View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8419_high_4 (Length: 239)
Name: NF8419_high_4
Description: NF8419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8419_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 7963114 - 7962892
Alignment:
| Q |
1 |
aaaaattcgattagagaagacacacttcatataaatttattgaggatttacggatgacttattcattattagattatgaacttaattcaatccaaatcaa |
100 |
Q |
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| T |
7963114 |
aaaaattagattagagaaaacacacttcatataaatttattgaggatttacggatgacttattcattattagattatgaacttaattcaatccaaatcaa |
7963015 |
T |
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| Q |
101 |
gaaaaatgtgtgtagaaggtccaaccatatatatcaatgtggcaattggtatgaatcgatacttcaatgctatacacccaccttaatttattccatggta |
200 |
Q |
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| T |
7963014 |
gaaaaatgtgtgtagaaggtccaaccatatatatcaatgtggcaattggtatgaatcgatacttcaatgctgtacacccaccttaatttattccacggta |
7962915 |
T |
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| Q |
201 |
tgatgatgtttcattcacacatg |
223 |
Q |
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| T |
7962914 |
tgatgatgtttcattcacacatg |
7962892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 211
Target Start/End: Original strand, 33575225 - 33575318
Alignment:
| Q |
118 |
ggtccaaccatatatatcaatgtggcaattggtatgaatcgatacttcaatgctatacacccaccttaatttattccatggtatgatgatgttt |
211 |
Q |
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| T |
33575225 |
ggtccaaccatatgtatcaatgttgcaattggtatgaatcaacatttgaatgcattacatccaccttaatttattttatggtatcatgatgttt |
33575318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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