    |||||||| |||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||  ||||||||||||||||||| ||| |    
T  31396513 agttgaaaacaagccagaaaaaccaaccgagacttgaactaattgtgccatttcctgctaacaaaagagagagcacattgtctctaagatacttgtcaat 31396414  T
Q  205 cactccctcatttccagaaccttccttc 232  Q
    |||||| | ||||||||| |||||||||    
T  31396413 cactccattatttccagatccttccttc 31396386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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